BAC Information

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BAC

Clone NameB6Ng01-081H19
Chromosome12 (Build37)
Map Location 113,029,935 - 113,180,759
singlet/doubletdoublet
Overlap geneKlc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
Upstream geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik
Downstream gene2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081H19.bB6Ng01-081H19.g
ACCDH896326DH896327
length684991
definitionDH896326|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H19, 5' end.DH896327|Mus musculus domesticus DNA, BAC clone: B6Ng01-081H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,029,935 - 113,030,616)(113,179,784 - 113,180,759)
sequence
acagaacagatggtagttgatctaaatcacagaaacaatttatatgggaa
ttcagggctttttttcagtgttcagaaatagactttaaaacaggataatg
tttgtcaaaggcaaggcttgctaggtagcaaccgtggctatgcagatgcg
tggctgtgtggtcgaggaggccgagagcgagggcatgaagacagtgagct
tgcctgggaggacagcagttcctcttcagtgtgtcttatgatgatggtga
tcacgcctcatggaaacgggctcctgcaggcttcctcgggtctgagatat
gagaaatatgatgtgagatatgatgtggctctagcaggcactgctatagt
aggtcactctctagtagggtgcattcctgcgaaagctgctttgtggacat
tgagtcttttctagataaaagtcagatttcttagttacccaatatccatg
tgattctgtgtctgttgtgaaagttgtgctccaggacagcctccaccttg
gctcctttttcttggggcccttgagaagcagtctcctgcccctcttctct
taaaccatattgctcttgtgctgagatttctacaagtctgagtgtgtgtg
tgtgtgtgtgcgtgtgtacactgtgccagttctagggattgaaacatccc
tgtggaagggaaggggttctacaactgactgtat
gaattcactctgtagaccaagctggtctagaactcagatttgccagcctc
ctgagtgctgggattaaaggcatgcgccagcactgcccagcttcgacaat
gtcttttggcctccatgaatactttaagtcatatgtgtgcacacacgaga
acacatgtgctcttgcacatacacactcacacacaccaataaaaatctta
acaagaaaaaaccatcccgagcactaattcttagggcctggactttgggt
tggggagccaggtttgcactgcagcggggctggccctcacttccaggctg
gggaagctatccagctcttccagcttctcctcaaatgggccacggccatg
gtagaagacagacctccttcatgcagcagcacggaagccagctctggaaa
cacctacccggggaagggagggatccagctccaggggctgccttaggaag
gcaggacgactcgcctgagatcacacaggaccatcaggaccgtcgcaggg
tctgtagatatatgtgtatttctcctgaaatcggggaaaataaactcatt
ttctgaggaaaatgtttataaatgtgtgatgttgacatatttgtctttct
agtgttacatagcagactgggaatcacaatggaggcgctcacacgtgtca
ctcactgacagactttgcccaaccccaaaccagctgttatctaacctaaa
gtgactggaagctaacccaatcagtattgtctccaccgctcccttatccc
tgtctcctcctacaggaaaaaataaactttgagataaaccatttctgatt
tgggggatgttgcctgtttctgttgacctttctccaaacttaaattccaa
aaccgcaggacactgggcacacgagtagggttttattttatgaaatgagg
gtctgcctcccatctgtaaatggaaagtaaatccaattaagatccttgac
acttaaatttgctgtaccttggctgggcaagatggctcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113029935_113030616
seq2: B6Ng01-081H19.b_37_720

seq1  ACAGAACAGATGGTAGTTGAT-TAAATCACAGAAACAATTTATATGGGAA  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGAACAGATGGTAGTTGATCTAAATCACAGAAACAATTTATATGGGAA  50

seq1  TTCAGGGCTTTTTTTCAGTGTTCAGAAATAGACTTTAAAACAGGATAATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCTTTTTTTCAGTGTTCAGAAATAGACTTTAAAACAGGATAATG  100

seq1  TTTGTCAAAGGCAAGGCTTGCTAGGTAGCAACCGTGGCTATGCAGATGCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAAGGCAAGGCTTGCTAGGTAGCAACCGTGGCTATGCAGATGCG  150

seq1  TGGCTGTGTGGTCGAGGAGGCCGAGAGCGAGGGCATGAAGACAGTGAGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTGGTCGAGGAGGCCGAGAGCGAGGGCATGAAGACAGTGAGCT  200

seq1  TGCCTGGGAGGACAGCAGTTCCTCTTCAGTGTGTCTTATGATGATGGTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAGGACAGCAGTTCCTCTTCAGTGTGTCTTATGATGATGGTGA  250

seq1  TCACGCCTCATGGAAACGGGCTCCTGCAGGCTTCCTCGGGTCTGAGATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCTCATGGAAACGGGCTCCTGCAGGCTTCCTCGGGTCTGAGATAT  300

seq1  GAGAAATATGATGTGAGATATGATGTGGCTCTAGCAGGCACTGCTATAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATATGATGTGAGATATGATGTGGCTCTAGCAGGCACTGCTATAGT  350

seq1  AGGTCACTCTCTAGTAGGGTGCATTCCTGCGAAAGCTGCTTTGTGGACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTCTCTAGTAGGGTGCATTCCTGCGAAAGCTGCTTTGTGGACAT  400

seq1  TGAGTCTTTTCTAGATAAAAGTCAGATTTCTTAGTTACCCAATATCCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTTTCTAGATAAAAGTCAGATTTCTTAGTTACCCAATATCCATG  450

seq1  TGATTCTGTGTCTGTTGTGAAAGTTGTGCTCCAGGACAGCCTCCACCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTGTCTGTTGTGAAAGTTGTGCTCCAGGACAGCCTCCACCTTG  500

seq1  GCTCCTTTTTCTTGGGGCCCTTGAGAAGCAGTCTCCTGCCCCTCTTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTTTCTTGGGGCCCTTGAGAAGCAGTCTCCTGCCCCTCTTCTCT  550

seq1  TAAACCATATTGCTCTTGTGCTGAGATTTCTACAAGTCTGAGTGTGTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATATTGCTCTTGTGCTGAGATTTCTACAAGTCTGAGTGTGTGTG  600

seq1  TGTGTGTGTGCGTGTGTACACTGTGCCAGTACTAGGGATTGAAACATCCC  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTGTGTGCGTGTGTACACTGTGCCAGTTCTAGGGATTGAAACATCCC  650

seq1  TGTGGAAGGGAA-GGGCTCTACAACTGACTGTAT  682
      |||||||||||| ||| |||||||||||||||||
seq2  TGTGGAAGGGAAGGGGTTCTACAACTGACTGTAT  684

seq1: chr12_113179784_113180759
seq2: B6Ng01-081H19.g_62_1052 (reverse)

seq1  ACTGAGCCATCTTGCCAGCCCAAGTTACAGCAAATTTAAGTGTCAA-GAT  49
      | ||||||||||||||   ||||| ||||||||||||||||||||| |||
seq2  ATTGAGCCATCTTGCCCAGCCAAGGTACAGCAAATTTAAGTGTCAAGGAT  50

seq1  CTTAATTGGATTTACTTTCCATTTACAGAATGGA-GCAGAACCTCATTTC  98
      |||||||||||||||||||||||||||||  ||| ||||| |||||||||
seq2  CTTAATTGGATTTACTTTCCATTTACAGATGGGAGGCAGACCCTCATTTC  100

seq1  ATAAAAATAAAACCTACTCGTGTG-CCAGTGTCCTGCGGTTTTGG-ATTT  146
      ||||||  ||| |||||||||||| |||||||||||||||||||| ||||
seq2  ATAAAATAAAACCCTACTCGTGTGCCCAGTGTCCTGCGGTTTTGGAATTT  150

seq1  AAGTTTGGAGAAAGGTCAACAG-AACAGGC-ACATCCCCCAAATCAG-AA  193
      |||||||||||||||||||||| ||||||| |||||||||||||||| ||
seq2  AAGTTTGGAGAAAGGTCAACAGAAACAGGCAACATCCCCCAAATCAGAAA  200

seq1  TGGTTTATCTCAAAGTT--ATTTTTCCTGTA-GAGGAGACAGGGAT-AGG  239
      |||||||||||||||||   ||||||||||| |||||||||||||| |||
seq2  TGGTTTATCTCAAAGTTTATTTTTTCCTGTAGGAGGAGACAGGGATAAGG  250

seq1  GAGCGGTGGAGAC-ATACTGATT-GGTTAGCTTCCAGTCAC-TTAGGTTA  286
      ||||||||||||| ||||||||| ||||||||||||||||| ||||||||
seq2  GAGCGGTGGAGACAATACTGATTGGGTTAGCTTCCAGTCACTTTAGGTTA  300

seq1  GATAACAGCTGGTTTGGGGTT-GGCAAAGTCTGTCAGTGAGTGACACGTG  335
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATAACAGCTGGTTTGGGGTTGGGCAAAGTCTGTCAGTGAGTGACACGTG  350

seq1  TGAGCGCCTCCATTGTGATTCCCAGTCTGCTATGTAACACTAGAAAGACA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCCTCCATTGTGATTCCCAGTCTGCTATGTAACACTAGAAAGACA  400

seq1  AATATGTCAACATCACACATTTATAAACATTTTCCTCAGAAAATGAGTTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCAACATCACACATTTATAAACATTTTCCTCAGAAAATGAGTTT  450

seq1  ATTTTCCCCGATTTCAGGAGAAATACACATATATCTACAGACCCTGCGAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCCGATTTCAGGAGAAATACACATATATCTACAGACCCTGCGAC  500

seq1  GGTCCTGATGGTCCTGTGTGATCTCAGGCGAGTCGTCCTGCCTTCCTAAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGATGGTCCTGTGTGATCTCAGGCGAGTCGTCCTGCCTTCCTAAG  550

seq1  GCAGCCCCTGGAGCTGGATCCCTCCCTTCCCCGGGTAGGTGTTTCCAGAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCTGGAGCTGGATCCCTCCCTTCCCCGGGTAGGTGTTTCCAGAG  600

seq1  CTGGCTTCCGTGCTGCTGCATGAAGGAGGTCTGTCTTCTACCATGGCCGT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCGTGCTGCTGCATGAAGGAGGTCTGTCTTCTACCATGGCCGT  650

seq1  GGCCCATTTGAGGAGAAGCTGGAAGAGCTGGATAGCTTCCCCAGCCTGGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTTGAGGAGAAGCTGGAAGAGCTGGATAGCTTCCCCAGCCTGGA  700

seq1  AGTGAGGGCCAGCCCCGCTGCAGTGCAAACCTGGCTCCCCAACCCAAAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGCCAGCCCCGCTGCAGTGCAAACCTGGCTCCCCAACCCAAAGT  750

seq1  CCAGGCCCTAAGAATTAGTGCTCGGGATGGTTTTTTCTTGTTAAGATTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCTAAGAATTAGTGCTCGGGATGGTTTTTTCTTGTTAAGATTTT  800

seq1  TATTGGTGTGTGTGAGTGTGTATGTGCAAGAGCACATGTGTTCTCGTGTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGTGTGTGAGTGTGTATGTGCAAGAGCACATGTGTTCTCGTGTG  850

seq1  TGCACACATATGACTTAAAGTATTCATGGAGGCCAAAAGACATTGTCGAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATATGACTTAAAGTATTCATGGAGGCCAAAAGACATTGTCGAA  900

seq1  GCTGGGCAGTGCTGGCGCATGCCTTTAATCCCAGCACTCAGGAGGCTGGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCAGTGCTGGCGCATGCCTTTAATCCCAGCACTCAGGAGGCTGGC  950

seq1  AAATCTGAGTTCTAGACCAGCTTGGTCTACAGAGTGAATTC  976
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAGTTCTAGACCAGCTTGGTCTACAGAGTGAATTC  991