BAC Information

Click to search

BAC

Clone NameB6Ng01-082G11
Chromosome12 (Build37)
Map Location 18,870,120 - 19,051,541
singlet/doubletdoublet
Overlap geneLOC100042641, LOC668568, LOC668570
Upstream geneEG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558
Downstream geneEG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594, EG668600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082G11.bB6Ng01-082G11.g
ACCDH896967DH896968
length1,1311,041
definitionDH896967|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G11, 5' end.DH896968|Mus musculus domesticus DNA, BAC clone: B6Ng01-082G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,870,120 - 18,871,254)(19,050,496 - 19,051,541)
sequence
gcatggtgagcacagggttactgcccacagagggtaggagcagggtgctg
agcagtggaagctggggtggtgagtcctctctggggcttgatgggaagta
taagccatatgtgagcacctgtgaggtctctcgtgttgctcctcacttgc
tccatcaggggtgacctctaataacttgcctatcattgcccaaatcgttt
ggaccttagttaagctggcttgtgaaaacaagggtggtttctttgagtct
gtagcacaggtgtccaaacccctttgtcttttagtatacattaccaaaac
aagtaaaaatctaataggtctgatttcatacattatacttgtttttgttt
tcttaatttttttttctgttgcagttttttcatatttttttgcatcacat
gctaaatgagttgattattatttgagaaagggactttaataatttcagaa
tttttttgtggttttattgaaaaatgatagacctctgagctgatattctt
ctattccaatcgtttgtaattttcgccttcacatattttgcagaagtcac
agttgtttattgccatgaaacttttagaatccacattttttaaatgagat
attaattttttctcttcatcttgaatccctgagattctgtcttcctttcc
tgttctgtgggtgaaccttgcctctgtagttgtcagtgtacaggtaatct
catgtccttctcttagggacttagcaactgcttatgtcatttcctgcctc
catcccctgtgtctgttgtcaggcgttctttatatacatggaccaccagc
tatagcagctctctatttttgttccctgtctctgttctctgcacatgcac
actctctgtcatctctctcctcatggctctctttctcctccctgtctgtg
tgcctgtctgcaggtcgtcttgtgtacttctatcccttccccaggttctc
actcctctcccttccccaaacaacctcttttgcactttatctgttgcatg
ctttaatttctcagacctgctgtgatgcatactttgatttcttgttgcaa
ttgtcctgcctgtactctctatgttgctatgctggtgtggtagcactctg
ttggtgaatattgacctagaactggcctctg
gaattctgttgcggaggtaaagaaaatgatgtaagtgaggctttctcaag
ctgtggacagccgtggtctctggactcacacagcctcttccaagcctgct
tcaattttcaacccaaactgcttccttctcgcagtccctcttccccagga
tctggagagctctctgcttagtcactcaatacaatgactatgcaggccct
ttccagttaagagcacaggagctgatcatactgtcaacaggcaccacaca
ggtagcccagaattggccaacaaagaccttttgaacctcaaagagaccat
tctccacatccctctacagctctgctctttggcaagtagtgggcactgcc
aggcctcccaagatggcatgggcacccatgcctaagcagcctggggtccc
tggatctgctctacatgttggctcagaagccacagctgccccgtcgggct
acttccggaataagttggagaggtccgcgcagggagacccatcactccgg
ggccgcagagctcgcaggggtcgaagccgccacagactctgcagcagaag
ttgacctctccgaggatgggagcaaaggacctgaaaccctgcgagggaaa
tgggaacagacaggactgttccccaaaaaggcccaaggtggccaagcagc
atctccctagagcagggaacaaagggcttctgtgtcgggcactgctggtc
cggctgcgtccggctttgggggaccagaatcttttccctggtgtgggcgc
aggcggagggcactgggtatcgggcaccaggcgcggaagccttcccgggt
gcccagggtgcagcgcgatccccgcgactctagccttccctcccggtgcg
ggcgacgcttccgctcacctcctcgacggccgccacggtgttgcggcact
gggccgtgcgcgtgtggtgaagctaaaggccatgggcgcttgtagtcctc
aaggtctcggccacgaattccgacacaaaagatctggtccggcatcgcag
gcgcctgggcgcggactgcgcgcctcaacgccagggcgcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18870120_18871254
seq2: B6Ng01-082G11.b_62_1188

seq1  GGTGAGCACAGGGTTACTGCCCACAGAGGGTAGGAGCAGGGTGCTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCACAGGGTTACTGCCCACAGAGGGTAGGAGCAGGGTGCTGAGCA  50

seq1  GTGGAAGCTGGGGTGGTGAGTCCTCTCTGGGGCTTGATGGGAAGTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCTGGGGTGGTGAGTCCTCTCTGGGGCTTGATGGGAAGTATAAG  100

seq1  CCATATGTGAGCACCTGTGAGGTCTCTCGTGTTGCTCCTCACTTGCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTGAGCACCTGTGAGGTCTCTCGTGTTGCTCCTCACTTGCTCCA  150

seq1  TCAGGGGTGACCTCTAATAACTTGCCTATCATTGCCCAAATCGTTTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTGACCTCTAATAACTTGCCTATCATTGCCCAAATCGTTTGGAC  200

seq1  CTTAGTTAAGCTGGCTTGTGAAAACAAGGGTGGTTTCTTTGAGTCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAAGCTGGCTTGTGAAAACAAGGGTGGTTTCTTTGAGTCTGTAG  250

seq1  CACAGGTGTCCAAACCCCTTTGTCTTTTAGTATACATTACCAAAACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTCCAAACCCCTTTGTCTTTTAGTATACATTACCAAAACAAGT  300

seq1  AAAAATCTAATAGGTCTGATTTCATACATTATACTTGTTTTTGTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTAATAGGTCTGATTTCATACATTATACTTGTTTTTGTTTTCTT  350

seq1  AATTTTTTTTTCTGTTGCAGTTTTTTCATATTTTTTTGCATCACATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  AATTTTTTTTTCTGTTGCAGTTTTTTCATATTTTTTTGCATCACATGCTA  400

seq1  AATGAGTTGATTATTATTTGGGAAAGGGACTTTAATAATTTCAGAATTTT  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGAGTTGATTATTATTTGAGAAAGGGACTTTAATAATTTCAGAATTTT  450

seq1  TTTGTGGTTTTATTGAAAAATGATAGACCTCTGAGCTGATATTCTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTTTATTGAAAAATGATAGACCTCTGAGCTGATATTCTTCTAT  500

seq1  TCCAATCGTTTGTAATTTTCGCCTTCACATATTTTGCAGAAGTCACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCGTTTGTAATTTTCGCCTTCACATATTTTGCAGAAGTCACAGTT  550

seq1  GTTTATTGCCATGAAACTTTTAGAATCCACATTTTTTAAATGAGATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGCCATGAAACTTTTAGAATCCACATTTTTTAAATGAGATATTA  600

seq1  ATTTTTTCTCTTCATCTTGAATCCCTGAGATTCTCTCTTCCTTTCCTGTT  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTTTCTCTTCATCTTGAATCCCTGAGATTCTGTCTTCCTTTCCTGTT  650

seq1  CTGTGGGTGAACCTTGCCTCTGTAGTTGTCAGTGTACAGGTAATCTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGAACCTTGCCTCTGTAGTTGTCAGTGTACAGGTAATCTCATG  700

seq1  TCCTTCTCTTAGGGACTTAGCAACTGCTTATGTCATTTCCTGCCTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTAGGGACTTAGCAACTGCTTATGTCATTTCCTGCCTCCATC  750

seq1  CCCTGTGTCTGTTGTCAGGCGTGCTTTATATACATGGACCACCAGCTATA  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTGTGTCTGTTGTCAGGCGTTCTTTATATACATGGACCACCAGCTATA  800

seq1  GCAGCTCTCTATTTTTGTTCCCTGTCTCTGTTCTCTGCACATGCACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTCTATTTTTGTTCCCTGTCTCTGTTCTCTGCACATGCACACTC  850

seq1  TCTGTCATCTCTCTCCTCATGGCTCTCTTTCTCCTCC--GTCTGTGTGCC  898
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TCTGTCATCTCTCTCCTCATGGCTCTCTTTCTCCTCCCTGTCTGTGTGCC  900

seq1  TGTCTGCAGGTCGTCTTGTGTACTTCTATCCCTTCCCCAGGTTCTCACTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGGTCGTCTTGTGTACTTCTATCCCTTCCCCAGGTTCTCACTC  950

seq1  CTCTCCCTTCCCCCAAACAACCTCTTTTGCACTTTATCTGTTGCATGCTT  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTT-CCCCAAACAACCTCTTTTGCACTTTATCTGTTGCATGCTT  999

seq1  TAATTTCTCAGACCTGCTGTGATGGCATAGCTTTGATTTCTTGGTTGCAA  1048
      ||||||||||||||||||||||| ||||| |||||||||||| |||||||
seq2  TAATTTCTCAGACCTGCTGTGAT-GCATA-CTTTGATTTCTT-GTTGCAA  1046

seq1  TTGTTCCTGGCTGTTACTCTCTATGTTGCTATGCTGGTGT-GTAGCCATC  1097
      ||| ||||| ||| |||||||||||||||||||||||||| |||||   |
seq2  TTG-TCCTGCCTG-TACTCTCTATGTTGCTATGCTGGTGTGGTAGC--AC  1092

seq1  TCTGTTTGGGTGATTATTGACCTAGGTACTGGCCTCTG  1135
      ||||||  ||||| |||||||||| | |||||||||||
seq2  TCTGTT--GGTGAATATTGACCTA-GAACTGGCCTCTG  1127

seq1: chr12_19050496_19051541
seq2: B6Ng01-082G11.g_70_1110 (reverse)

seq1  CCGCGCCCTGGGCGACTGAGGCGGCCACAGTCCGCGCCCCGGCGCCCTGG  50
      ||||||||| ||||  |||||||  | |||||||||||| ||||||   |
seq2  CCGCGCCCT-GGCG-TTGAGGCG--CGCAGTCCGCGCCCAGGCGCC--TG  44

seq1  CGATGCCGGACCAGATC-TCTGTGTCGGAATTCGTGGCCGAGACCCTTGA  99
      ||||||||||||||||| | ||||||||||||||||||||||| ||||||
seq2  CGATGCCGGACCAGATCTTTTGTGTCGGAATTCGTGGCCGAGA-CCTTGA  93

seq1  GGACTACAAGGCGCCCACGGCCTCTAGCTTCACCACACGCGCACGGCCCA  149
      ||||||||| ||||||| ||||| ||||||||||||||||||||||||||
seq2  GGACTACAA-GCGCCCATGGCCTTTAGCTTCACCACACGCGCACGGCCCA  142

seq1  GTGCCGCAACACCGTGGCGGCCGTCGAGGAGGTGAGCGGTAGCGTCGCCC  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGCCGCAACACCGTGGCGGCCGTCGAGGAGGTGAGCGGAAGCGTCGCCC  192

seq1  GCACCGGGAGGG-AGGCTAGAGTCGCGGGGATCGCGCTGCACCCTGGGCA  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACCGGGAGGGAAGGCTAGAGTCGCGGGGATCGCGCTGCACCCTGGGCA  242

seq1  CCC-GGTAGGCTTCCGCGCCTGGTGCCCGATACCCAGTGCCCTCCGCCTG  297
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGAAGGCTTCCGCGCCTGGTGCCCGATACCCAGTGCCCTCCGCCTG  292

seq1  CGCCCACACCAGGGAAAAGATTCTGGTCCCCCAAAGCCGGACGCAGCCGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACACCAGGGAAAAGATTCTGGTCCCCCAAAGCCGGACGCAGCCGG  342

seq1  ACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTGCTCTAGGGAGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTGCTCTAGGGAGATG  392

seq1  CTGCTTGGCCACCTTGGGCCTTTTTGGGGAACAGTCCTGTCTGTTCCCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCCACCTTGGGCCTTTTTGGGGAACAGTCCTGTCTGTTCCCAT  442

seq1  TTCCCTCGCAGGGTTTCAGGTCCTTTGCTCCCATCCTCGGAGAGGTCAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCGCAGGGTTTCAGGTCCTTTGCTCCCATCCTCGGAGAGGTCAAC  492

seq1  TTCTGCTGCAGAGTCTGTGGCGGCTTCGACCCCTGCGAGCTCTGCGGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCAGAGTCTGTGGCGGCTTCGACCCCTGCGAGCTCTGCGGCCC  542

seq1  CGGAGTGATGGGTCTCCCTGCGCGGACCTCTCCAACTTATTCCGGAAGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTGATGGGTCTCCCTGCGCGGACCTCTCCAACTTATTCCGGAAGTA  592

seq1  GCCCGACGGGGCAGCTGTGGCTTCTGAGCCAACATGTAGAGCAGATCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGACGGGGCAGCTGTGGCTTCTGAGCCAACATGTAGAGCAGATCCAG  642

seq1  GGACCCCAGGCTGCTTAGGCATGGGTGCCCATGCCATCTTGGGAGGCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGGCTGCTTAGGCATGGGTGCCCATGCCATCTTGGGAGGCCTG  692

seq1  GCAGTGCCCACTACTTGCCAAAGAGCAGAGCTGTAGAGGGATGTGGAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCCACTACTTGCCAAAGAGCAGAGCTGTAGAGGGATGTGGAGAA  742

seq1  TGGTCTCTTTGAGGTTCAAAAGGTCTTTGTTGGCCAATTCTGGGCTACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTTTGAGGTTCAAAAGGTCTTTGTTGGCCAATTCTGGGCTACCT  792

seq1  GTGTGGTGCCTGTTGACAGTATGATCAGCTCCTGTGCTCTTAACTGGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGCCTGTTGACAGTATGATCAGCTCCTGTGCTCTTAACTGGAAA  842

seq1  GGGCCTGCATAGTCATTGTATTGAGTGACTAAGCAGAGAGCTCTCCAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCATAGTCATTGTATTGAGTGACTAAGCAGAGAGCTCTCCAGAT  892

seq1  CCTGGGGAAGAGGGACTGCGAGAAGGAAGCAGTTTGGGTTGAAAATTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAGAGGGACTGCGAGAAGGAAGCAGTTTGGGTTGAAAATTGAA  942

seq1  GCAGGCTTGGAAGAGGCTGTGTGAGTCCAGAGACCACGGCTGTCCACAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTGGAAGAGGCTGTGTGAGTCCAGAGACCACGGCTGTCCACAGC  992

seq1  TTGGGAAAGCCTCACTTACATCATTTTCTTTACCTCCGCAACAGAATTC  1046
      ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGCCTCACTTACATCATTTTCTTTACCTCCGCAACAGAATTC  1041