BAC Information

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BAC

Clone NameB6Ng01-082J09
Chromosome12 (Build37)
Map Location 12,181,616 - 12,408,502
singlet/doubletdoublet
Overlap geneD12Ertd553e
Upstream geneMsgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J09.bB6Ng01-082J09.g
ACCDH897098DH897099
length1,142797
definitionDH897098|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J09, 5' end.DH897099|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,181,616 - 12,182,774)(12,407,706 - 12,408,502)
sequence
gaattccagaatagtcaaggctacacagagaagccctatctcaaaaaagc
aagcaagcaaacaaacaaaaaacccaagctgttttgtctagtgtatattg
ccaaagggaataattaaataaattaactttattcaataattcagaattcc
atcaacctatgccaccttcagttttcttcttcagtctgactaaatgtgtt
ccctccaaagtctccctatgcaactaccaaagcatgcaactgccaccata
gacgctaggatggatctcattggagctagcctgggaacatacccagaaag
gacatctcctccttaacgagaggtgacatagtgcctgccattgttgtgac
aacgttttatacttattacttaattatttaaaaagctatgcaatgtgcat
ttctagtctcaccttacacaccaagaagcggtggcatagggacacattgc
ctctggcagaatgttctagatttgggtccattgtctctgtctctctgaat
gtggagcttactatgctgggtagtcaaaagacatagccacagctggtgtg
tcatggatagccccaatgatagagacacagagatgttaacaccagggctc
agagaagtgactccaacttggtagggtggtgaaggactttctggaggaga
cgagctggtgtgaaagtggagactggcagtgccatagcctgggattcacg
tgagttataaatcagattgtgcctctggcctggcttccttgctcttgccc
tggtgtgctcttcctggccactagtctatcacctcttgagtcttctccac
gatgggacctgccaatctcaccccagacctacagcctctacacacctctc
ctctaccttccctgaatgttctccctgctttagtgcaatcctccttgacc
atgctcatgggcctcacttaaacttgtcctctaccaaattgccctactta
tttcttcaaataaacaatagtgctcaattgtcttcgactgtgcctctctg
tctcctctgatattacttttcattagactgtcaagcccttgtgaggttgt
ttctatgcatgtgtcacagttcaaatctaacgtctactttggaacagctc
agagagctttgatgtgtcctctgatattgtgaagactctgta
gaattccatcagaatgaggtcatggtttggctacagtaaaattaaaaata
acccagagcgtccccccacccccacccggctgcccaacctggcatcaacc
cagggcggtgcatttgggaaccattatcgggtttatcggggtaacgtatc
gcagaaaacctgcttctgtttatagaccattttattattccgttttgaca
tttcccttttttcttcaacccctttcccccctaagcaaatatctattaga
ctgagttgaaatacgatccaagcaaatgtactctttttcaacttcgggct
aaagcaggtctgactagaagcagaaatgcttaagtgaaaagttatgattt
acttgctttctaaaaggaaacagtgtcagaaggagaattttatgtgacaa
gggaacttgtgcacgggctggcagctgactgaattgtcctgggaaaaata
ttactgcctaggaggctggtcttggcctcgagcgccccctatggtaagta
gaaacactgcaccggaaaaaccggatggcgcagaaggtaagattgggtag
agtgtagagatttgtgtctactctcaccccttatactatgctgttaggta
aaccgagggccagtggtttgtctctcaaggcaacttgtacaatagcatag
agtaaactagggtgcacagtggcgcgtggaagacggaggcgtggggaaca
acctgaccacgtgattctaagagattttatcttatgctgctttgagcata
gactctaaaaatggtggctcacgcctttatcccagaattttgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_12181616_12182774
seq2: B6Ng01-082J09.b_48_1189

seq1  GAATTCCAGAATAGTCAAGGCTACACAGAGAAGCCCTATCTCAAAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATAGTCAAGGCTACACAGAGAAGCCCTATCTCAAAAAAGC  50

seq1  AAGCAAGCAAACAAACAAAAAACCCAAGCTGTTTTGTCTAGTGTATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAAACAAACAAAAAACCCAAGCTGTTTTGTCTAGTGTATATTG  100

seq1  CCAAAGGGAATAATTAAATAAATTAACTTTATTCAATAATTCAGAATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGAATAATTAAATAAATTAACTTTATTCAATAATTCAGAATTCC  150

seq1  ATCAACCTATGCCACCTTCAGTTTTCTTCTTCAGTCTGACTAAATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCTATGCCACCTTCAGTTTTCTTCTTCAGTCTGACTAAATGTGTT  200

seq1  CCCTCCAAAGTCTCCCTATGCAACTACCAAAGCATGCAACTGCCACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAGTCTCCCTATGCAACTACCAAAGCATGCAACTGCCACCATA  250

seq1  GACGCTAGGATGGATCTCATTGGAGCTAGCCTGGGAACATACCCAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAGGATGGATCTCATTGGAGCTAGCCTGGGAACATACCCAGAAAG  300

seq1  GACATCTCCTCCTTAACGAGAGGTGACATAGTGCCTGCCATTGTTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTCCTCCTTAACGAGAGGTGACATAGTGCCTGCCATTGTTGTGAC  350

seq1  AACGTTTTATACTTATTACTTAATTATTTAAAAAGCTATGCAATGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTATACTTATTACTTAATTATTTAAAAAGCTATGCAATGTGCAT  400

seq1  TTCTAGTCTCACCTTACACACCAAGAAGCGGTGGCATAGGGACACATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTCACCTTACACACCAAGAAGCGGTGGCATAGGGACACATTGC  450

seq1  CTCTGGCAGAATGTTCTAGATTTGGGTCCATTGTCTCTGTCTCTCTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGAATGTTCTAGATTTGGGTCCATTGTCTCTGTCTCTCTGAAT  500

seq1  GTGGAGCTTACTATGCTGGGTAGTCAAAAGACATAGCCACAGCTGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTTACTATGCTGGGTAGTCAAAAGACATAGCCACAGCTGGTGTG  550

seq1  TCATGGATAGCCCCAATGATAGAGACACAGAGATGTTAACACCAGGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATAGCCCCAATGATAGAGACACAGAGATGTTAACACCAGGGCTC  600

seq1  AGAGAAGTGACTCCAACTTGGTAGGGTGGTGAAGGACTTTCTGGAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTGACTCCAACTTGGTAGGGTGGTGAAGGACTTTCTGGAGGAGA  650

seq1  CGAGCTGGTGTGAAAGTGGAGACTGGCAGTGCCATAGCCTGGGATTCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGGTGTGAAAGTGGAGACTGGCAGTGCCATAGCCTGGGATTCACG  700

seq1  TGAGTTATAAATCAGATTGTGCCTCTGGCCTGGCTTCCTTGCTCTTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATAAATCAGATTGTGCCTCTGGCCTGGCTTCCTTGCTCTTGCCC  750

seq1  TGGTGTGCTCTTCCTGGCCACTAGTCTATCACCTCTTGAGTCTTCTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCTCTTCCTGGCCACTAGTCTATCACCTCTTGAGTCTTCTCCAC  800

seq1  GATGGGACCTGCCAATCTCACCCCAGACCTACAGCCTCTACACACCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACCTGCCAATCTCACCCCAGACCTACAGCCTCTACACACCTCTC  850

seq1  CTCTACCTTCCCTGAATGTTCTCCCTGCTTTAGTGCAATCCTCCTTGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTTCCCTGAATGTTCTCCCTGCTTTAGTGCAATCCTCCTTGACC  900

seq1  ATGCTCATGGGCCTCACTTAAACTTGTCCTCTACCAAATTGCCCTACTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATGGGCCTCACTTAAACTTGTCCTCTACCAAATTGCCCTACTTA  950

seq1  TTTTCTTCAAAATACACAATAGTGCCTCAATTGTCCTTCGACCTGTGCCT  1000
       ||||||| ||||| ||||||||| ||||||||| |||||| ||||||||
seq2  -TTTCTTC-AAATAAACAATAGTG-CTCAATTGT-CTTCGA-CTGTGCCT  995

seq1  CTCTGTCT-CTCTGACTATTACTTTTCATTAGACTGTCAAGCCC-TGTGA  1048
      |||||||| |||||| |||||||||||||||||||||||||||| |||||
seq2  CTCTGTCTCCTCTGA-TATTACTTTTCATTAGACTGTCAAGCCCTTGTGA  1044

seq1  GGTTGTTTCTATGCAATGTGTTCACAGTTCAAATTCTACCGTCTAACTTT  1098
      |||||||||||||| ||||| |||||||||||| |||| ||||||   ||
seq2  GGTTGTTTCTATGC-ATGTG-TCACAGTTCAAA-TCTAACGTCTA--CTT  1089

seq1  TGGACCAGCTCCAGGAGAGCTTTGGATGTGTCCTCTGATTATTTGTAGAA  1148
      |||| ||||||   ||||||||| |||||||||||||||   |||| |||
seq2  TGGAACAGCTC--AGAGAGCTTT-GATGTGTCCTCTGAT--ATTGT-GAA  1133

seq1  GACTTCCTGTA  1159
      ||||  |||||
seq2  GACT--CTGTA  1142

seq1: chr12_12407706_12408502
seq2: B6Ng01-082J09.g_70_866 (reverse)

seq1  CCTCCC-AAATTCTGGGATTAAAGGCGTGAGCCACCATTTTTAGAGTCTA  49
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCCCAAAATTCTGGGA-TAAAGGCGTGAGCCACCATTTTTAGAGTCTA  49

seq1  TGCTCAAAGCAGCATAAGATAAAAATCTCTTAGAATCACGTGGTCAGGTT  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCTCAAAGCAGCATAAGAT-AAAATCTCTTAGAATCACGTGGTCAGGTT  98

seq1  GTTCCCCACGCCTCCGTCTTCCACGCGCCACTGTGCACCCTAGTTTACTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCACGCCTCCGTCTTCCACGCGCCACTGTGCACCCTAGTTTACTC  148

seq1  TATGCTATTGTACAAGTTGCCTTGAGAGACAAACCACTGGCCCTCGGTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATTGTACAAGTTGCCTTGAGAGACAAACCACTGGCCCTCGGTTT  198

seq1  ACCTAACAGCATAGTATAAGGGGTGAGAGTAGACAC-AATCTCTACACTC  248
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTAACAGCATAGTATAAGGGGTGAGAGTAGACACAAATCTCTACACTC  248

seq1  TACCCAATCTTACCTTCTGCGCCATCCGGTTTTTCCGGTGCAGTGTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATCTTACCTTCTGCGCCATCCGGTTTTTCCGGTGCAGTGTTTCT  298

seq1  ACTTACCATAGGGGGCGCTCGAGGCCAAGACCAGCCTCCTAGGCAGTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCATAGGGGGCGCTCGAGGCCAAGACCAGCCTCCTAGGCAGTAAT  348

seq1  ATTTTTCCCAGGACAATTCAGTCAGCTGCCAGCCCGTGCACAAGTTCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCAGGACAATTCAGTCAGCTGCCAGCCCGTGCACAAGTTCCCT  398

seq1  TGTCACATAAAATTCTCCTTCTGACACTGTTTCCTTTTAGAAAGCAAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATAAAATTCTCCTTCTGACACTGTTTCCTTTTAGAAAGCAAGTA  448

seq1  AATCATAACTTTTCACTTAAGCATTTCTGCTTCTAGTCAGACCTGCTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAACTTTTCACTTAAGCATTTCTGCTTCTAGTCAGACCTGCTTTA  498

seq1  GCCCGAAGTTGAAAAAGAGTACATTTGCTTGGATCGTATTTCAACTCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAAGTTGAAAAAGAGTACATTTGCTTGGATCGTATTTCAACTCAGT  548

seq1  CTAATAGATATTTGCTTAGGGGGGAAAGGGGTTGAAGAAAAAAGGGAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGATATTTGCTTAGGGGGGAAAGGGGTTGAAGAAAAAAGGGAAAT  598

seq1  GTCAAAACGGAATAATAAAATGGTCTATAAACAGAAGCAGGTTTTCTGCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACGGAATAATAAAATGGTCTATAAACAGAAGCAGGTTTTCTGCG  648

seq1  ATACGTTACCCCGATAAACCCGATAATGGTTCCCAAATGCACCGCCCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTACCCCGATAAACCCGATAATGGTTCCCAAATGCACCGCCCTGG  698

seq1  GTTGATGCCAGGTTGGGCAGCCGGGTGGGGGTGGGGGGACGCTCTGGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGCCAGGTTGGGCAGCCGGGTGGGGGTGGGGGGACGCTCTGGGTT  748

seq1  ATTTTTAATTTTACTGTAGCCAAACCATGACCTCATTCTGATGGAATTC  797
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTTTACTGTAGCCAAACCATGACCTCATTCTGATGGAATTC  797