BAC Information

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BAC

Clone NameB6Ng01-081O20
Chromosome12 (Build37)
Map Location 28,974,999 - 28,976,118
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081O20.bB6Ng01-081O20.g
ACCDH896634DH896635
length1,2661,122
definitionDH896634|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O20, 5' end.DH896635|Mus musculus domesticus DNA, BAC clone: B6Ng01-081O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatggccattccattaataacaatatccaagatataaaaacac
ctaaatgttcatcagtggaagatgggatgaagaaaacttatgtttataga
caactgaatattattctgctatttataaaaacaaaacaaaacaaaacaac
aacaaaacaagatcctatcatctatttcaacataagtaaatccgggtgac
aaggacatgaagtcagctagacaaaaaggggcagaaactgaatgatctta
tacgtagtgcctaaaactgctcatctcttagaagcagaaatgctacagtg
gttctgtgcctagaaaaagtaaaggaaatactagccagccgataatgatt
ggaatctcaggataaaagttcttgggactgtagtagggttggttcacttt
aataagaaagtatattgaagcatctttatcaaagggtctggagagattgc
tcagctgataaaagaactgtctgctctccaaaccaaggtttggttccctg
cacctacatggtagctcacaactgtctctaacttcaatcctaggggtttt
gatgtccccttctggcctccacagggattgcacacttgaaagtagacata
tacatgcaggcaaaacactgacacatattagataaaaataaatttaaaaa
gcacagtctttacacaaacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacagacagatggcaaccct
gggaagttttacctttctgttgctgagataaacactgtaacaaagacacc
ttatacaccttatagaaggaagagttttactcaggcttatggttccagaa
gtttatggtagggaattatggcacccaagcagaaattgtggtgtcagaag
cagcaactgagagttcacatctttaaactacaaacaccaaacacagagag
caaactggaagtggtgcaaggatttaaactgtcagacccaccctcagtga
cgtacttccttcagcagtccatacttcctaaactttcctcaaaacagcgc
caccactggggacagagttttcagagatctgagctatgggggtcattctt
cacttaaaccaccacattcacactcctgtcctccatagggctccacgccc
ccacgcattaatgtgaaatgaatttgtactgttccaccttgacgtcctta
tgtcttacggcctcctacagtttatcaattcatacgtcgagctctctctc
tggtgattcgatgtac
gaattctttaaaatgactggcacagaacaagactgaccaaaactctcaac
gatgtctggccacttgtcaaaaatgcatgtcacctaagatcctaatccac
ctcagcccgagccttgtatcagtgtgataagcctagctatgtgggttgaa
cttttctctctcgtctaatcttacccacatgtatgtatgtgcaccatgtc
agtgtgctgcctaaagagaacagaagtagccatcagctccctgggactag
agttacatgtggcttaagccaccatgtcgatgctaggactgaaccccagt
cctctgccaaaacagctgcttggtcactcctctctagtctcaatatatga
acattttaagactttaaataattgaaaaggagagaaaagaattcttttga
atttctccatcagtccagtgatattggacggggacaggatgtacactaaa
agcacgctctggagtctagctgtactcttgagagtctgcttggctatttc
atagtccctataagagatcacatcttgtaaatgactctgaagtccacaga
gaccagaaccagtgtcaccttctttgtctgccaagccatcatcaagctgt
gtcaggcttgttagagagtgaagcctgctgtactttttaacaagacatcc
actaagcctgaatgggggcagtttgagacacatctgagacatctgtcatt
tcctaatgcatcaagggaggaatcggtgacaagcttccagtgacagtgag
cagggggggaaaacatgtcacgctgttcacactgtccacacagtaatttt
ccttggggacagttatgactttgtactgtcatttgcttcagagtgatgag
gtattacaaagacagcttagatgtgtccttaaattgcttaaagttgagaa
aataagtgatagaccactgtcagaagcatttacatctggcgatgtgtgtg
acgaaccttctgttgggtgggatgagattgggagaatgaacataggatct
tcagctttaattgcatatgcatgagatcaaatcatccctagattgccttt
caaagggcatcgatttaatctttaaaacaaaaagtcctatgccctttatt
cctgtaggaaaggcaggctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28974999_28976118
seq2: B6Ng01-081O20.g_71_1192

seq1  GAATTCTTTAAAATGACTGGCACAGAACAAGACTGACCAAAACTCTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATGACTGGCACAGAACAAGACTGACCAAAACTCTCAAC  50

seq1  GATGTCTGGCCACTTGTCAAAAATGCATGTCACCTAAGATCCTAATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGCCACTTGTCAAAAATGCATGTCACCTAAGATCCTAATCCAC  100

seq1  CTCAGCCCGAGCCTTGTATCAGTGTGATAAGCCTAGCTATGTGGGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCGAGCCTTGTATCAGTGTGATAAGCCTAGCTATGTGGGTTGAA  150

seq1  CTTTTCTCTCTCGTCTAATCTTACCCACATGTATGTATGTGCACCATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTCTCGTCTAATCTTACCCACATGTATGTATGTGCACCATGTC  200

seq1  AGTGTGCTGCCTAAAGAGAACAGAAGTAGCCATCAGCTCCCTGGGACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTGCCTAAAGAGAACAGAAGTAGCCATCAGCTCCCTGGGACTAG  250

seq1  AGTTACATGTGGCTTAAGCCACCATGTCGATGCTAGGACTGAACCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATGTGGCTTAAGCCACCATGTCGATGCTAGGACTGAACCCCAGT  300

seq1  CCTCTGCCAAAACAGCTGCTTGGTCACTCCTCTCTAGTCTCAATATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCAAAACAGCTGCTTGGTCACTCCTCTCTAGTCTCAATATATGA  350

seq1  ACATTTTAAGACTTTAAATAATTGAAAAGGAGAGAAAAGAATTCTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAGACTTTAAATAATTGAAAAGGAGAGAAAAGAATTCTTTTGA  400

seq1  ATTTCTCCATCAGTCCAGTGATATTGGACGGGGACAGGATGTACACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCATCAGTCCAGTGATATTGGACGGGGACAGGATGTACACTAAA  450

seq1  AGCACGCTCTGGAGTCTAGCTGTACTCTTGAGAGTCTGCTTGGCTATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCTCTGGAGTCTAGCTGTACTCTTGAGAGTCTGCTTGGCTATTTC  500

seq1  ATAGTCCCTATAAGAGATCACATCTTGTAAATGACTCTGAAGTCCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCCCTATAAGAGATCACATCTTGTAAATGACTCTGAAGTCCACAGA  550

seq1  GACCAGAACCAGTGTCACCTTCTTTGTCTGCCAAGCCATCATCAAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAACCAGTGTCACCTTCTTTGTCTGCCAAGCCATCATCAAGCTGT  600

seq1  GTCAGGCTTGTTAGAGAGTGAAGCCTGCTGTAC-TTTTAACAAGACATCC  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCAGGCTTGTTAGAGAGTGAAGCCTGCTGTACTTTTTAACAAGACATCC  650

seq1  ACTAAGCCTGAATGGGGGCAG-TTGAGACACATCTGAGACATCTGTCATT  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTAAGCCTGAATGGGGGCAGTTTGAGACACATCTGAGACATCTGTCATT  700

seq1  TCCTAATGCATCAA-GGAGGAATCGGTGACAAGCTTCCAGTGACAGTGAG  747
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTAATGCATCAAGGGAGGAATCGGTGACAAGCTTCCAGTGACAGTGAG  750

seq1  CA-GGGGGGAAAACATGTCAGGCTGTTCACACTGTCCACACAGTAATTTT  796
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGGGGGGGAAAACATGTCACGCTGTTCACACTGTCCACACAGTAATTTT  800

seq1  CCTTGGGGACAGTTATGACTTTGTACTGTCATTTGCTTCAGAGTGATGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGACAGTTATGACTTTGTACTGTCATTTGCTTCAGAGTGATGAG  850

seq1  GTATTACAAAGACAGCTTAGATGTGTCCTTAAATTGCTTAAAGTTGAGAA  896
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATTACAAAGACAGCTTAGATGTGTCCTTAAATTGCTTAAAGTTGAG-A  899

seq1  AAATAAGTGATAGACCACTGTCAGAAGCAATAACATCTGGCGATGTGTGT  946
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  AAATAAGTGATAGACCACTGTCAGAAGCATTTACATCTGGCGATGTGTGT  949

seq1  GACGAACC-TCTG-TGGGTGAGATGAGATTGGGAG-ATGAACATATGATC  993
      |||||||| |||| |||||| |||||||||||||| ||||||||| ||||
seq2  GACGAACCTTCTGTTGGGTGGGATGAGATTGGGAGAATGAACATAGGATC  999

seq1  TTCAACTTTAATTGCATTAATGCATGAGAATCAAAATCATCCCTAGATTG  1043
      |||| ||||||||||||  ||||||||| ||| |||||||||||||||||
seq2  TTCAGCTTTAATTGCAT--ATGCATGAG-ATC-AAATCATCCCTAGATTG  1045

seq1  GCTTTCCAATGGCCATCGATTTAAATTCTTAAACAAAAAGTTCATAGCCC  1093
       |||| ||| || |||||||||||  | | |||||||||| || ||  ||
seq2  CCTTT-CAAAGGGCATCGATTTAATCTTTAAAACAAAAAG-TCCTATGCC  1093

seq1  CTTTA-TCCTGTAGGAAA-GCAAGCTGTT  1120
      ||||| |||||||||||| ||| ||||||
seq2  CTTTATTCCTGTAGGAAAGGCAGGCTGTT  1122