BAC Information

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BAC

Clone NameB6Ng01-078E20
Chromosome12 (Build37)
Map Location 18,680,230 - 18,780,566
singlet/doubletdoublet
Overlap geneEG668553, LOC668558
Upstream geneHpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik
Downstream geneLOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E20.bB6Ng01-078E20.g
ACCDH894035DH894036
length425848
definitionDH894035|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E20, 5' end.DH894036|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,680,230 - 18,680,660)(18,779,720 - 18,780,566)
sequence
agttcacagcacccatatctggctctgtgagccaccagtaacttcatttc
cagagccctgacttcttcccacctctctaagcatacatacacacagacat
acatgtgaatagaaatttaaaaatcttttttaaaacgaaaaagatagctg
ggcagtggcagcacacaacttcaatcacaactttcgtgaagcagaggcag
gtgggtctctgtgagtttgaggccagcctggtctacagagtgagttccag
gatagccagggctacacagagaaaccctgtcttgggagatgtacagagta
aagaaaagcaaaaagaaagaaaaacattctcatgtccacctctatatcct
tcatgggaaagcatgcctgtgtttatgtgtataagggttcatgtgtgtgt
ttatgagggtgtgtgtgatggtttg
gaattcacaggtcaacttgtggaagctggttctcttttcctaccatgtgg
gtcttagggatctaacccaggctgccaggcttggtagcaagcacctttac
ccacagagtcagctcactggaccaaatacagagatggtttagagcatgga
gcaggaaggatgcagggtgcacataagcaccgctcgagtgaagaactgac
ggctgaatcatcctttactgtgtctttctgatttctataggaagtcctat
agacagctaatgtgtgtgtatgttatacatgtgtgtgcagaagaacaccc
acctgtgcagaggccaaaaagcaataccggtgttcacagtattccctttt
ctctctcactgaacccggccggggcctaccattttagctagagtgcctgc
tcagcaagcttctgggactcacttgtcccctagttctagggattcgggca
tgctcagccactcctgacttttctgtgggtgttgggatcagaactcatgt
cctcatgctgggtatcaagtgttcttccccactgagccattttcccagtt
ctagctttgacaattcttaatcaccgatctgagcctcagatctcattaga
ggtttgttttgtttttgttttgttttgttttgttttaaaaaaaagacccg
tttttatagaatttgtgtgaataaacctgatgaaatgagctcagctggga
cctgatgtccagcaagcaatcgatagatgcttggcttttaatcgtactca
ctgcaaagacatgcagtctttaatacagcggtagcaagtgggcagaggaa
tgacctggtgtatgggtagggataggggtcttggatccctgccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18680230_18680660
seq2: B6Ng01-078E20.b_35_465

seq1  GAATTCAGTTCACAGCACCCATATCTGGCTCTGTGAGCCACCAGTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCACAGCACCCATATCTGGCTCTGTGAGCCACCAGTAACTT  50

seq1  CATTTCCAGAGCCCTGACTTCTTCCCACCTCTCTAAGCATACATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGAGCCCTGACTTCTTCCCACCTCTCTAAGCATACATACACAC  100

seq1  AGACATACATGTGAATAGAAATTTAAAAATCTTTTTTAAAACGAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACATGTGAATAGAAATTTAAAAATCTTTTTTAAAACGAAAAAGA  150

seq1  TAGCTGGGCAGTGGCAGCACACAACTTCAATCACAACTTTCGTGAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGCAGTGGCAGCACACAACTTCAATCACAACTTTCGTGAAGCAG  200

seq1  AGGCAGGTGGGTCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGGTCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAG  250

seq1  TTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGGGAGATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTTGGGAGATGTAC  300

seq1  AGAGTAAAGAAAAGCAAAAAGAAAGAAAAACATTCTCATGTCCACCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAAAAGCAAAAAGAAAGAAAAACATTCTCATGTCCACCTCTA  350

seq1  TATCCTTCATGGGAAAGCATGCCTGTGTTTATGTGTATAAGGGTTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCATGGGAAAGCATGCCTGTGTTTATGTGTATAAGGGTTCATGT  400

seq1  GTGTGTTTATGAGGGTGTGTGTGATGGTTTG  431
      |||||||||||||||||||||||||||||||
seq2  GTGTGTTTATGAGGGTGTGTGTGATGGTTTG  431

seq1: chr12_18779720_18780566
seq2: B6Ng01-078E20.g_70_917 (reverse)

seq1  GGGAGTGCAGGGATCCAAGACCCCTATCCCTGACCCCATACACCAGGTCA  50
      ||||| |||||||||||||||||||||||||   ||||||||||||||||
seq2  GGGAGGGCAGGGATCCAAGACCCCTATCCCT--ACCCATACACCAGGTCA  48

seq1  TTCCTCTGCCCACTTGCTACCTGCTGTATTAAAGGACTGCATGTCTTTGC  100
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTCCTCTGCCCACTTGCTACC-GCTGTATTAAA-GACTGCATGTCTTTGC  96

seq1  AGTGAGTAACGA-TAAAAGCCAAGCATCTATCGATTGCTTGCTGGACATC  149
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  AGTGAGT-ACGATTAAAAGCCAAGCATCTATCGATTGCTTGCTGGACATC  145

seq1  AGGTCCCAGCTGAGCTCA-TTCATCAGGTTTATTCACAC-AATTCTAT-A  196
      |||||||||||||||||| |||||||||||||||||||| |||||||| |
seq2  AGGTCCCAGCTGAGCTCATTTCATCAGGTTTATTCACACAAATTCTATAA  195

seq1  AAACGGGTC-TTTTTTTAAAACAAAACAAAACAAAAC-AAAACAAAACAA  244
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  AAACGGGTCTTTTTTTTAAAACAAAACAAAACAAAACAAAAACAAAACAA  245

seq1  ACCTCTAATGAGATCTGAGGCTCAGATCGGTGATTAAGAATTGTCAAAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATGAGATCTGAGGCTCAGATCGGTGATTAAGAATTGTCAAAGC  295

seq1  TAGAACTGGGAAAATGGCTCAGTGGGGAAGAACACTTGATACCCAGCATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGGGAAAATGGCTCAGTGGGGAAGAACACTTGATACCCAGCATG  345

seq1  AGGACATGAGTTCTGATCCCAACACCCACAGAAAAGTCAGGAGTGGCTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGAGTTCTGATCCCAACACCCACAGAAAAGTCAGGAGTGGCTGA  395

seq1  GCATGCCCGAATCCCTAGAACTAGGGGACAAGTGAGTCCCAGAAGCTTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCGAATCCCTAGAACTAGGGGACAAGTGAGTCCCAGAAGCTTGC  445

seq1  TGAGCAGGCACTCTAGCTAAAATGGTAGGCCCCGGCCGGGTTCAGTGAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGCACTCTAGCTAAAATGGTAGGCCCCGGCCGGGTTCAGTGAGA  495

seq1  GAGAAAAGGGAATACTGTGAACACCGGTATTGCTTTTTGGCCTCTGCACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGAATACTGTGAACACCGGTATTGCTTTTTGGCCTCTGCACA  545

seq1  GGTGGGTGTTCTTCTGCACACACATGTATAACATACACACACATTAGCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGTTCTTCTGCACACACATGTATAACATACACACACATTAGCTG  595

seq1  TCTATAGGACTTCCTATAGAAATCAGAAAGACACAGTAAAGGATGATTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGACTTCCTATAGAAATCAGAAAGACACAGTAAAGGATGATTCA  645

seq1  GCCGTCAGTTCTTCACTCGAGCGGTGCTTATGTGCACCCTGCATCCTTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCAGTTCTTCACTCGAGCGGTGCTTATGTGCACCCTGCATCCTTCC  695

seq1  TGCTCCATGCTCTAAACCATCTCTGTATTTGGTCCAGTGAGCTGACTCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATGCTCTAAACCATCTCTGTATTTGGTCCAGTGAGCTGACTCTG  745

seq1  TGGGTAAAGGTGCTTGCTACCAAGCCTGGCAGCCTGGGTTAGATCCCTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGGTGCTTGCTACCAAGCCTGGCAGCCTGGGTTAGATCCCTAA  795

seq1  GACCCACATGGTAGGAAAAGAGAACCAGCTTCCACAAGTTGTCCTCTGAA  844
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  GACCCACATGGTAGGAAAAGAGAACCAGCTTCCACAAGTTGACCTGTGAA  845

seq1  TTC  847
      |||
seq2  TTC  848