BAC Information

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BAC

Clone NameB6Ng01-081M11
Chromosome12 (Build37)
Map Location 57,690,806 - 57,815,296
singlet/doubletdoublet
Overlap geneNkx2-9, Pax9, Slc25a21
Upstream geneInsm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081M11.bB6Ng01-081M11.g
ACCDH896524DH896525
length1,050868
definitionDH896524|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M11, 5' end.DH896525|Mus musculus domesticus DNA, BAC clone: B6Ng01-081M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,690,806 - 57,691,862)(57,814,433 - 57,815,296)
sequence
gaattctttcaactacaatgtaatgcaaagaaaatccgcgctaattatga
gcaggaacattatctattaatatgttaatgaagcaggtttgctaatggtg
aaagacctgaattttaataaaatcttaagagctccttgattacgtgtttg
ttagtcgatctgatcatttaaaattatctctaggtggctttacatggaat
aaaacctacattagaactgtattctaaacaggccttaatgaagcaggtga
ggataccacctgtgacataaacacaggcagccagaaattcacttcaaaag
aaatggaaactagtgaacacgaaacatgttatcatacctgccagtaacag
ctttcaatgtaggtaatttatttatgcatttgcttgctaattttctcaaa
catatttgcttatgaaaataatgttcgattgaattaatggatactgcctt
tcaatattggaagtgttagtttttcataaaagaaatattctagtgtcctg
tttgacaacagcccacacatacatgaaagcttttatcccaaccgatccta
gatatcttttgaagaagacagtagtcatcaactatccaaggcacccagag
ttggtgtgtagggatatcaaaggtgtgcctctgaatagatgtgatcttgt
tctgtgttctccaagatgatcttggcatcaaagtgcctagttgtctgcat
ctgcatccgtagaaggtagggaaggcacttggcagccttaattttgcata
ttaaaatcctaaggctccgattagtgggtgagtttagaccgagatcctga
atatcccagagagcagagcaaaaccctctgatgtaagacctgcctctgtg
tgagcccaggagatgcaggggtggatggtcccagaagcttgcgttccagg
gctttcctgcggtgtagctgtggctcttccctgttctgaatgagcagtta
cacagggttaagtgaaggaagtgacattaatactagaagcccgatcattg
atcaagatcccaaatgaaggtgactgattggctgatttgtgctatttgac

gaattctttcttgaatacacccaaagatgatgccaattatgtctggaaaa
gagaaatctattgtgtagatgtgaggaatctgaacattttcttttgcaga
aaagtcccatgcctttttttgactaaatatgtctttatttatttactttt
ttttcaattgaaagttcttgaaaaagaatctgatgagaaatgatgaaagt
tgcaaaaactcagagggaaaaatgtatttggagactcaagatggtcttga
ttttgccctgagaattttccataatcgttttctatctgtgtatcagagcc
actgatgattctgaaagtccccagtctccccaataaggccccctgagact
tggtggcccagggttgggggtggagggagcagtgtccacaacccttccca
ggactgtaatgagatgtagctctcttctgttccaggtggtggggtgatgt
tgctggtgtatgaatacacctatgcatggctgcaggaaaactggtgatgg
actgagaagcgatttcctcttgacaaaacagctctgcatccccaggaaaa
gaagataagctagacacacccgttaagaggggaagacaacgtgctcagga
acaaagcctgttccagtgttttataaaattttttagataaattgacatgg
tagtttgggccatatacataacacaagtcaaaatttaaatatatttttat
taaggaattacttttccatacgttatatttttaaaagagaagtatgaaaa
atgtaaatactccaaaacagcccttttaagaatgtttaattttgtgagcg
ctgagttaaaatgtgaatctattggttttctttattatttatacaccctc
ggctctatttccctaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57690806_57691862
seq2: B6Ng01-081M11.b_47_1096

seq1  GAATTCTTTCAACTACAATGTAATGCAAAGAAAATCCGCGCTAATTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAACTACAATGTAATGCAAAGAAAATCCGCGCTAATTATGA  50

seq1  GCAGGAACATTATCTATTAATATGTTAATGAAGCAGGTTTGCTAATGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACATTATCTATTAATATGTTAATGAAGCAGGTTTGCTAATGGTG  100

seq1  AAAGACCTGAATTTTAATAAAATCTTAAGAGCTCCTTGATTACGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGAATTTTAATAAAATCTTAAGAGCTCCTTGATTACGTGTTTG  150

seq1  TTAGTCGATCTGATCATTTAAAATTATCTCTAGGTGGCTTTACATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGATCTGATCATTTAAAATTATCTCTAGGTGGCTTTACATGGAAT  200

seq1  AAAACCTACATTAGAACTGTATTCTAAACAGGCCTTAATGAAGCAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACATTAGAACTGTATTCTAAACAGGCCTTAATGAAGCAGGTGA  250

seq1  GGATACCACCTGTGACATAAACACAGGCAGCCAGAAATTCACTTCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCACCTGTGACATAAACACAGGCAGCCAGAAATTCACTTCAAAAG  300

seq1  AAATGGAAACTAGTGAACACGAAACATGTTATCATACCTGCCAGTAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAACTAGTGAACACGAAACATGTTATCATACCTGCCAGTAACAG  350

seq1  CTTTCAATGTAGGTAATTTATTTATGCATTTGCTTGCTAATTTTCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTAGGTAATTTATTTATGCATTTGCTTGCTAATTTTCTCAAA  400

seq1  CATATTTGCTTATGAAAATAATGTTCGATTGAATTAATGGATACTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGCTTATGAAAATAATGTTCGATTGAATTAATGGATACTGCCTT  450

seq1  TCAATATTGGAAGTGTTAGTTTTTCATAAAAGAAATATTCTAGTGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTGGAAGTGTTAGTTTTTCATAAAAGAAATATTCTAGTGTCCTG  500

seq1  TTTGACAACAGCCCACACATACATGAAAGCTTTTATCCCAACCGATCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAACAGCCCACACATACATGAAAGCTTTTATCCCAACCGATCCTA  550

seq1  GATATCTTTTGAAGAAGACAGTAGTCATCAACTATCCAAGGCACCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTTTGAAGAAGACAGTAGTCATCAACTATCCAAGGCACCCAGAG  600

seq1  TTGGTGTGTAGGGATATCAAAGGTGTGCCTCTGAATAGATGTGATCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGTAGGGATATCAAAGGTGTGCCTCTGAATAGATGTGATCTTGT  650

seq1  TCTGTGTTCTCCAAGATGATCTTGGCATCAAAGTGCCTAGTTGTCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCTCCAAGATGATCTTGGCATCAAAGTGCCTAGTTGTCTGCAT  700

seq1  CTGCATCCGTAGAAGGTAGGGAAGGCACTTGGCAGCCTTAATTTTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCGTAGAAGGTAGGGAAGGCACTTGGCAGCCTTAATTTTGCATA  750

seq1  TTAAAATCCTAAGGCTCCGATTAGTGGGTGAGTTTAGACCGAGATCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCTAAGGCTCCGATTAGTGGGTGAGTTTAGACCGAGATCCTGA  800

seq1  ATATCCCAGAGAGCAGAGCAAAACCCTCTGATGTAAGACCTGCCTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCAGAGAGCAGAGCAAAACCCTCTGATGTAAGACCTGCCTCTGTG  850

seq1  TGAGCCCAGGAGATGCAGGGGTGGATGGTCCCAGAAGCTTGCGTTCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGGAGATGCAGGGGTGGATGGTCCCAGAAGCTTGCGTTCCAGG  900

seq1  GCTTTCCTGCGGTGTAGCTGTGGCTCTTCCCTGTTCTGAATGAGCAGGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTTTCCTGCGGTGTAGCTGTGGCTCTTCCCTGTTCTGAATGAGCA-GTT  949

seq1  ACAACAGGGTTAAGTGAAGGAAGTGACATTAATACTAGAAGCCCCGAGTC  1000
      || |||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  AC-ACAGGGTTAAGTGAAGGAAGTGACATTAATACTAGAAG-CCCGA-TC  996

seq1  AGTGATCAAGATCCCAAATGTAGGTGACTGTATTGGCTGATTTTGTGTCA  1050
      | |||||||||||||||||| ||||||||| ||||||||| |||||| | 
seq2  ATTGATCAAGATCCCAAATGAAGGTGACTG-ATTGGCTGA-TTTGTG-CT  1043

seq1  ATTTGAC  1057
      |||||||
seq2  ATTTGAC  1050

seq1: chr12_57814433_57815296
seq2: B6Ng01-081M11.g_70_937 (reverse)

seq1  ATTTAGGGAAATAGAGCCTGAGGGTGTATTAATTACTAAAGAAAACCAAT  50
      | |||||||||||||||| ||||||||| ||| || ||||||||||||||
seq2  AATTAGGGAAATAGAGCC-GAGGGTGTA-TAAATAATAAAGAAAACCAAT  48

seq1  AGATTCACATTTTAACTCAGCGCTCACAAAATTAAACATTCTTAAAA-GG  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATTCACATTTTAACTCAGCGCTCACAAAATTAAACATTCTTAAAAGGG  98

seq1  CTGTTTTGGTGTATTTACATTTTTCTTACTTCTCTTTT-AAAATATAACG  148
      ||||||||| ||||||||||||||| |||||||||||| |||||||||||
seq2  CTGTTTTGGAGTATTTACATTTTTCATACTTCTCTTTTAAAAATATAACG  148

seq1  TATGGAAAAGTAATTCCTTA--TAAAATATATTTAAATTTTGACTTGTGT  196
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TATGGAAAAGTAATTCCTTAATAAAAATATATTTAAATTTTGACTTGTGT  198

seq1  TATGTATATGGCCCAAACTACCATGTCAATTTATCTAAAAA--TTTATAA  244
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TATGTATATGGCCCAAACTACCATGTCAATTTATCTAAAAAATTTTATAA  248

seq1  AACACTGGAACAGGCTTTGTTCCTGAGCACGTTGTCTTCCCCTCTTAACG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGAACAGGCTTTGTTCCTGAGCACGTTGTCTTCCCCTCTTAACG  298

seq1  GGTGTGTCTAGCTTATCTTCTTTTCCTGGGGATGCAGAGCTGTTTTGTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTAGCTTATCTTCTTTTCCTGGGGATGCAGAGCTGTTTTGTCA  348

seq1  AGAGGAAATCGCTTCTCAGTCCATCACCAGTTTTCCTGCAGCCATGCATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATCGCTTCTCAGTCCATCACCAGTTTTCCTGCAGCCATGCATA  398

seq1  GGTGTATTCATACACCAGCAACATCACCCCACCACCTGGAACAGAAGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTCATACACCAGCAACATCACCCCACCACCTGGAACAGAAGAGA  448

seq1  GCTACATCTCATTACAGTCCTGGGAAGGGTTGTGGACACTGCTCCCTCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCTCATTACAGTCCTGGGAAGGGTTGTGGACACTGCTCCCTCCA  498

seq1  CCCCCAACCCTGGGCCACCAAGTCTCAGGGGGCCTTATTGGGGAGACTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCCTGGGCCACCAAGTCTCAGGGGGCCTTATTGGGGAGACTGG  548

seq1  GGACTTTCAGAATCATCAGTGGCTCTGATACACAGATAGAAAACGATTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCAGAATCATCAGTGGCTCTGATACACAGATAGAAAACGATTAT  598

seq1  GGAAAATTCTCAGGGCAAAATCAAGACCATCTTGAGTCTCCAAATACATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCTCAGGGCAAAATCAAGACCATCTTGAGTCTCCAAATACATT  648

seq1  TTTCCCTCTGAGTTTTTGCAACTTTCATCATTTCTCATCAGATTCTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTGAGTTTTTGCAACTTTCATCATTTCTCATCAGATTCTTTTT  698

seq1  CAAGAACTTTCAATTGAAAAAAAAGTAAATAAATAAAGACATATTTAGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTTCAATTGAAAAAAAAGTAAATAAATAAAGACATATTTAGTC  748

seq1  AAAAAAAGGCATGGGACTTTTCTGCAAAAGAAAATGTTCAGATTCCTCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGCATGGGACTTTTCTGCAAAAGAAAATGTTCAGATTCCTCAC  798

seq1  ATCTACACAATAGATTTCTCTTTTCCAGACATAATTGGCATCATCTTTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACAATAGATTTCTCTTTTCCAGACATAATTGGCATCATCTTTGG  848

seq1  GTGTATTCAAGAAAGAATTC  864
      ||||||||||||||||||||
seq2  GTGTATTCAAGAAAGAATTC  868