BAC Information

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BAC

Clone NameB6Ng01-082F19
Chromosome12 (Build37)
Map Location 99,211,184 - 99,309,099
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
Downstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F19.bB6Ng01-082F19.g
ACCDH896936DH896937
length1,1371,065
definitionDH896936|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F19, 5' end.DH896937|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,211,184 - 99,212,337)(99,308,025 - 99,309,099)
sequence
gaattcttacagggaagaggaattacatttttcatgatattgttcccagt
gctgggactatgccaggagttcagtgactctcctacacagacacagacac
acacacacacacacacacacacacacacacacacacacacacacaaacac
acacacacacacacacacacacacagtatagttgtctaaaacaactggtg
ttgtaacactcatcatctctccttccagacaaagaaaagagcaagatgcc
tactgccacatcctctcacctttgagtgatgttagcatatcatgcaaatt
gcttgtacaacaaccaccacaccctttttgcttactaaaagaaacccagt
attgttcagctagtaacagtagcgtgcgcaaggaaaactcaccttgaagt
agagtaagaattagaactactcctataatactagctgttaacttgggaat
ggtgatgtgacccaatcctgatcattgcaacctggaaggaagtactttta
gggagacccttttgttcttataatacaaggataaagaatgggtagaagct
gactagaacacagaggtaactgggagtcacaactggacaagcttaaaacc
tccccttgtggtctgactctgacttttaaaaccaatttctatcaggtatt
ttgctgaaactgaagttatactaataagaaaataataatttaaatttcca
ttaccttgtcatgagagcttcttagaaaatatcacgctattttgcatcat
ttgaatgccttttaaaaatacacttgaaaatggaaggacagaggagaaac
aaacaaaaatttacaatgaatctatttccttacatgttagagaaaataat
aggtccaagattatctatcttcccaaacagatacaaatgataaagttggg
gcatgggtaggcgagtgcattccttagcttcagaaccagacaccaaacag
gtagaaaggcagagataataaagcactgaaagatgggagcagagcccatg
cagctttgcaggcctttgactgtgtgatttgcatggggttgaaaggagac
tccacaggctacctggccttctgccagaggactgatagtagttctatgaa
aggacagcctcaggatggccactattgggagtgagtt
agaagaaagagtttatttttggctcacagttctaggatgttatcaagttt
atcacggttgggaggccatggcagtagggctataggaaaacaatcacatt
gtgctcatacccaggaagctgagaataatgaagaaagtgctcagaccact
ttattagttttatacaactcagtatcccagactaggggtactgataatta
accagcttcagagactataattgcttcaaagattatagttgttcctaata
ttccttaattttatgaatatatttatgtggatatgtttatgtgtatatta
gaattcttttgtctccttatctaatataaatggtattaatattggttcat
ttattctcagtacttaaattacaagatatcagagaacatatgaaaatagt
taaaggtttgcatactcttttgcagagttactttatttggggttgtatac
agagtacttacacccctctagctggaaatgtacttttttttgttatcatg
gggtaagaagctacgtactagttctgacttgatgaggaatgaattgttag
ttatgtgtgtacgagacaagattactgctaggactctctactccgacacc
agtttaggtgttgtggtagaactactttctagatggcattaatatttaca
tttagggcctggttgtaaccttagcattctcgcgaagtagatctctgtga
gttctagatcaagccaggactatgtagagagacacttcctcaaaataaca
acaataacaaaaaacagcaagcaaacaaatacagaggaaaaaagcaatag
catttatgctcagtagtttaaataatggatatcatttctaatatatgggt
atgcctatccatttatctgaaggatctcaagagtaaaactcagtgttaat
attactgcaactacgtagcaaattaacttctcttgaagctggctgatatc
attactgaaagttatagtacttgttccacagttcattccaaatttccctt
gccttcaaagttacgtgcatggttaacctcagcctatcatttggtggaga
gggacaccatccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_99211184_99212337
seq2: B6Ng01-082F19.b_47_1183

seq1  GAATTCTTACAGGGAAGAGGAATTACATTTTTCATGATATTGTTCCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGGGAAGAGGAATTACATTTTTCATGATATTGTTCCCAGT  50

seq1  GCTGGGACTATGCCAGGAGTTCAGTGACTCTCCTACACAGACACAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTATGCCAGGAGTTCAGTGACTCTCCTACACAGACACAGACAC  100

seq1  ACACACACACACACACACACACACACACACACACACACACACACAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACAAACAC  150

seq1  ACACACACACACACACACACACACAGTATAGTTGTCTAAAACAACTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAGTATAGTTGTCTAAAACAACTGGTG  200

seq1  TTGTAACACTCATCATCTCTCCTTCCAGACAAAGAAAAGAGCAAGATGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACACTCATCATCTCTCCTTCCAGACAAAGAAAAGAGCAAGATGCC  250

seq1  TACTGCCACATCCTCTCACCTTTGAGTGATGTTAGCATATCATGCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCACATCCTCTCACCTTTGAGTGATGTTAGCATATCATGCAAATT  300

seq1  GCTTGTACAACAACCACCACACCCTTTTTGCTTACTAAAAGAAACCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTACAACAACCACCACACCCTTTTTGCTTACTAAAAGAAACCCAGT  350

seq1  ATTGTTCAGCTAGTAACAGTAGCGTGCGCAAGGAAAACTCACCTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAGCTAGTAACAGTAGCGTGCGCAAGGAAAACTCACCTTGAAGT  400

seq1  AGAGTAAGAATTAGAACTACTCCTATAATACTAGCTGTTAACTTGGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAATTAGAACTACTCCTATAATACTAGCTGTTAACTTGGGAAT  450

seq1  GGTGATGTGACCCAATCCTGATCATTGCAACCTGGAAGGAAGTACTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTGACCCAATCCTGATCATTGCAACCTGGAAGGAAGTACTTTTA  500

seq1  GGGAGACCCTTTTGTTCTTATAATACAAGGATAAAGAATGGGTAGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACCCTTTTGTTCTTATAATACAAGGATAAAGAATGGGTAGAAGCT  550

seq1  GACTAGAACACAGAGGTAACTGGGAGTCACAACTGGACAAGCTTAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAACACAGAGGTAACTGGGAGTCACAACTGGACAAGCTTAAAACC  600

seq1  TCCCCTTGTGGTCTGACTCTGACTTTTAAAACCAATTTCTATCAGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGTGGTCTGACTCTGACTTTTAAAACCAATTTCTATCAGGTATT  650

seq1  TTGCTGAAACTGAAGTTATACTAATAAGAAAATAATAATTTAAATTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAACTGAAGTTATACTAATAAGAAAATAATAATTTAAATTTCCA  700

seq1  TTACCTTGTCATGAGAGCTTCTTAGAAAATATCACGCTATTTTGCATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTCATGAGAGCTTCTTAGAAAATATCACGCTATTTTGCATCAT  750

seq1  TTGAATGCCTTTTAAAAATACACTTGAAAATGGAAGGACAGAGGAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCCTTTTAAAAATACACTTGAAAATGGAAGGACAGAGGAGAAAC  800

seq1  AAACAAAAATTTACAATGAATCTATTTCCTTACATGTTAGAGAAAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATTTACAATGAATCTATTTCCTTACATGTTAGAGAAAATAAT  850

seq1  AGGTCCAAGATTATCTATCTTCCCAAACAGATACAAATGATAAAGTTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAAGATTATCTATCTTCCCAAACAGATACAAATGATAAAGTTGGG  900

seq1  GCATGGGTAGGCGAGTGCATTCCTTAGCTTCAGAACCAGAACACCAAACA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GCATGGGTAGGCGAGTGCATTCCTTAGCTTCAGAACCAG-ACACCAAAC-  948

seq1  AGGTAGAAAGGCAGAGATAAATAAAGCAACTGAAAGATGGGAGCAGAGCC  1000
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AGGTAGAAAGGCAGAGAT-AATAAAGC-ACTGAAAGATGGGAGCAGAGCC  996

seq1  CATGCAGGCTTTGCAGGCCTTTTGACTGTGTGGATTTGCATGGGGTTGAA  1050
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  CATGCA-GCTTTGCAGGCC-TTTGACTGTGT-GATTTGCATGGGGTTGAA  1043

seq1  AGGAAGACTCCACAGGCTACCTGGCCTTTCTGCACAGAGGACTGATAAGT  1100
      ||| |||||||||||||||||||||| |||||| |||||||||||| |||
seq2  AGG-AGACTCCACAGGCTACCTGGCC-TTCTGC-CAGAGGACTGAT-AGT  1089

seq1  TAAGTTCCTATGAAAGGGACAGCCTCAAGGATGGCCACTATTGGGAGTTG  1150
        |||| |||||||| |||||||||| |||||||||||||||||||| ||
seq2  --AGTT-CTATGAAA-GGACAGCCTC-AGGATGGCCACTATTGGGAG-TG  1133

seq1  AGTT  1154
      ||||
seq2  AGTT  1137

seq1: chr12_99308025_99309099
seq2: B6Ng01-082F19.g_73_1137 (reverse)

seq1  TCTGTGATGGTTGTCCCTCT-CACCAAATTGATA-GCTGAGGTTAACCAT  48
      |||| ||||| ||||||||| ||||||| ||||| |||||||||||||| 
seq2  TCTG-GATGG-TGTCCCTCTCCACCAAA-TGATAGGCTGAGGTTAACCA-  46

seq1  TGCACGTTACTTTTTGAAGGCAAGGGAAATTTGGAATGAACTGTGGAACA  98
      ||||||| ||  ||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTAAC--TTTGAAGGCAAGGGAAATTTGGAATGAACTGTGGAACA  94

seq1  AGTACTTATAACTTTCAGTAATGATAATCAGCCAGCTTCAAGAGAAGTTA  148
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTAC-TATAACTTTCAGTAATGAT-ATCAGCCAGCTTCAAGAGAAGTTA  142

seq1  ATTTTGCTACGTAGTTGCAGTAATATTAACACTGAGTTTTACTCTTGAGA  198
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTGCTACGTAGTTGCAGTAATATTAACACTGAGTTTTACTCTTGAGA  191

seq1  TCCTTCAGATAAATGGATAGGCATACCCATATTATTAGAAATGATATCCA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTTCAGATAAATGGATAGGCATACCCATA-TATTAGAAATGATATCCA  240

seq1  TTATTTAAAACCTACTGAGCATAAATGCTATTGCTTTTTTCCTCTGTATT  298
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAA--CTACTGAGCATAAATGCTATTGCTTTTTTCCTCTGTATT  288

seq1  TGTTTGCTTGCTGTTTTTTGTTATTGTTGTTATTTTGAGGAAGTGTCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGCTGTTTTTTGTTATTGTTGTTATTTTGAGGAAGTGTCTCT  338

seq1  CTACATAGTCCTGGCTTGATCTAGAACTCACAGAGATCTACTTCGCGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTCCTGGCTTGATCTAGAACTCACAGAGATCTACTTCGCGAGA  388

seq1  ATGCTAAGGTTACAACCAGGCCCTAAATGTAAATATTAATGCCATCTAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGGTTACAACCAGGCCCTAAATGTAAATATTAATGCCATCTAGA  438

seq1  AAGTAGTTCTACCACAACACCTAAACTGGTGTCGGAGTAGAGAGTCCTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTCTACCACAACACCTAAACTGGTGTCGGAGTAGAGAGTCCTAG  488

seq1  CAGTAATCTTGTCTCGTACACACATAACTAACAATTCATTCCTCATCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCTTGTCTCGTACACACATAACTAACAATTCATTCCTCATCAAG  538

seq1  TCAGAACTAGTACGTAGCTTCTTACCCCATGATAACAAAAAAAAGTACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTAGTACGTAGCTTCTTACCCCATGATAACAAAAAAAAGTACAT  588

seq1  TTCCAGCTAGAGGGGTGTAAGTACTCTGTATACAACCCCAAATAAAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTAGAGGGGTGTAAGTACTCTGTATACAACCCCAAATAAAGTAA  638

seq1  CTCTGCAAAAGAGTATGCAAACCTTTAACTATTTTCATATGTTCTCTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAAAAGAGTATGCAAACCTTTAACTATTTTCATATGTTCTCTGAT  688

seq1  ATCTTGTAATTTAAGTACTGAGAATAAATGAACCAATATTAATACCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTAATTTAAGTACTGAGAATAAATGAACCAATATTAATACCATTT  738

seq1  ATATTAGATAAGGAGACAAAAGAATTCTAATATACACATAAACATATCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATAAGGAGACAAAAGAATTCTAATATACACATAAACATATCCA  788

seq1  CATAAATATATTCATAAAATTAAGGAATATTAGGAACAACTATAATCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATATATTCATAAAATTAAGGAATATTAGGAACAACTATAATCTTT  838

seq1  GAAGCAATTATAGTCTCTGAAGCTGGTTAATTATCAGTACCCCTAGTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTATAGTCTCTGAAGCTGGTTAATTATCAGTACCCCTAGTCTG  888

seq1  GGATACTGAGTTGTATAAAACTAATAAAGTGGTCTGAGCACTTTCTTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGAGTTGTATAAAACTAATAAAGTGGTCTGAGCACTTTCTTCAT  938

seq1  TATTCTCAGCTTCCTGGGTATGAGCACAATGTGATTGTTTTCCTATAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAGCTTCCTGGGTATGAGCACAATGTGATTGTTTTCCTATAGCC  988

seq1  CTACTGCCATGGCCTCCCAACCGTGATAAACTTGATAACATCCTAGAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCCATGGCCTCCCAACCGTGATAAACTTGATAACATCCTAGAACT  1038

seq1  GTGAGCCAAAAATAAACTCTTTCTTCT  1075
      |||||||||||||||||||||||||||
seq2  GTGAGCCAAAAATAAACTCTTTCTTCT  1065