BAC Information

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BAC

Clone NameB6Ng01-080N11
Chromosome12 (Build37)
Map Location 108,424,743 - 108,425,911
singlet/doubletsinglet
Overlap geneLOC100040484
Upstream geneLOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
Downstream geneLOC382635, LOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N11.bB6Ng01-080N11.g
ACCDH895864DH895865
length1,154507
definitionDH895864|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N11, 5' end.DH895865|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggtatctaagtaaggcatggagagtatgttctaagccagact
ggaagaggagacaatgcagggaacagaaggtcgttatgtaagcagagata
aaagaagacattgcctccactgaaaacaagcaagatgcgttaaaggaaaa
cgtttggagcagaagaaaatttttctagggaattaaaaacaagttaacac
ttaacacggctggactatattattaaaaatagttaatacagtaaatttca
ttatgttttaccataattagccttttctaaaatatgttaccaattaactg
aacaaattatatatagcattacatatgtatttcacatatgccagagaatg
cagaatatgtttttgaagaaagctaggcatggtagcacacctttaatccc
ggcagtcgagaggcagagcaggaagagctccatgaattcaaggccagaac
atagtctccatggtgagttctaggacagccagggctacatggtgagacct
attcctacaaaaatataagcacatgaatgtattttatgtacacatagtat
atatgctacataacaaattataggtgtgtgtataaaatgtctaatgtttg
tcagcttcatgatttagaatcatcacggagactgacagacttcagagtga
gtgacagattcagtgaggaatcttccagaaagattaatgggggtagagtg
gtgggcatggtctctgaagatttgtgatcccacacctgtggaatgaaggt
cccagaagaatgaagtggagaaagaggaggccaggagggtgcccacgaca
acatgaatgaatgtctgtggtctaccacaccatcaccactatgtgggact
gatccttctgaatccgagagctgtacaatcattctcttattaagttgtcc
tgttctatagtatgtaaaacatgaattccatacacagcctcccacatata
ttgatgtgtccctacatgggaaatatgtatggagctggcaacagaaaaac
agtaaagtactagaacacagttatctcctagaggaataaaaagacaaatg
gtcattaggaacatgagaggacagggcttgaaccacagctaccgaacaag
caataaaagatgggagatccaagagcatgggaggtaggcagccaacagcc
tgtc

atgtggctacagtcacatcccatgtcaaaatctggagctgagaatcctac
acacagacccagagtgcaggcacttccaccgtccatgaaaaactagctta
gctgctgtagagataatatcttatgtctgtatggatgtagcacctgtcaa
taatagatctgatggcctagggcttagacaggaaataggagatggaatat
ctgggaggtagaaaggattctgggaaagaaccagacatgggacattcacc
cagggaagatgtgtctagctagacactcggtacttgagcacaggtaacca
gccgtgtggcagaatgtaaattaaaagaagtgggatgttttaagttatga
tctagacagagaagagccaaagcttgaaatcaaggcatttattaataaat
aagtagtgccagaatcattattgttggaaacttagtggccagcaggaaaa
acagatttacaacccacttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108424743_108425911
seq2: B6Ng01-080N11.b_46_1199

seq1  GAATTCTGGGTATCTAAGTAAGGCATGGAGAGTATGTTCTAAGCCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTATCTAAGTAAGGCATGGAGAGTATGTTCTAAGCCAGACT  50

seq1  GGAAGAGGAGACAATGCAGGGAACAGAAGGTCGTTATGTAAGCAGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAGACAATGCAGGGAACAGAAGGTCGTTATGTAAGCAGAGATA  100

seq1  AAAGAAGACATTGCCTCCACTGAAAACAAGCAAGATGCGTTAAAGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACATTGCCTCCACTGAAAACAAGCAAGATGCGTTAAAGGAAAA  150

seq1  CGTTTGGAGCAGAAGAAAATTTTTCTAGGGAATTAAAAACAAGTTAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGAGCAGAAGAAAATTTTTCTAGGGAATTAAAAACAAGTTAACAC  200

seq1  TTAACACGGCTGGACTATATTATTAAAAATAGTTAATACAGTAAATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACGGCTGGACTATATTATTAAAAATAGTTAATACAGTAAATTTCA  250

seq1  TTATGTTTTACCATAATTAGCCTTTTCTAAAATATGTTACCAATTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTACCATAATTAGCCTTTTCTAAAATATGTTACCAATTAACTG  300

seq1  AACAAATTATATATAGCATTACATATGTATTTCACATATGCCAGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTATATATAGCATTACATATGTATTTCACATATGCCAGAGAATG  350

seq1  CAGAATATGTTTTTGAAGAAAGCTAGGCATGGTAGCACACCTTTAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGTTTTTGAAGAAAGCTAGGCATGGTAGCACACCTTTAATCCC  400

seq1  GGCAGTCGAGAGGCAGAGCAGGAAGAGCTCCATGAATTCAAGGCCAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCGAGAGGCAGAGCAGGAAGAGCTCCATGAATTCAAGGCCAGAAC  450

seq1  ATAGTCTCCATGGTGAGTTCTAGGACAGCCAGGGCTACATGGTGAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCCATGGTGAGTTCTAGGACAGCCAGGGCTACATGGTGAGACCT  500

seq1  ATTCCTACAAAAATATAAGCACATGAATGTATTTTATGTACACATAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTACAAAAATATAAGCACATGAATGTATTTTATGTACACATAGTAT  550

seq1  ATATGCTACATAACAAATTATAGGTGTGTGTATAAAATGTCTAATGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTACATAACAAATTATAGGTGTGTGTATAAAATGTCTAATGTTTG  600

seq1  TCAGCTTCATGATTTAGAATCATCACGGAGACTGACAGACTTCAGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCATGATTTAGAATCATCACGGAGACTGACAGACTTCAGAGTGA  650

seq1  GTGACAGATTCAGTGAGGAATCTTCCAGAAAGATTAATGGGGGTAGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGATTCAGTGAGGAATCTTCCAGAAAGATTAATGGGGGTAGAGTG  700

seq1  GTGGGCATGGTCTCTGAAGATTTGTGATCCCACACCTGTGGAATGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCATGGTCTCTGAAGATTTGTGATCCCACACCTGTGGAATGAAGGT  750

seq1  CCCAGAAGAATGAAGTGGAGAAAGAGGAGGCCAGGAGGGTGCCCACGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGAATGAAGTGGAGAAAGAGGAGGCCAGGAGGGTGCCCACGACA  800

seq1  ACATGAATGAATGTCTGTGGTCTACCACACCATCACCACTATGTGGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGAATGTCTGTGGTCTACCACACCATCACCACTATGTGGGACT  850

seq1  GATCCTTCTGAATCCGAGAGCTGTACAATCATTCTTCTTATTAAGTTGTC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCCTTCTGAATCCGAGAGCTGTACAATCATTC-TCTTATTAAGTTGTC  899

seq1  CTGTTCTATAGTATGTAAAAACAATGAATTCCATACACAGCCTCCCACAT  950
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  CTGTTCTATAGTATGTAAAA--CATGAATTCCATACACAGCCTCCCACAT  947

seq1  ATATTGATGTGTCCCTAACATGGGAAATATGTATGGAGCTGGCAACAGAA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATTGATGTGTCCCT-ACATGGGAAATATGTATGGAGCTGGCAACAGAA  996

seq1  AAACAAGTAAAGTACTAGAAACAACAGTTATCTCCTAGAGGAATAAAAAA  1050
      |||| |||||||||||||||   ||||||||||||||||||||| |||||
seq2  AAAC-AGTAAAGTACTAGAA--CACAGTTATCTCCTAGAGGAAT-AAAAA  1042

seq1  GACAAATGGTCAATAGGAACATGAGAGGACAGGTCTGACACCACCAGCTA  1100
      |||||||||||| |||||||||||||||||||| ||   |||| ||||||
seq2  GACAAATGGTCATTAGGAACATGAGAGGACAGGGCTTGAACCA-CAGCTA  1091

seq1  CCAGACAAAGCAAATAAAAAGATGGAGAATCCACAGAGCATGGGAGGTAT  1150
      || ||  ||||||   |||||||||   ||||| ||||||||||||||| 
seq2  CC-GAACAAGCAA--TAAAAGATGGGAGATCCA-AGAGCATGGGAGGTA-  1136

seq1  GGCAGCCAACAGCCATGTC  1169
      |||||||||||||| ||||
seq2  GGCAGCCAACAGCC-TGTC  1154


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