BAC Information

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BAC

Clone NameB6Ng01-077A16
Chromosome12 (Build37)
Map Location 55,947,355 - 56,088,692
singlet/doubletdoublet
Overlap geneCfl2, Baz1a
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6
Downstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A16.bB6Ng01-077A16.g
ACCDH893122DH893123
length1,003174
definitionDH893122|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A16, 5' end.DH893123|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,087,685 - 56,088,692)(55,947,355 - 55,947,528)
sequence
gaattcttactattattctgtatattatttggaggtcaattttttaaaag
ttttttgtttgtttgtttttcgggacagggtttctctgtatagccctggc
tgtcctggaactcactctgtagaccaggctggcctcgaactcagaaattt
ggaggtcaattttcaaaacaccaagtctttaagtgtgtactgtgtacttc
tctgaaaagcatacagtcttacgtatatacttgccactgggagacttgta
agcttctgtggctatgctcatgcagaaatgtgtatgcacacacactatta
actgctttttagtgccatagaacagactttcaccaagtattattttactc
gttctataatcatagtagtttgagaagttcataactggtaaatagtctta
aacaccaccacccacatacaaatagttatagaagatcccagtttttaaaa
tcatttcacagcattagtaattaggaaaaaaagtaacattttactggaag
actattcctcagttatacttttagactcattcttacatgttaatttgcaa
ataagcaaatagagtgatggcaaaaattattaaaagttggtgaacattct
gaatgacttctaacttagaatatccttttcaattcaaaagtcccaagtct
tataagaattaaattttggtttcatttgtgaaaattactgatatgggaaa
attgtttaatgagacatctcggtagtaaatttaacatcgttaggactcta
attgaactgaaaattgaccttaagttacttgtagattataagttacttat
actttttaaaaattctgggtttagtttttaatatgtagggggatcatata
agtgagatgacatttcaaacttttgtctttcctgagctatcaactctttg
aattgttttattatcaagaaggactggtgtcaaaaaagttctttctttca
gacggatgattacgcatgcaaatactttgagggttgtagcgatttcgtat
ctt
acagaaatgctcctgtctctgtctcccctcccttgatggaattaaaggga
atgaaagggaatccacatacctaatcatttgtgcatgtgtgtatatgtat
gtgtgtttatatatgtatgtatgtgtatatgtatatgtatgtgtgtttat
gtatgtatgtatgtatgtatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56087685_56088692
seq2: B6Ng01-077A16.b_46_1048 (reverse)

seq1  AAGAAACGAAATCGCTAAAACCCTCAAAGTATTTTGCATGCGTAATCATC  50
      |||| |||||||||||| ||||||||||||| ||||||||||||||||||
seq2  AAGATACGAAATCGCTACAACCCTCAAAGTA-TTTGCATGCGTAATCATC  49

seq1  CATCTTGAAAGAAAGAACTTTTTTTGACACCAGTCCTTCTTGATACTTAA  100
      | || ||||||||||||| ||||||||||||||||||||||||||  |||
seq2  CGTC-TGAAAGAAAGAAC-TTTTTTGACACCAGTCCTTCTTGATA-ATAA  96

seq1  AACAATTCAAAGAGTTTGATAGCTCAGGAAAAGACAAAAGTTTGAAATGT  150
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AACAATTCAAAGAG-TTGATAGCTCAGG-AAAGACAAAAGTTTGAAATGT  144

seq1  CATCTCACTTATATGATCCCCCTACATATTTAAAACTAAACCCAGAATTT  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATCTCACTTATATGATCCCCCTACATATTAAAAACTAAACCCAGAATTT  194

seq1  TTAAAAAGTATAAGTAACTTATAATCTACAAGTAACTTAAGGTCAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATAAGTAACTTATAATCTACAAGTAACTTAAGGTCAATTTT  244

seq1  CAGTTCAATTAGAGTCCTAACGATGTTAAATTTACTACCGAGATGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAATTAGAGTCCTAACGATGTTAAATTTACTACCGAGATGTCTCA  294

seq1  TTAAACAATTTTCCCATATCAGTAATTTTCACAAATGAAACC-AAATTTA  349
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAACAATTTTCCCATATCAGTAATTTTCACAAATGAAACCAAAATTTA  344

seq1  ATTCTTATAAGACTTGGGACTTTTGAATTGAAAAGGATATTCTAAGTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATAAGACTTGGGACTTTTGAATTGAAAAGGATATTCTAAGTTAG  394

seq1  AAGTCATTCAGAATGTTCACCAACTTTTAATAATTTTTGCCATCACTCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTCAGAATGTTCACCAACTTTTAATAATTTTTGCCATCACTCTA  444

seq1  TTTGCTTATTTGCAAATTAACATGTAAGAATGAGTCTAAAAGTATAACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATTTGCAAATTAACATGTAAGAATGAGTCTAAAAGTATAACTG  494

seq1  AGGAATAGTCTTCCAGTAAAATGTTACTTTTTTTCCTAATTACTAATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGTCTTCCAGTAAAATGTTACTTTTTTTCCTAATTACTAATGCT  544

seq1  GTGAAATGATTTTAAAAACTGGGATCTTCTATAACTATTTGTATGTGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGATTTTAAAAACTGGGATCTTCTATAACTATTTGTATGTGGGT  594

seq1  GGTGGTGTTTAAGACTATTTACCAGTTATGAACTTCTCAAACTACTATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTTTAAGACTATTTACCAGTTATGAACTTCTCAAACTACTATGA  644

seq1  TTATAGAACGAGTAAAATAATACTTGGTGAAAGTCTGTTCTATGGCACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACGAGTAAAATAATACTTGGTGAAAGTCTGTTCTATGGCACTA  694

seq1  AAAAGCAGTTAATAGTGTGTGTGCATACACATTTCTGCATGAGCATAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTTAATAGTGTGTGTGCATACACATTTCTGCATGAGCATAGCC  744

seq1  ACAGAAGCTTACAAGTCTCCCAGTGGCAAGTATATACGTAAGACTGTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTTACAAGTCTCCCAGTGGCAAGTATATACGTAAGACTGTATG  794

seq1  CTTTTCAGAGAAGTACACAGTACACACTTAAAGACTTGGTGTTTTGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGAGAAGTACACAGTACACACTTAAAGACTTGGTGTTTTGAAAA  844

seq1  TTGACCTCCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGT  894

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCCCGAAAAACAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCCCGAAAAACAAACA  944

seq1  AACAAAAAACTTTTAAAAAATTGACCTCCAAATAATATACAGAATAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACTTTTAAAAAATTGACCTCCAAATAATATACAGAATAATAG  994

seq1  TAAGAATTC  1008
      |||||||||
seq2  TAAGAATTC  1003

seq1: chr12_55947355_55947528
seq2: B6Ng01-077A16.g_74_247

seq1  ACAGAAATGCTCCTGTCTCTGTCTCCCCTCCCTTGATGGAATTAAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCTCCTGTCTCTGTCTCCCCTCCCTTGATGGAATTAAAGGGA  50

seq1  ATGAAAGGGAATCCACATACCTAATCATTTGTGCATGTGTGTATATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGGAATCCACATACCTAATCATTTGTGCATGTGTGTATATGTAT  100

seq1  GTGTGTTTATATATGTATGTATGTGTATATGTATATGTATGTGTGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTATATATGTATGTATGTGTATATGTATATGTATGTGTGTTTAT  150

seq1  GTATGTATGTATGTATGTATGTAT  174
      ||||||||||||||||||||||||
seq2  GTATGTATGTATGTATGTATGTAT  174