BAC Information

Click to search

BAC

Clone NameB6Ng01-077C02
Chromosome17 (Build37)12 (Build37)
Map Location 58,414,586 - 58,415,16249,862,137 - 49,863,202
singlet/doubletsingletsinglet
Overlap geneCntnap5c
Upstream geneVav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077C02.bB6Ng01-077C02.g
ACCDH893187DH893188
length9971,056
definitionDH893187|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C02, 5' end.DH893188|Mus musculus domesticus DNA, BAC clone: B6Ng01-077C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,414,586 - 58,415,162)(49,862,137 - 49,863,202)
sequence
gaattctttgtttcactttttactgcatttttaatagggtcatttgattc
tctggagtttaacttcttgagttctttgtatatattggatattagcccta
tatcagatgtaggattggtaaagattcaaaggaagaacaacaatatcagc
taatcagcctccctcccctgctgccctgagctcccagggactaaatgacc
aaccaaagagtacacatggagtgatccatgactcctactgcatatgttgc
agagaatggccttgtcaggcatcaatgggaggtgaggctcttgatcctat
gaaggctcaatgccccagtgtaggggagtgccagggcatggaggcggaag
tgagtgggtgggggagcaccctcaaagaagcagggttgggggggggtggg
atttctgtggcagcatgggctaggacctcacaatgcctttagatggcatc
actggataatcagattaggctgttcctctctactctcaaatccccagttt
cacctcttcattcggcagacatccttctgcttcattttctcttccttttc
tctaccacttaccattttaatcttagtgattcccatgtcttctgtgtgtc
ctgggccatcacaggagtgctatgtgctactgttgccatgtgacactagg
taggggtcattttggtgtagccctgactgccccagcctgcatagccccag
gcttaggatcactttcgcctgcctccccagccaaggaccatgatttttta
tcatttattttttgctaactgcttttgattaggatttctaacccctgtgt
tagtacagattttccagtgtttggcatctttgcttttgtcctcctcttca
taaatgaaaagcttccacctggttgggcattgaattatattagatgcacc
tccatgtatcagaccttcattttgtgcggtggcttccctttgaatactta
tatttaaaatttaccaaaaataaaaatgttgaaattttgttacaggg
gaattctgactctcttcttctttaaaagataagatttctagacaaatcaa
atttctttaaaacttagttattcaaacaagaaaataataaatggaatcaa
atatttgggtgatacaataatcaaaaaaagttttaggatttaatcattag
agaacgtgtacctttacatcagtcttggtaaaaaatattcacaccatgaa
aattcactggaaaataaaatttctttttttcctcttatagatgagtcttt
tagtacactgattatgggcaagtaggaaaaagaaggaggactcttatggg
aaagtatcttcaaaattcttaagtcagcaccagcaacgttatttgcctaa
taaaacgaccctaactcacttacagctaaattatagtttgcataacctgt
aaatgtattaaaagtagtgatctatatttttgatcctgagaatataaggc
atacattaggatgactcaccctgatctaaagtatcatgaatcattttttt
aaaggaacttcagtccaatactattttatgccagcattaaaatgtatcag
aaagtactgcacactctgtgtccctaatctccaccgtggaaaatttccca
tcacaatcaatatttcataacacagagactagagagatagctcagctggt
aacatgccagttgtgtgaatgatgaactccaggatcaacataaagaatga
atgcagcagaatgtgtctttaaacctggaactaggtatgggagcaggtag
attcctaaagctagtttgctcaataaatgtagctggactggtgagttcta
gtttcattgaaagattctgtctcaaaaaatacaatgtagataataatgga
ggaaactgtatctcaacctgtgggatctatatgcttattgacaggagcgc
aaattaccacactaagtatagatactgcaaatgctcatagcccactccct
tcatacacagagaaacacacacaaatcccacactacagtgaagcatttct
atgtataatgggttattcatgtcttgctgtgttatattcgttgtttggac
ttcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58414586_58415162
seq2: B6Ng01-077C02.b_443_1038

seq1  TTTCTGTGGCAGCATGGGCTAGGACCTCACAATGCCTTTAGATGGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGCAGCATGGGCTAGGACCTCACAATGCCTTTAGATGGCATCA  50

seq1  CTGGATAATCAGATTAGGCTGTTCCTCTCTACTCTCAAATCCCCAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAATCAGATTAGGCTGTTCCTCTCTACTCTCAAATCCCCAGTTTC  100

seq1  ACCTCTTCATTCGGCAGACATCCTTCTGCTTCATTTTCTCTTCCTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCATTCGGCAGACATCCTTCTGCTTCATTTTCTCTTCCTTTTCT  150

seq1  CTACCACTTACCATTTTAATCTTAGTGATTCCCATGTCTTCTGTGTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTTACCATTTTAATCTTAGTGATTCCCATGTCTTCTGTGTGTCC  200

seq1  TGGGCCATCACAGGAGTGCTATGTGCTACTGTTGCCATGTGACACTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATCACAGGAGTGCTATGTGCTACTGTTGCCATGTGACACTAGGT  250

seq1  AGGGGTCATTTTGGTGTAG-CCTGACTGCCCCAGCCTGCATAGCCCCAGG  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGGGTCATTTTGGTGTAGCCCTGACTGCCCCAGCCTGCATAGCCCCAGG  300

seq1  CTTAGGATCAC-TTCGCCTGCCTCCCCAGCCAAGGACCATGATTTTTTAT  348
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATCACTTTCGCCTGCCTCCCCAGCCAAGGACCATGATTTTTTAT  350

seq1  CATT--ATTTTTGCTAACTGC-TTTGATTAGGATTTCTAA-CACTGTGTT  394
      ||||   |||||||||||||| |||||||||||||||||| | |||||||
seq2  CATTTATTTTTTGCTAACTGCTTTTGATTAGGATTTCTAACCCCTGTGTT  400

seq1  AGTACAGA-TTTCCAGTG-TTGGCATCTTTGC-TTTGTCCT-CTC-TCAT  439
      |||||||| ||||||||| ||||||||||||| |||||||| ||| ||||
seq2  AGTACAGATTTTCCAGTGTTTGGCATCTTTGCTTTTGTCCTCCTCTTCAT  450

seq1  AGATGAAAAGCTTCCACCTG--TTGGCATTGAA-TATATTAGATGCAGCT  486
      | ||||||||||||||||||  | ||||||||| ||||||||||||| ||
seq2  AAATGAAAAGCTTCCACCTGGTTGGGCATTGAATTATATTAGATGCACCT  500

seq1  TCATTGTATCTGACCTTCA-TTTGTGTGGT-GCATCCC-TTGAATACATA  533
       || |||||| |||||||| |||||| ||| || |||| |||||||| ||
seq2  CCA-TGTATCAGACCTTCATTTTGTGCGGTGGCTTCCCTTTGAATACTTA  549

seq1  TATTT-AAATTTACAACAAAT-AAAATGTTG-AATTTTGTTACAGGG  577
      ||||| |||||||| | |||| ||||||||| |||||||||||||||
seq2  TATTTAAAATTTACCAAAAATAAAAATGTTGAAATTTTGTTACAGGG  596

seq1: chr12_49862137_49863202
seq2: B6Ng01-077C02.g_69_1124 (reverse)

seq1  AGTGAAAGTCCAAAACAACGAATATAACACAGGCAAGGACATGGAATAAC  50
      |||| |||||| ||||||||||||||||||| |||| ||||| |||||||
seq2  AGTG-AAGTCC-AAACAACGAATATAACACA-GCAA-GACAT-GAATAAC  45

seq1  ACATTTATTACATAAGAAATGCTTCACTGTAGTGTGGGATTTGTGTGTGT  100
       ||||   ||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATT--ATACAT-AGAAATGCTTCACTGTAGTGTGGGATTTGTGTGTGT  92

seq1  TTCTCTGTGTATGAAGGGAGGTGGGCTATGAGCATTTGCAGTATCTATAC  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTATGAAGGGA-GTGGGCTATGAGCATTTGCAGTATCTATAC  141

seq1  TTAGTTGTGGTTATTTGCGCTCCTGTCAATAGGCATATAGATCCCACAGG  200
      |||| |||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TTAG-TGTGGTAATTTGCGCTCCTGTCAATAAGCATATAGATCCCACAGG  190

seq1  TTGAGATACAGTTTTCCTCCATTATTATCTACATTGTATTTTTTGAGACA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATACAG-TTTCCTCCATTATTATCTACATTGTATTTTTTGAGACA  239

seq1  GAATCTTTCAATGAAACTAGAACTCACCAGTCCAGCTACATTTATTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCAATGAAACTAGAACTCACCAGTCCAGCTACATTTATTGAGC  289

seq1  -AACTAGCTTTAGGAATCTACCTGCTCCCATACCTAGTTCCAGGTTTAAA  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGCTTTAGGAATCTACCTGCTCCCATACCTAGTTCCAGGTTTAAA  339

seq1  GACACATTCTGCTGCATTCATTCTTTATGTTGATCCTGGAGTTCATCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTCTGCTGCATTCATTCTTTATGTTGATCCTGGAGTTCATCATT  389

seq1  CACACAACTGGCATGTTACCAGCTGAGCTATCTCTCTAGTCTCTGTGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACTGGCATGTTACCAGCTGAGCTATCTCTCTAGTCTCTGTGTTA  439

seq1  TGAAATATTGATTGTGATGGGAAATTTTCCACGGTGGAGATTAGGGACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTGATTGTGATGGGAAATTTTCCACGGTGGAGATTAGGGACAC  489

seq1  AGAGTGTGCAGTACTTTCTGATACATTTTAATGCTGGCATAAAATAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGCAGTACTTTCTGATACATTTTAATGCTGGCATAAAATAGTAT  539

seq1  TGGACTGAAGTTCCTTTAAAAAAATGATTCATGATACTTTAGATCAGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGAAGTTCCTTTAAAAAAATGATTCATGATACTTTAGATCAGGGT  589

seq1  GAGTCATCCTAATGTATGCCTTATATTCTCAGGATCAAAAATATAGATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCCTAATGTATGCCTTATATTCTCAGGATCAAAAATATAGATCA  639

seq1  CTACTTTTAATACATTTACAGGTTATGCAAACTATAATTTAGCTGTAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTAATACATTTACAGGTTATGCAAACTATAATTTAGCTGTAAGT  689

seq1  GAGTTAGGGTCGTTTTATTAGGCAAATAACGTTGCTGGTGCTGACTTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGGTCGTTTTATTAGGCAAATAACGTTGCTGGTGCTGACTTAAG  739

seq1  AATTTTGAAGATACTTTCCCATAAGAGTCCTCCTTCTTTTTCCTACTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAAGATACTTTCCCATAAGAGTCCTCCTTCTTTTTCCTACTTGC  789

seq1  CCATAATCAGTGTACTAAAAGACTCATCTATAAGAGGAAAAAAAGAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCAGTGTACTAAAAGACTCATCTATAAGAGGAAAAAAAGAAATT  839

seq1  TTATTTTCCAGTGAATTTTCATGGTGTGAATATTTTTTACCAAGACTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCAGTGAATTTTCATGGTGTGAATATTTTTTACCAAGACTGAT  889

seq1  GTAAAGGTACACGTTCTCTAATGATTAAATCCTAAAACTTTTTTTGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTACACGTTCTCTAATGATTAAATCCTAAAACTTTTTTTGATTA  939

seq1  TTGTATCACCCAAATATTTGATTCCATTTATTATTTTCTTGTTTGAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCACCCAAATATTTGATTCCATTTATTATTTTCTTGTTTGAATAA  989

seq1  CTAAGTTTTAAAGAAATTTGATTTGTCTAGAAATCTTATCTTTTAAAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTTAAAGAAATTTGATTTGTCTAGAAATCTTATCTTTTAAAGAA  1039

seq1  GAAGAGAGTCAGAATTC  1066
      |||||||||||||||||
seq2  GAAGAGAGTCAGAATTC  1056