BAC Information

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BAC

Clone NameB6Ng01-076L22
Chromosome12 (Build37)
Map Location 93,331,552 - 93,417,373
singlet/doubletdoublet
Overlap geneLOC100039425
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387
Downstream geneLOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076L22.bB6Ng01-076L22.g
ACCDH892920DH892921
length1,1181,138
definitionDH892920|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L22, 5' end.DH892921|Mus musculus domesticus DNA, BAC clone: B6Ng01-076L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,416,196 - 93,417,373)(93,331,552 - 93,332,668)
sequence
gaattctcagatacttttatacaattaatattagtatcatatagtgtgga
ttttgtttcatatgactgttacataaatattttgttcaatagaggaacca
tgaggcattaaattaatttttaagtgtattagcacttcaaggcctcagtg
tccacatgtggctgtcagtttccatattagaacatatcaacatggaatgt
atctgtcattgaagtctctattgggctgtggtgctcaataccttaacaga
caacagtaaaatgatcctttaatcttgttttcactatttatattcatgtt
catagtacaaagcgaggctgttaacttttgaagataaagtaatgaacaat
aaaaagaaattaggtttttactatatgcccctggctaggcatgactgctt
agttgactcacctaattccatgtaattctcccctcaatactgtaagaagt
gtatcattcccatgtcctctctctttctctctctctctctctctctctct
ctctctctctctctctctctttctctgtcttctccactagttatttctct
attaaatagacactggcatttatagaaaacttaggattgttatagaagtt
tctacctcctgttctgcccatgggagtcctattttcttgagcctcaatca
ctttttactttcgcaggactttctactgaccttacagttggaatggctct
tgccccctttccattttcctgtaagaattcacagtgattcccaaactgtc
tccttcccaacctaatacttaattactgtcattacaaagtgtccagagat
atctcaataatcaccactactttctataatcccattttggaaagtaacag
ctttatgtgtgttttaaaactcaatacacagctctgaaaacatgcacttg
tcttatttgacacaaagacatattgaaaataatcaaaacgggcaatattt
tcttagaaatacactgaaaccttcttggcaagatcaatgcaaataaagct
gggtggaaacctaacatggaattcctttaaatatttctttaaatattaat
aattccttaactttcttgtatccaggtttataattggttcctctctccaa
ggattgggggcgggcctg
gaattctccactgatgtttcccttcacagttcctccggggcccttcacac
taactgaacccttttggcgagctactgacgttttctgggacatgtacagc
ctggttcccgggaatgatcttcactctcgtggtagatttagaaagaaagt
gtgtctcagtccttgtttctcttggaggctgcttgctgtccttcctttgg
aagaaatccttgctttcgttggctctagatagcttcacattcctgctttg
tctctgtcatctgcatgaagcattttctatctttttattcattctgactt
ttttttttcctttttgacttctttaagatacacatagacctagacacaca
gacacagaagcacagagagacagatacacttatccatatgcacagagaca
gacagagacagacagacagacagacagacacacacacacacacacacaca
cagacacacacagacacacacagacacacacttatattattcctttttaa
ggccccaagaactcatttctggttgctcataaccacctgtaactctagct
ccaggggatcttaatacctctggcttctgtgggctctgcccttacgtgct
ctccaccatatacaaaattcaaaataaaaatccaattctgagaaaagaat
gtgtgaagatattttccactcagtaaactaactgacatatgcacctttct
cttttcatttccattgattgctacagctcaggtaacacaacccattatcc
aagttactgttttgtaagttaagtgacagggtaactgcaggaaagaccct
acatgtacacactgctaagacttgtttgtgctgaattaacctgcaatgtc
aatatcattcaaatggctagactgagaggaatatagacttagtagccctg
gtggttgtgaatttttgccttctgatagaaaagaaatataagggaaatag
ccttaatgtcatatattactgcttcaggactgatcatcttgactggtgga
gaacaaaactaagcctttgacatgactggcctttttattgttttttcttt
gcctaacatatcttgctgggctacctgagaagatggaaagacctgatgct
ttaagggggtgcttaatacccacagtctctccctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93416196_93417373
seq2: B6Ng01-076L22.b_43_1160 (reverse)

seq1  CAGGCCAG--CCCAATCCATAGAAAAGAAGAACAAATGACAATCCTGGAT  48
      |||||| |  |||||||| | | | ||| |||| ||| | || |||||||
seq2  CAGGCCCGCCCCCAATCC-TTGGAGAGAGGAACCAATTATAAACCTGGAT  49

seq1  ACAAAAATATTAAAGAA-TATTAAATATTAAAGAAATATT--AAAGAATT  95
      |||| ||  |||| ||| ||||||   |||||||||||||  || |||||
seq2  ACAAGAAAGTTAAGGAATTATTAATATTTAAAGAAATATTTAAAGGAATT  99

seq1  CCA-GCTAGG-TTCCACCCAGCTTTCTTTGCATTGATCTT-ACAAGAAGG  142
      ||| | |||| |||||||||||||| ||||||||||||||  ||||||||
seq2  CCATGTTAGGTTTCCACCCAGCTTTATTTGCATTGATCTTGCCAAGAAGG  149

seq1  TTTCAGTGTATTTCTAAGAAAATATTGCCCGTTTTGATTATTTTCAATAT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTATTTCTAAGAAAATATTGCCCGTTTTGATTATTTTCAATAT  199

seq1  GTCTTTGTGTTCAAATAAGACAAGTGCATGTTTTCAGAGCTGTGTATTGA  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTG-TCAAATAAGACAAGTGCATGTTTTCAGAGCTGTGTATTGA  248

seq1  GTTTTAAAACACACATAAAAGCTGTTACTTTCC-AAATGGGATTATAGAA  291
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GTTTTAAAACACACAT-AAAGCTGTTACTTTCCAAAATGGGATTATAGAA  297

seq1  AGTAGTGGTGATTATTGAGATATCTCTGGACACTTTGTAATGACAGTAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGGTGATTATTGAGATATCTCTGGACACTTTGTAATGACAGTAAT  347

seq1  TAAGTATTAGGTTGGGAAGGAGACAGTTTGGGAATCACTGTGAATTCTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTAGGTTGGGAAGGAGACAGTTTGGGAATCACTGTGAATTCTTA  397

seq1  CAGGAAAATGGAAAGGGGGCAAGAGCCATTCCAACTGTAAGGTCAGTAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATGGAAAGGGGGCAAGAGCCATTCCAACTGTAAGGTCAGTAGA  447

seq1  AAGTCCTGCGAAAGTAAAAAGTGATTGAGGCTCAAGAAAATAGGACTCCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGCGAAAGTAAAAAGTGATTGAGGCTCAAGAAAATAGGACTCCC  497

seq1  ATGGGCAGAACAGGAGGTAGAAACTTCTATAACAATCCTAAGTTTTCTAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGAACAGGAGGTAGAAACTTCTATAACAATCCTAAGTTTTCTAT  547

seq1  AAATGCCAGTGTCTATTTAATAGAGAAATAACTAGTGGAGATGACAGAAG  591
      |||||||||||||||||||||||||||||||||||||||||         
seq2  AAATGCCAGTGTCTATTTAATAGAGAAATAACTAGTGGAGA---------  588

seq1  ATGTGTTCTTGATTAGGGGCCTCAGAGAGAGACAGAGAGAGAGAGAGGGA  641
                                                        
seq2  --------------------------------------------------  588

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  691
             ||| ||||| |||||||||||||||||||||||||||||||||
seq2  -------AGACAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  631

seq1  GAGAGAGAGAGAAAGAGAGAGGACATGGGAATGATACACTTCTTACAGTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAAGAGAGAGGACATGGGAATGATACACTTCTTACAGTA  681

seq1  TTGAGGGGAGAATTACATGGAATTAGGTGAGTCAACTAAGCAGTCATGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGAGAATTACATGGAATTAGGTGAGTCAACTAAGCAGTCATGCC  731

seq1  TAGCCAGGGGCATATAGTAAAAACCTAATTTCTTTTTATTGTTCATTACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGGGCATATAGTAAAAACCTAATTTCTTTTTATTGTTCATTACT  781

seq1  TTATCTTCAAAAGTTAACAGCCTCGCTTTGTACTATGAACATGAATATAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCAAAAGTTAACAGCCTCGCTTTGTACTATGAACATGAATATAA  831

seq1  ATAGTGAAAACAAGATTAAAGGATCATTTTACTGTTGTCTGTTAAGGTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAAACAAGATTAAAGGATCATTTTACTGTTGTCTGTTAAGGTAT  881

seq1  TGAGCACCACAGCCCAATAGAGACTTCAATGACAGATACATTCCATGTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACAGCCCAATAGAGACTTCAATGACAGATACATTCCATGTTG  931

seq1  ATATGTTCTAATATGGAAACTGACAGCCACATGTGGACACTGAGGCCTTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCTAATATGGAAACTGACAGCCACATGTGGACACTGAGGCCTTG  981

seq1  AAGTGCTAATACACTTAAAAATTAATTTAATGCCTCATGGTTCCTCTATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAATACACTTAAAAATTAATTTAATGCCTCATGGTTCCTCTATT  1031

seq1  GAACAAAATATTTATGTAACAGTCATATGAAACAAAATCCACACTATATG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATATTTATGTAACAGTCATATGAAACAAAATCCACACTATATG  1081

seq1  ATACTAATATTAATTGTATAAAAGTATCTGAGAATTC  1178
      |||||||||||||||||||||||||||||||||||||
seq2  ATACTAATATTAATTGTATAAAAGTATCTGAGAATTC  1118

seq1: chr12_93331552_93332668
seq2: B6Ng01-076L22.g_66_1203

seq1  GAATTCTCCACTGATGTTTCCCTTCACAGTTCCTCCGGGGCCCTTCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACTGATGTTTCCCTTCACAGTTCCTCCGGGGCCCTTCACAC  50

seq1  TAACTGAACCCTTTTGGCGAGCTACTGACGTTTTCTGGGACATGTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAACCCTTTTGGCGAGCTACTGACGTTTTCTGGGACATGTACAGC  100

seq1  CTGGTTCCCGGGAATGATCTTCACTCTCGTGGTAGATTTAGAAAGAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCCGGGAATGATCTTCACTCTCGTGGTAGATTTAGAAAGAAAGT  150

seq1  GTGTCTCAGTCCTTGTTTCTCTTGGAGGCTGCTTGCTGTCCTTCCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAGTCCTTGTTTCTCTTGGAGGCTGCTTGCTGTCCTTCCTTTGG  200

seq1  AAGAAATCCTTGCTTTCGTTGGCTCTAGATAGCTTCACATTCCTGCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCCTTGCTTTCGTTGGCTCTAGATAGCTTCACATTCCTGCTTTG  250

seq1  TCTCTGTCATCTGCATGAAGCATTTTCTATCTTTTTATTCATTCTGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCATCTGCATGAAGCATTTTCTATCTTTTTATTCATTCTGACTT  300

seq1  TTTTTTTTCCTTTTTGACTTCTTTAAGATACACATAGACCTAGACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTTTTTGACTTCTTTAAGATACACATAGACCTAGACACACA  350

seq1  GACACAGAAGCACAGAGAGACAGATACACTTATCCATATGCACAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAGCACAGAGAGACAGATACACTTATCCATATGCACAGAGACA  400

seq1  GACAGAGACAGACAGACAGACAGACAGACACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAGACAGACAGACAGACAGACACACACACACACACACACACA  450

seq1  CAGACACACACAGACACACACAGACACACACTTATATTATTCCTTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACAGACACACACAGACACACACTTATATTATTCCTTTTTAA  500

seq1  GGCCCCAAGAACTCATTTCTGGTTGCTCATAACCACCTGTAACTCTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAAGAACTCATTTCTGGTTGCTCATAACCACCTGTAACTCTAGCT  550

seq1  CCAGGGGATCTTAATACCTCTGGCTTCTGTGGGCTCTGCCCTTACGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATCTTAATACCTCTGGCTTCTGTGGGCTCTGCCCTTACGTGCT  600

seq1  CTCCACCATATACAAAATTCAAAATAAAAATCCAATTCTGAGAAAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCATATACAAAATTCAAAATAAAAATCCAATTCTGAGAAAAGAAT  650

seq1  GTGTGAAGATATTTTCCACTCAGTAAACTAACTGACATATGCACCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGATATTTTCCACTCAGTAAACTAACTGACATATGCACCTTTCT  700

seq1  CTTTTCATTTCCATTGATTGCTACAGCTCAGGTAACACAACCCATTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTTCCATTGATTGCTACAGCTCAGGTAACACAACCCATTATCC  750

seq1  AAGTTACTGTTTTGTAAGTTAAGTGACAGGGTAACTGCAGGAAAGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTGTTTTGTAAGTTAAGTGACAGGGTAACTGCAGGAAAGACCCT  800

seq1  ACATGTACACACTGCTAAGACTTGTTTGTGCTGAATTAACCTGCAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACACTGCTAAGACTTGTTTGTGCTGAATTAACCTGCAATGTC  850

seq1  AATATCATTCAAATGGCTAGACTGAGAGGAATATAGACTTAGTAGCCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTCAAATGGCTAGACTGAGAGGAATATAGACTTAGTAGCCCTG  900

seq1  GTGGTTGTGAATTTTTGCCTTCTGATAGAAAAGAAATATAAGGGAAATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTGAATTTTTGCCTTCTGATAGAAAAGAAATATAAGGGAAATAG  950

seq1  CCTTAATGTCATATATTACTGCTTCAAGACTGATCATC-TGACTGGT-GA  998
      |||||||||||||||||||||||||| ||||||||||| |||||||| ||
seq2  CCTTAATGTCATATATTACTGCTTCAGGACTGATCATCTTGACTGGTGGA  1000

seq1  G-ACAAAACTAAG-CTTTGACATGACTGGC--TTTTATTG--TTTTCTTT  1042
      | ||||||||||| ||||||||||||||||  ||||||||  ||||||||
seq2  GAACAAAACTAAGCCTTTGACATGACTGGCCTTTTTATTGTTTTTTCTTT  1050

seq1  GCCCTACATTATC-TGCT-GGCTAACTGAGAAGATGG-AAGA-CTGATGC  1088
      |||  ||| |||| |||| ||||| |||||||||||| |||| |||||||
seq2  GCCTAACA-TATCTTGCTGGGCTACCTGAGAAGATGGAAAGACCTGATGC  1099

seq1  TT----AGGGTGC-TAAT--CCACAGTCT---CCTCAGA  1117
      ||     |||||| ||||  |||||||||   |||||||
seq2  TTTAAGGGGGTGCTTAATACCCACAGTCTCTCCCTCAGA  1138