BAC Information

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BAC

Clone NameB6Ng01-081H05
ChromosomeX (Build37)12 (Build37)
Map Location 100,165,972 - 100,166,49659,643,234 - 59,644,397
singlet/doubletsingletsinglet
Overlap geneEG331480
Upstream geneRgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik
Downstream geneEG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H05.bB6Ng01-081H05.g
ACCDH896302DH896303
length1,0471,150
definitionDH896302|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H05, 5' end.DH896303|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,165,972 - 100,166,496)(59,643,234 - 59,644,397)
sequence
gaattctttgtttagctctgcaacccatccttttaatgggcttatttgaa
tttctggagttcagcttcttcagctctttgtaaatattggctattagtcc
cctatcagatttaggattggtaaaaatcctttcccaatatgttggtggcc
tttttgtgttattgacagtgtcttttgccttacagaagctttgcaatttt
atgaggtcccatttgtctattcttgattttacagcacaagccattgctgt
tctgcttaggattttttcccctgtgcccatgtcttcaaagtttcccccaa
ctttctcctctattaatttcagtgtctctggatttatgtggaggtctttg
atccacttagacttgagctttgtacaaggagataagaatggatccattca
cattcttctacatgttaactgccacttgtgctagcaccatttgttgaaaa
tgctgtctttgttccactggatggttttagctctcttgtcaaagatcaaa
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
atctacctgtctatcactgtaccagtaccatgcagtttttatcacaattg
ctctgtagtacagttttaggtcaggcatggtgatcccaccagaggttctt
ttattgttgagaatagtttttgctatcctaggttttttattattccagat
gaatttgaaaattaccctttctaactcagtgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttactgtattaatcctgcctatctatgagcatcggagatctttccatct
tctgagaatattcttcaatttctttcttcagagacttgaaagtcttatca
tacagatctttcacttccttagtttagagtcatgtgaaggtattttatat
catttgtgactattgggagggttgtgttttccctatttctttctagcctg
ttatcctttgtgagaagaaaggccattgacttgtttgagtttatttt
gaattcagtgtcatgctccaagtcagaagttaacagcactgtttatatag
aagtgaactggctcctggatgaacactctttctacctgtatatatgaaag
atgataatgaagttctaatcccttgattccaatgagaaacattgcatagc
aatactgttgatgttctgatggtatcttttgaagtcatggagaattagaa
atggtttagaagataggggttgtccttaatctgtattgcagaatgtgcat
cattaattcagtaagaaatactgatttcgccagtcctctcactttgcaca
agaatgttgtctcaaacaccactgagtactcgcaattcatgtagcaatat
atcattattactagagagttctttaaatttaagatgctataaaagttaat
taagtgtgcacacttttaccaaagtcaaagaattgtatttatatcattat
gtattcactagttatattacctggcatgattaaaactatccttaactaat
tttaaataaaacctaatggaaacaattaaagattaatgtcatttcaataa
tttcctaaaattacaataattaatttaaagttgtaatgttttccaacttt
gtaataagttactgtgttcctacatttgtcattgtatgtccaacatacaa
agaaataagcctaggctatttccacatcctgagcatgccacaaagaattg
actcagaaggaaccatgctacactatctctgcctgccttgtgatcatgca
gcagcagattctcccaggatctgcagcaatctgagcagaagaatctttct
tcaatgccgtactgccaccaaaatccacagaaatacaggagggctcttgt
gctgtttttgtattgcctaaatttgagctttacatgctgaataatattac
ttttattattagaacagtatatagatttagatccagttttatgttttaca
tatcgtcagttgggaaatgtccagaaacaggatattaaaccaatataggg
ccaccagttttgtcaacagtttttaatgagtggataattatttgcagaca
accttccctccattcggacttttctggctattgaaaggaaacatgccttc
tctcctgctccatggacctctatctttaaccaattttttctaaggtcaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100165972_100166496
seq2: B6Ng01-081H05.b_567_1088 (reverse)

seq1  AAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACA  50
      ||||| ||||||||||||||||||||||||||   ||||||| || ||||
seq2  AAAATAAACTCAAACAAGTCAATGGCCTTTCTTCTCACAAAGGAT-AACA  49

seq1  GGCTGAGGAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA  100
      |||| || |||||| ||||||||  ||| || || |||||||||||||| 
seq2  GGCT-AGAAAGAAA-TAGGGAAAACACAACCCTCCCAATAGTCACAAATG  97

seq1  ATATAAAATACCTTGGCGTGACTCT-AACTAAGGAAGTGAAAGATCTGTA  149
      ||||||||||||||  | ||||||| ||||||||||||||||||||||||
seq2  ATATAAAATACCTTCACATGACTCTAAACTAAGGAAGTGAAAGATCTGTA  147

seq1  TGATAAGAACTTCAAGTCTCTAAAGAAAGAAATTAAAGAAGA-TCTCAGA  198
      ||||||||  ||||||||||| |||||||||||| ||||| | |||||||
seq2  TGATAAGACTTTCAAGTCTCTGAAGAAAGAAATTGAAGAATATTCTCAGA  197

seq1  AGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAA  248
      |||||||||||||||| |||||||| ||| |||||||| || |  |||||
seq2  AGATGGAAAGATCTCCGATGCTCATAGATAGGCAGGATTAATACAGTAAA  247

seq1  AATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCA  297

seq1  AAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAATCTTCAAATTC  348
      |||||||||||||||||||||  || |||||||||| ||| |||||||||
seq2  AAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGGTAATTTTCAAATTC  347

seq1  ATCTGGAATAAAAAAAAACCTAGGATAGCAAAAAACTCTTCTCAAGTATA  398
      ||||||||||| ||||||||||||||||| ||||||| |||||||  |||
seq2  ATCTGGAATAATAAAAAACCTAGGATAGC-AAAAACTATTCTCAACAATA  396

seq1  AAAGAACCTCTGGTGGAATCACCATGCTGGACCTAAAGCTTTACTAAAGA  448
      |||||||||||||||| ||||||||||  |||||||| || ||||| |||
seq2  AAAGAACCTCTGGTGGGATCACCATGCCTGACCTAAAACTGTACTACAGA  446

seq1  GCAATTGTGATTAAAAACTGCATGGTATTGGTATAGTGACAGAGAAGTAG  498
      |||||||||| |||||||||||||||| ||||| ||||| ||| | ||||
seq2  GCAATTGTGA-TAAAAACTGCATGGTACTGGTACAGTGATAGACAGGTAG  495

seq1  ACCAATGGAATAGAATTGAAGACCCAG  525
      | |||||||||||||||||||||||||
seq2  ATCAATGGAATAGAATTGAAGACCCAG  522

seq1: chr12_59643234_59644397
seq2: B6Ng01-081H05.g_70_1219

seq1  GAATTCAGTGTCATGCTCCAAGTCAGAAGTTAACAGCACTGTTTATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCATGCTCCAAGTCAGAAGTTAACAGCACTGTTTATATAG  50

seq1  AAGTGAACTGGCTCCTGGATGAACACTCTTTCTACCTGTATATATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACTGGCTCCTGGATGAACACTCTTTCTACCTGTATATATGAAAG  100

seq1  ATGATAATGAAGTTCTAATCCCTTGATTCCAATGAGAAACATTGCATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAATGAAGTTCTAATCCCTTGATTCCAATGAGAAACATTGCATAGC  150

seq1  AATACTGTTGATGTTCTGATGGTATCTTTTGAAGTCATGGAGAATTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTGATGTTCTGATGGTATCTTTTGAAGTCATGGAGAATTAGAA  200

seq1  ATGGTTTAGAAGATAGGGGTTGTCCTTAATCTGTATTGCAGAATGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAGAAGATAGGGGTTGTCCTTAATCTGTATTGCAGAATGTGCAT  250

seq1  CATTAATTCAGTAAGAAATACTGATTTCGCCAGTCCTCTCACTTTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTCAGTAAGAAATACTGATTTCGCCAGTCCTCTCACTTTGCACA  300

seq1  AGAATGTTGTCTCAAACACCACTGAGTACTCGCAATTCATGTAGCAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTGTCTCAAACACCACTGAGTACTCGCAATTCATGTAGCAATAT  350

seq1  ATCATTATTACTAGAGAGTTCTTTAAATTTAAGATGCTATAAAAGTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTACTAGAGAGTTCTTTAAATTTAAGATGCTATAAAAGTTAAT  400

seq1  TAAGTGTGCACACTTTTACCAAAGTCAAAGAATTGTATTTATATCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGCACACTTTTACCAAAGTCAAAGAATTGTATTTATATCATTAT  450

seq1  GTATTCACTAGTTATATTACCTGGCATGATTAAAACTATCCTTAACTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACTAGTTATATTACCTGGCATGATTAAAACTATCCTTAACTAAT  500

seq1  TTTAAATAAAACCTAATGGAAACAATTAAAGATTAATGTCATTTCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAAACCTAATGGAAACAATTAAAGATTAATGTCATTTCAATAA  550

seq1  TTTCCTAAAATTACAATAATTAATTTAAAGTTGTAATGTTTTCCAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAAATTACAATAATTAATTTAAAGTTGTAATGTTTTCCAACTTT  600

seq1  GTAATAAGTTACTGTGTTCCTACATTTGTCATTGTATGTCCAACATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGTTACTGTGTTCCTACATTTGTCATTGTATGTCCAACATACAA  650

seq1  AGAAATAAGCCTAGGCTATTTCCACATCCTGAGCATGCCACAAAGAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGCCTAGGCTATTTCCACATCCTGAGCATGCCACAAAGAATTG  700

seq1  ACTCAGAAGGAACCATGCTACACTATCTCTGCCTGCCTGGTGATCATGCA  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTCAGAAGGAACCATGCTACACTATCTCTGCCTGCCTTGTGATCATGCA  750

seq1  GCAGCAGATTCTCCCAGGATCTGCAGCAATCTGAGCAGAAGAATCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGATTCTCCCAGGATCTGCAGCAATCTGAGCAGAAGAATCTTTCT  800

seq1  TCAATGCCGTACTGCCACCAAAATCCACAGAAATACA-GAGGGCTCTTGT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAATGCCGTACTGCCACCAAAATCCACAGAAATACAGGAGGGCTCTTGT  850

seq1  GCTGTTTTTGTATTGCCTAAATTTGAGCTTTTACATGCTGAATAATATTA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGTTTTTGTATTGCCTAAATTTGAGC-TTTACATGCTGAATAATATTA  899

seq1  CTTTTATTATTAGAACAGTATATAGATTTAGATCCAGTTTTATGTTTTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTATTAGAACAGTATATAGATTTAGATCCAGTTTTATGTTTTAC  949

seq1  ATATCGTCAGTTGGGAAAATGTCCAGAAACAGAATATTAAAACCAATATA  999
      ||||||||||||||| |||||||||||||||| ||||| |||||||||||
seq2  ATATCGTCAGTTGGG-AAATGTCCAGAAACAGGATATT-AAACCAATATA  997

seq1  GGGCCACCAGTTTTTGTCAACAGTTTTTAATGAGTAGATTATATATTTGC  1049
      |||||||||| |||||||||||||||||||||||| ||| || |||||||
seq2  GGGCCACCAG-TTTTGTCAACAGTTTTTAATGAGTGGATAAT-TATTTGC  1045

seq1  AGACAAACATCCCTCCATTCGGACTTTTCTTGCCTATGAAAAGTAAAACA  1099
      |||||| | ||||||||||||||||||||| ||   ||||| |  |||||
seq2  AGACAACCTTCCCTCCATTCGGACTTTTCTGGCTATTGAAAGG--AAACA  1093

seq1  TTGCTTTCTCTCCTGCTCTCATGACCCTCCTAATCCCATAACACCATTTT  1149
       ||| ||||||||||||| ||||  ||| |||   |  |||| | |||||
seq2  -TGCCTTCTCTCCTGCTC-CATGGACCT-CTA--TCTTTAAC-CAATTTT  1137

seq1  TTCTAAAAAGTCAAT  1164
      ||||  || ||||||
seq2  TTCT--AAGGTCAAT  1150