BAC Information

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BAC

Clone NameB6Ng01-077L04
Chromosome12 (Build37)
Map Location 72,064,600 - 72,237,965
singlet/doubletdoublet
Overlap genePsma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik
Upstream geneSpg3a, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061, Frmd6, Actr10
Downstream geneLOC666162, Dact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077L04.bB6Ng01-077L04.g
ACCDH893604DH893605
length1,1741,124
definitionDH893604|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L04, 5' end.DH893605|Mus musculus domesticus DNA, BAC clone: B6Ng01-077L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,236,783 - 72,237,965)(72,064,600 - 72,065,727)
sequence
gaattctcgattagcccataaacacttttgtttatcaagggttatttaca
ctgtaggaactgcagaccgttagaaacctagtaggttaagcatattaggc
tttctagaaatttcgacagattccgttgccgtggaaaaggaagtgaaaag
tacagagagcactgacgaacagataatcacaaaagttaattcttagatga
tttttagaatttgcttgggcacttgcttttcttcctacattttcccacgt
ggtaacgaatctgcgtctaagggtctgaagccatgcttgacatcactgcc
cccacgtgttctcagctttccgcggcgcggcgctcgctctgtactgaccc
tccgagctcacacgctacctgccccgcagctcttcagcccggtcccggtg
tcagaggcgagatcctgtggctaagtatggtccctttcctctgctttcat
aatcccgggttcgcggccagtggggtgacagccttcactcgggaaaggga
gcgggcaggtaccccggagggagacgccgcgtgcacgcgggtcgtggggc
tgcgcaaccggcagcgcggcgcagcgggaggccagccgtgtcccggaggc
cttgtcaccccgagggtggggaccctaggccccgagacaccgcccacccg
ggactggatcgcttgggggcacgctttgagattacaaggtagccagccac
tcgatgaccttgagctgtcagacaggagcccctttactgaaaatctagac
ttcctcggctcttaccctgtctgcacactatgccttatgtcattaggtac
aaagggctcgcacccttcccaggtctcatattggagaacgcactgcttag
agctttcccattacgccttgctagaagcttttaaaatgtatttttttaaa
gtataatagattaatcatttttctacctattacattttctcttgttgtag
atttatctgttggttcatgatttgtgtataagtgtattaaaagaccgaat
ggcaatgtcagagctgcagagaccttaggatgaattaactttttgtaatt
tctatttaaaagttagatatgaaaaaaatgacctttcccctctagttcaa
cgctgggcactgcaaagcaatcagtaaagtgacctggagtaaatatttgt
aacgaatgtcgacctggactccac
gaattccaggccagccaaaggattcacagtaaatcagatataatggctac
atttctgtaaagtagctcttgggagttagaggaggggtgatcaggagttc
aaggcaacctcaattacatagcaggttggagcccagtctggtttctatga
aattccatctccacaaaataatttttagaaggaaatgaattctttgcatt
tgtctgtttgactttaaaatacttatatctctactattctacttaccctt
tcctacccaaagactaagatttactgatacctactgaccatctgtgtgcc
ctgtgtacttgtgggtgctgtgagcagtaagatgtggacaattgcccttt
aggggtcaaaggctaatagaaacagatttgcacaccaatggtcacacaaa
agctatcagtgttgctactgatactacttttggccctggagaaaaaccat
ttgggagaactttgacctgcttcctaaagaacaggtagtgggaactggtt
acttcgggttatgtgagcagcactctacactcaaggcaaatgagctgggg
tgctggaggtaagagtaatagtaagatgagatcttgctaatcccgactta
aggagaagttaatctgaatttcatgttagtaatgaaatatcagcttggcc
gccaagtttcctaatgtgctttgtcctaaaggtgatggtgatgtctgtcg
tcctgagcacatctgtcataggcactgatcgtcattgctttgacactgtt
gtcatcttctgtctggagcagaagctcctaaaggacagggctcagtgtct
ttgactttgagcatgctaaggctcagaagaaggtacactgtaaatactca
attttacatggacccactatttcgataacatctttttttgcaagaaattt
tttaagtccccagttgtggcatgctggcccgcatatggaagtctgtcaga
tgtagtattattccaaacccagagttcagaccaacttgggttctatactg
agatcctgatacacacacacacagacacaaacctctactctgcattgtac
tgatttttgtcttgattgggattagaaaattaaattgattattttaaacg
aaatctgattgcttgcagctttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_72236783_72237965
seq2: B6Ng01-077L04.b_46_1219 (reverse)

seq1  GTGGAGTCCCAGGTCTGACATTCGTTACAAATTATTTACT-CAGGTCACT  49
      ||||||| ||||||| ||||||||||||||| |||||||| |||||||||
seq2  GTGGAGT-CCAGGTC-GACATTCGTTACAAA-TATTTACTCCAGGTCACT  47

seq1  TTACTGATTGCTGTTGCAGTTGCTCAGCGTTTTGAAATTAGAGGGGAAAG  99
      |||||||||||| |||||| ||| |||||||    || ||||||||||||
seq2  TTACTGATTGCT-TTGCAG-TGCCCAGCGTT---GAACTAGAGGGGAAAG  92

seq1  GTCATTTTTTTTCATATCTAACTTTTATATAGAAATTAC-AGAAGTTAAT  148
      |||| |||||||||||||||||||||| ||||||||||| | ||||||||
seq2  GTCA-TTTTTTTCATATCTAACTTTTAAATAGAAATTACAAAAAGTTAAT  141

seq1  TCATCCCTAAGGTCTCTTGCAGCTCTGACATTGCCATTCGGTCTTTTAAT  198
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAT-CCTAAGGTCTC-TGCAGCTCTGACATTGCCATTCGGTCTTTTAAT  189

seq1  ACACTTATACAACAAATCATGAACCAACAGATAAATCTACAACAAGAGAA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATAC-ACAAATCATGAACCAACAGATAAATCTACAACAAGAGAA  238

seq1  AATGTAATAGGTAGAAAAATGATTAATCTATTATACTTTAAAAAAATACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAGGTAGAAAAATGATTAATCTATTATACTTTAAAAAAATACA  288

seq1  TTTTAAAAGCTTCTAGCAAGGCGTAATGGGAAAGCTCTAAGCAGTGCGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGCTTCTAGCAAGGCGTAATGGGAAAGCTCTAAGCAGTGCGTT  338

seq1  CTCCAATATGAGACCTGGGAAGGGTGCGAGCCC-TTGTACCTAATGACAT  397
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCAATATGAGACCTGGGAAGGGTGCGAGCCCTTTGTACCTAATGACAT  388

seq1  AAGGCATAGTGTGCAGACAGGGTAAGAGCCGAGGAAGTCTAGATTTTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATAGTGTGCAGACAGGGTAAGAGCCGAGGAAGTCTAGATTTTCAG  438

seq1  TAAAGGGGCTCCTGTCTGACAGCTCAAGGTCATCGAGTGGCTGGCTACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGCTCCTGTCTGACAGCTCAAGGTCATCGAGTGGCTGGCTACCT  488

seq1  TGTAATCTCAAAGCGTGCCCCCAAGCGATCCAGTCCCGGGTGGGCGGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTCAAAGCGTGCCCCCAAGCGATCCAGTCCCGGGTGGGCGGTGT  538

seq1  CTCGGGGCCTAGGGTCCCCACCCTCGGGGTGACAAGGCCTCCGGGACACG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGCCTAGGGTCCCCACCCTCGGGGTGACAAGGCCTCCGGGACACG  588

seq1  GCTGGCCTCCCGCTGCGCCGCGCTGCCGGTTGCGCAGCCCCACGACCCGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCCCGCTGCGCCGCGCTGCCGGTTGCGCAGCCCCACGACCCGC  638

seq1  GTGCACGCGGCGTCTCCCTCCGGGGTACCTGCCCGCTCCCTTTCCCGAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGCGGCGTCTCCCTCCGGGGTACCTGCCCGCTCCCTTTCCCGAGT  688

seq1  GAAGGCTGTCACCCCACTGGCCGCGAACCCGGGATTATGAAAGCAGAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTGTCACCCCACTGGCCGCGAACCCGGGATTATGAAAGCAGAGGA  738

seq1  AAGGGACCATACTTAGCCACAGGATCTCGCCTCTGACACCGGGACCGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCATACTTAGCCACAGGATCTCGCCTCTGACACCGGGACCGGGC  788

seq1  TGAAGAGCTGCGGGGCAGGTAGCGTGTGAGCTCGGAGGGTCAGTACAGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCTGCGGGGCAGGTAGCGTGTGAGCTCGGAGGGTCAGTACAGAG  838

seq1  CGAGCGCCGCGCCGCGGAAAGCTGAGAACACGTGGGGGCAGTGATGTCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGCCGCGCCGCGGAAAGCTGAGAACACGTGGGGGCAGTGATGTCAA  888

seq1  GCATGGCTTCAGACCCTTAGACGCAGATTCGTTACCACGTGGGAAAATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCTTCAGACCCTTAGACGCAGATTCGTTACCACGTGGGAAAATGT  938

seq1  AGGAAGAAAAGCAAGTGCCCAAGCAAATTCTAAAAATCATCTAAGAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAAGCAAGTGCCCAAGCAAATTCTAAAAATCATCTAAGAATTA  988

seq1  ACTTTTGTGATTATCTGTTCGTCAGTGCTCTCTGTACTTTTCACTTCCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGATTATCTGTTCGTCAGTGCTCTCTGTACTTTTCACTTCCTT  1038

seq1  TTCCACGGCAACGGAATCTGTCGAAATTTCTAGAAAGCCTAATATGCTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACGGCAACGGAATCTGTCGAAATTTCTAGAAAGCCTAATATGCTTA  1088

seq1  ACCTACTAGGTTTCTAACGGTCTGCAGTTCCTACAGTGTAAATAACCCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAGGTTTCTAACGGTCTGCAGTTCCTACAGTGTAAATAACCCTT  1138

seq1  GATAAACAAAAGTGTTTATGGGCTAATCGAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  GATAAACAAAAGTGTTTATGGGCTAATCGAGAATTC  1174

seq1: chr12_72064600_72065727
seq2: B6Ng01-077L04.g_67_1190

seq1  GAATTCCAGGCCAGCCAAAGGATTCACAGTAAATCAGATATAATGGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAAAGGATTCACAGTAAATCAGATATAATGGCTAC  50

seq1  ATTTCTGTAAAGTAGCTCTTGGGAGTTAGAGGAGGGGTGATCAGGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTAAAGTAGCTCTTGGGAGTTAGAGGAGGGGTGATCAGGAGTTC  100

seq1  AAGGCAACCTCAATTACATAGCAGGTTGGAGCCCAGTCTGGTTTCTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACCTCAATTACATAGCAGGTTGGAGCCCAGTCTGGTTTCTATGA  150

seq1  AATTCCATCTCCACAAAATAATTTTTAGAAGGAAATGAATTCTTTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATCTCCACAAAATAATTTTTAGAAGGAAATGAATTCTTTGCATT  200

seq1  TGTCTGTTTGACTTTAAAATACTTATATCTCTACTATTCTACTTACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGACTTTAAAATACTTATATCTCTACTATTCTACTTACCCTT  250

seq1  TCCTACCCAAAGACTAAGATTTACTGATACCTACTGACCATCTGTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCAAAGACTAAGATTTACTGATACCTACTGACCATCTGTGTGCC  300

seq1  CTGTGTACTTGTGGGTGCTGTGAGCAGTAAGATGTGGACAATTGCCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACTTGTGGGTGCTGTGAGCAGTAAGATGTGGACAATTGCCCTTT  350

seq1  AGGGGTCAAAGGCTAATAGAAACAGATTTGCACACCAATGGTCACACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAAAGGCTAATAGAAACAGATTTGCACACCAATGGTCACACAAA  400

seq1  AGCTATCAGTGTTGCTACTGATACTACTTTTGGCCCTGGAGAAAAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCAGTGTTGCTACTGATACTACTTTTGGCCCTGGAGAAAAACCAT  450

seq1  TTGGGAGAACTTTGACCTGCTTCCTAAAGAACAGGTAGTGGGAACTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAACTTTGACCTGCTTCCTAAAGAACAGGTAGTGGGAACTGGTT  500

seq1  ACTTCGGGTTATGTGAGCAGCACTCTACACTCAAGGCAAATGAGCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGGGTTATGTGAGCAGCACTCTACACTCAAGGCAAATGAGCTGGGG  550

seq1  TGCTGGAGGTAAGAGTAATAGTAAGATGAGATCTTGCTAATCCCGACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGTAAGAGTAATAGTAAGATGAGATCTTGCTAATCCCGACTTA  600

seq1  AGGAGAAGTTAATCTGAATTTCATGTTAGTAATGAAATATCAGCTTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGTTAATCTGAATTTCATGTTAGTAATGAAATATCAGCTTGGCC  650

seq1  GCCAAGTTTCCTAATGTGCTTTGTCCTAAAGGTGATGGTGATGTCTGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTTCCTAATGTGCTTTGTCCTAAAGGTGATGGTGATGTCTGTCG  700

seq1  TCCTGAGCACATCTGTCATAGGCACTGATCGTCATTGCTTTGACACTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCACATCTGTCATAGGCACTGATCGTCATTGCTTTGACACTGTT  750

seq1  GTCATCTTCTGTCTGGAGCAGAAGCTCCTAAAGGACAGGGCTCAGTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTCTGTCTGGAGCAGAAGCTCCTAAAGGACAGGGCTCAGTGTCT  800

seq1  TTGACTTTGAGCATGCTAAGGCTCAGAAGAAGGTACACTGTAAATACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTGAGCATGCTAAGGCTCAGAAGAAGGTACACTGTAAATACTCA  850

seq1  A-TTTACATGGACCCACTATTTCGATAACATCTTTTTTTGCAAGAAATAT  899
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTTACATGGACCCACTATTTCGATAACATCTTTTTTTGCAAGAAATTT  900

seq1  TTTAAGTCCCCAGTTGT-GCATGCTGGCACGCATATGG-AGTCTGTCAGA  947
      ||||||||||||||||| |||||||||| ||||||||| |||||||||||
seq2  TTTAAGTCCCCAGTTGTGGCATGCTGGCCCGCATATGGAAGTCTGTCAGA  950

seq1  TGTAGTATTA-TCCAAACCCAGGAGTTCAAGACCAACTTGGGTTCTATAC  996
      |||||||||| |||||||||| |||||| |||||||||||||||||||||
seq2  TGTAGTATTATTCCAAACCCA-GAGTTC-AGACCAACTTGGGTTCTATAC  998

seq1  TGAGATCCTGATAACACACACACACAGACACAAAACCCTCTACTCTGCAT  1046
      |||||||||||| |||||||||||||||||||||  ||||||||||||| 
seq2  TGAGATCCTGAT-ACACACACACACAGACACAAA--CCTCTACTCTGCA-  1044

seq1  TTGTACTGA-TTTTGTCTTGTATTTGGATTAAGAAAATAAAAATGATCAT  1095
      ||||||||| |||||||||| ||| ||||| ||||||| ||| |||| ||
seq2  TTGTACTGATTTTTGTCTTG-ATTGGGATT-AGAAAATTAAATTGATTAT  1092

seq1  TTAAAACGAAATCTGATTGCTCTGCAGCCTTAT  1128
      || |||||||||||||||||| |||||| ||||
seq2  TTTAAACGAAATCTGATTGCT-TGCAGCTTTAT  1124