BAC Information

Click to search

BAC

Clone NameB6Ng01-081P21
Chromosome12 (Build37)
Map Location 56,912,596 - 57,109,988
singlet/doubletdoublet
Overlap geneGarnl1, Brms1l, LOC100039915
Upstream geneCfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P21.bB6Ng01-081P21.g
ACCDH896682DH896683
length3151,122
definitionDH896682|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P21, 5' end.DH896683|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,912,596 - 56,912,910)(57,108,853 - 57,109,988)
sequence
accctaggggcaaggggtgtgagacaaagagacagctcagtgaataaaaa
tactggctgtttttccagaggaccagaatttgattcccagcccccatacg
gtggcttacaccaactataaaatcagttctcagggctccaaagacctttt
ctgacctctcaggcaccaagaacacaagtggtacacaaacacacatgcag
gcaatcactcatacaaacaaaataaaaatatttttaaagtgagtatttct
ctaaactaaatacaacaagaaataaataccaagacaacattggggggggt
gtacatggtgggggg
gaattcatcttttagatcaaagtactaggaaatcaccactttttaattct
ttttctgcttattaacttcataccccgctcactgcgccccctcctgatta
ccattcttcccccatctctcctaaccatagtggatagtaacctcccctcc
ctcccacggaataaatttcatgagtatgcttaggaataatggtcttaatg
tttattctttggagggaaattccagtctgtcatatgattgttaattcagg
cccaattttcctaaggctatttaacaataataatagaaaatgcttcatat
tttgaaatgaaaatccttcctgcggaaaaaaatacttcaatttcctttta
aatttaagagaaagaacaatatctgtgttttaaaaaatgaaaataaaaaa
acctatagattctagtttgccaaagagtaacacagaatccacattacagg
cctgagttacaccagcaaatatcagtatttagaataatttggggctaagc
ataggtctatagaacacacttcaatctaagaacaagaatacttatttata
aaagtcaaaaatccttactccactataccttaccagttcaaatgagggaa
catgctttgagatttccttagccatcataagacattttctcaaattgcac
ctggaatccgcaggaggaaatgcaggccaggttgtcacaccagtatgcca
gatcaagagctggcgagcagagagatgaatgggaagggaagaggctaata
ggtctcccatgccgcagaattattcatatttaggtcaagaacagccaaaa
ctagtcaccgaaagcaaagtaaagacaggaagtttaacagaaatataaag
cgtgaagaaattcttgctggttgcctatctctctcctgtgtctgtgttca
tctctggacacgtgcagttcctatgagcagattattgggataagtttaca
ttttaggttctaggacaacgagcttgaatacacctgttaccaattcacaa
aaggtttagaagagtaataaattcaagccctaatgcttagagaaggcatg
tcatcttaaatatccaagaaacgcgctgctcaggaatatgctatctctgg
agctatttcacatagacgcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56912596_56912910
seq2: B6Ng01-081P21.b_50_364

seq1  ACCCTAGGGGCAAGGGGTGTGAGACAAAGAGACAGCTCAGTGAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGGGCAAGGGGTGTGAGACAAAGAGACAGCTCAGTGAATAAAAA  50

seq1  TACTGGCTGTTTTTCCAGAGGACCAGAATTTGATTCCCAGCCCCCATACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTGTTTTTCCAGAGGACCAGAATTTGATTCCCAGCCCCCATACG  100

seq1  GTGGCTTACACCAACTATAAAATCAGTTCTCAGGGCTCCAAAGACCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTACACCAACTATAAAATCAGTTCTCAGGGCTCCAAAGACCTTTT  150

seq1  CTGACCTCTCAGGCACCAAGAACACAAGTGGTACACAAACACACATGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTCAGGCACCAAGAACACAAGTGGTACACAAACACACATGCAG  200

seq1  GCAATCACTCATACAAACAAAATAAAAATATTTTTAAAGTGAGTATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACTCATACAAACAAAATAAAAATATTTTTAAAGTGAGTATTTCT  250

seq1  CTAAACTAAATACAACAAGAAATAAATACCAAGACAACATTGGGGGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAAATACAACAAGAAATAAATACCAAGACAACATTGGGGGGGGT  300

seq1  GTACATGGTGGGGGG  315
      |||||||||||||||
seq2  GTACATGGTGGGGGG  315

seq1: chr12_57108853_57109988
seq2: B6Ng01-081P21.g_68_1189 (reverse)

seq1  CGGGCGTCTAGTTGGAAAATATGCTCCAGAGATAGCATA-TCCTGATGCA  49
      ||||||||||  ||  ||||| ||||||||||||||||| |||||| |||
seq2  CGGGCGTCTA--TGTGAAATA-GCTCCAGAGATAGCATATTCCTGA-GCA  46

seq1  GCGCGTTTCTGTGGATATTTAAGATGACATTGCCTATCTCTAAGGCCCTT  99
      |||||||||| |||||||||||||||||| ||||| ||||||||  | ||
seq2  GCGCGTTTCT-TGGATATTTAAGATGACA-TGCCT-TCTCTAAG--CATT  91

seq1  A-GGCTTGAATCTAATTTACTCTCTTAAAACCTTTTGTGAATGGTAAACA  148
      | ||||||||| ||  ||||||| |  ||||||||||||||| |  ||||
seq2  AGGGCTTGAATTTA--TTACTCT-TCTAAACCTTTTGTGAATTGGTAACA  138

seq1  GTTGTATTCAAGCTCGGTGTCCTAGAACCTAAAATGTAAAATTAATCCAA  198
      | |||||||||||||| ||||||||||||||||||||||| || |||| |
seq2  GGTGTATTCAAGCTCGTTGTCCTAGAACCTAAAATGTAAACTT-ATCCCA  187

seq1  ATAATCTGCTCATAGGAACTGCACGTTGTCCAGAGATGAACACAGGACAC  248
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  ATAATCTGCTCATAGGAACTGCACG-TGTCCAGAGATGAACACA-GACAC  235

seq1  AGGAGAGAAGATAGGCAACCAGCAAGAATTTCTTCACGCTTTATATTTCT  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAG-AGATAGGCAACCAGCAAGAATTTCTTCACGCTTTATATTTCT  284

seq1  GTTAAACTTCCTGTCTTTACTTTGCTTTCGGTGACTAGTTTTGGCTGTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTCCTGTCTTTACTTTGCTTTCGGTGACTAGTTTTGGCTGTTC  334

seq1  TTGACCTAAATATGAATAATTCTGCGGCATGGGAGACCTATTAGCCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAAATATGAATAATTCTGCGGCATGGGAGACCTATTAGCCTCTT  384

seq1  CCCTTCCCATTCATCTCTCTGCTCGCCAGCTCTTGATCTGGCATACTGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCATTCATCTCTCTGCTCGCCAGCTCTTGATCTGGCATACTGGT  434

seq1  GTGACAACCTGGCCTGCATTTCCTCCTGCGGATTCCAGGTGCAATTTGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACCTGGCCTGCATTTCCTCCTGCGGATTCCAGGTGCAATTTGAG  484

seq1  AAAATGTCTTATGATGGCTAAGGAAATCTCAAAGCATGTTCCCTCATTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTTATGATGGCTAAGGAAATCTCAAAGCATGTTCCCTCATTTG  534

seq1  AACTGGTAAGGTATAGTGGAGTAAGGATTTTTGACTTTTATAAATAAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTAAGGTATAGTGGAGTAAGGATTTTTGACTTTTATAAATAAGTA  584

seq1  TTCTTGTTCTTAGATTGAAGTGTGTTCTATAGACCTATGCTTAGCCCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTCTTAGATTGAAGTGTGTTCTATAGACCTATGCTTAGCCCCAA  634

seq1  ATTATTCTAAATACTGATATTTGCTGGTGTAACTCAGGCCTGTAATGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTAAATACTGATATTTGCTGGTGTAACTCAGGCCTGTAATGTGG  684

seq1  ATTCTGTGTTACTCTTTGGCAAACTAGAATCTATAGGTTTTTTTATTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTTACTCTTTGGCAAACTAGAATCTATAGGTTTTTTTATTTTC  734

seq1  ATTTTTTAAAACACAGATATTGTTCTTTCTCTTAAATTTAAAAGGAAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAACACAGATATTGTTCTTTCTCTTAAATTTAAAAGGAAATT  784

seq1  GAAGTATTTTTTTCCGCAGGAAGGATTTTCATTTCAAAATATGAAGCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTTTTTTCCGCAGGAAGGATTTTCATTTCAAAATATGAAGCATT  834

seq1  TTCTATTATTATTGTTAAATAGCCTTAGGAAAATTGGGCCTGAATTAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTATTATTGTTAAATAGCCTTAGGAAAATTGGGCCTGAATTAACA  884

seq1  ATCATATGACAGACTGGAATTTCCCTCCAAAGAATAAACATTAAGACCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGACAGACTGGAATTTCCCTCCAAAGAATAAACATTAAGACCAT  934

seq1  TATTCCTAAGCATACTCATGAAATTTATTCCGTGGGAGGGAGGGGAGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAAGCATACTCATGAAATTTATTCCGTGGGAGGGAGGGGAGGTT  984

seq1  ACTATCCACTATGGTTAGGAGAGATGGGGGAAGAATGGTAATCAGGAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCACTATGGTTAGGAGAGATGGGGGAAGAATGGTAATCAGGAGGG  1034

seq1  GGCGCAGTGAGCGGGGTATGAAGTTAATAAGCAGAAAAAGAATTAAAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAGTGAGCGGGGTATGAAGTTAATAAGCAGAAAAAGAATTAAAAAG  1084

seq1  TGGTGATTTCCTAGTACTTTGATCTAAAAGATGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTTCCTAGTACTTTGATCTAAAAGATGAATTC  1122