BAC Information

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BAC

Clone NameB6Ng01-082J18
Chromosome12 (Build37)
Map Location 33,981,535 - 34,086,844
singlet/doubletdoublet
Overlap geneAtxn7l1, 4930504H06Rik
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream geneTwistnb, LOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J18.bB6Ng01-082J18.g
ACCDH897116DH897117
length6431,090
definitionDH897116|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J18, 5' end.DH897117|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,981,535 - 33,982,177)(34,085,742 - 34,086,844)
sequence
gaattcctatgcccttcagggcctgcaatccatccccctattcttccata
ggagtccccaaactccatccactctttggctatgggtgtcggtatctgac
tgagtcagctgctggatggagcctctcagagggcagcctgtctccaagta
taacagagtatcattaatagtgtaagggattggtgtgagccacaacttaa
aaaacaaacaaacaaacaaacaaacaaacaaccctattttgaggtgctgg
agagatggctttgcagataaaagcacttgacattcttgcagaggactaga
attttgttcccagctcccatatccaggagctgaaaacctcttctgtcttc
cccagggactcatgtgcacatactaacacacacacacacacacacacaca
cacacacacacacacaaagagtaaaaattcctgcagacagtagtggcaca
tgcctttaattccagcactccgaaggcagaggcagatagatctctgagtt
tagggcctagactatagaacaagttgtaggacagctagggctacacagag
aaatcctgtctcagtaaaaccaataaacaaacaaacaaacaaacaaacaa
acaaactggataggtaggtaggtaggtaggtaggtaggtagat
gaattcacagggtagaccaggctgaccttgaactcacagagatcctcctg
cctcagtttcctgagtgtggggctccatcatccccaacctatttatggtt
ctgttttgtctcgctattttgccttttctgctatattcatttttattcct
tttcttttttccccttttcttaattatacctaaaagcagacctgcattta
gtgttggtgtcggtttcctgaggaaaaccctggcgacataatgaaacaca
gtcctgtgtcgatgactaacgaatcgtctatcaagcccacacacctcggg
tcctctcagcctacttaaaaaacaaaatagtaaatgcacagatagtcaag
atggctgttggactctccaaaggtcattatcatccggtggatggtgcagg
agaggctctccttttctttcttgtcttcctaaacagtgtagaagaagcct
gcatctctcgggcctgcatcagttctgcactgatcctgaaagacgcacag
cttctgagcgcatccctgccactgcagccttaagtgaagctggaatttac
aaactggctcagccaaggctgagattctgctgaatttcaaggcaagctgg
cctaaccatgggaaataatgtgtctttgagaaaactgttgtctaacaaag
gcgacagttggatggaagttgtctgataaaatgttgaatgaatgaaacca
gacacatggaaacgtggtaggaccatttattatcttgagctacaatgcca
ctaaaacattgaccacattttttccatcctcttgttcctaaggaaacaaa
gaacagaaaatttagctgtgagaagcaaagtaatttgcattacaaataga
aatgcagacatctgaaggcagtgtggggagcaaaggtaggctatgtctga
cctccactgtgctaagcaggggagctattgtagaactacttatgaatgtg
tgttggtcatgaggttcctaatatctgctttgggatgcactgttatataa
cgacccactgtgatctgggagtgtagaagacatcatattccagcactctg
agctgaagcagagatcactgaagtcaaactggcctgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33981535_33982177
seq2: B6Ng01-082J18.b_48_690

seq1  GAATTCCTATGCCCTTCAGGGCCTGCAATCCATCCCCCTATTCTTCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGCCCTTCAGGGCCTGCAATCCATCCCCCTATTCTTCCATA  50

seq1  GGAGTCCCCAAACTCCATCCACTCTTTGGCTATGGGTGTCGGTATCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCAAACTCCATCCACTCTTTGGCTATGGGTGTCGGTATCTGAC  100

seq1  TGAGTCAGCTGCTGGATGGAGCCTCTCAGAGGGCAGCCTGTCTCCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGCTGCTGGATGGAGCCTCTCAGAGGGCAGCCTGTCTCCAAGTA  150

seq1  TAACAGAGTATCATTAATAGTGTAAGGGATTGGTGTGAGCCACAACTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGTATCATTAATAGTGTAAGGGATTGGTGTGAGCCACAACTTAA  200

seq1  AAAACAAACAAACAAACAAACAAACAAACAACCCTATTTTGAGGTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAAACAAACAACCCTATTTTGAGGTGCTGG  250

seq1  AGAGATGGCTTTGCAGATAAAAGCACTTGACATTCTTGCAGAGGACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTTTGCAGATAAAAGCACTTGACATTCTTGCAGAGGACTAGA  300

seq1  ATTTTGTTCCCAGCTCCCATATCCAGGAGCTGAAAACCTCTTCTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCCCAGCTCCCATATCCAGGAGCTGAAAACCTCTTCTGTCTTC  350

seq1  CCCAGGGACTCATGTGCACATACTAACACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGACTCATGTGCACATACTAACACACACACACACACACACACACA  400

seq1  CACACACACACACACAAAGAGTAAAAATTCCTGCAGACAGTAGTGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAAGAGTAAAAATTCCTGCAGACAGTAGTGGCACA  450

seq1  TGCCTTTAATTCCAGCACTCCGAAGGCAGAGGCAGATAGATCTCTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATTCCAGCACTCCGAAGGCAGAGGCAGATAGATCTCTGAGTT  500

seq1  TAGGGCCTAGACTATAGAACAAGTTGTAGGACAGCTAGGGCTACACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCTAGACTATAGAACAAGTTGTAGGACAGCTAGGGCTACACAGAG  550

seq1  AAATCCTGTCTCAGTAAAACCAATAAACAAACAAACAAACAAACAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGTCTCAGTAAAACCAATAAACAAACAAACAAACAAACAAACAA  600

seq1  ACAAACTGGATAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGAT  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGGATAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGAT  643

seq1: chr12_34085742_34086844
seq2: B6Ng01-082J18.g_69_1158 (reverse)

seq1  TGCTCAGGCAAGTTTTGAACCTTCAGTGATCCTCCTGCCTCAGCCTTCAG  50
      ||||||||| || |||||  |||||||||||   |||| |||||  ||||
seq2  TGCTCAGGCCAG-TTTGA--CTTCAGTGATC--TCTGCTTCAGC--TCAG  43

seq1  AGTGCTGGGATTATTGATGTCTTCTACCACTCCCAGATCACAGTGGGTTT  100
      |||||||| ||   |||||||||||| ||||||||||||||||||||  |
seq2  AGTGCTGGAAT--ATGATGTCTTCTA-CACTCCCAGATCACAGTGGG--T  88

seq1  CCTTATATAAACAGTGCATTCCCAAAGCAGATA-TAGGAACCTCAATGAC  149
      | |||||| ||||||||| |||||||||||||| |||||||||| |||||
seq2  CGTTATAT-AACAGTGCA-TCCCAAAGCAGATATTAGGAACCTC-ATGAC  135

seq1  CAACACACATTCATAAGTAGTTCTACAATAGCTCCCCTTGCTTAGCACAG  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAACACACATTCATAAGTAGTTCTACAATAGCTCCCC-TGCTTAGCACAG  184

seq1  TGGAGGTCAGACATAGCCTACCTTTGCT-CCCACACTGCCTTCAGATGTC  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGAGGTCAGACATAGCCTACCTTTGCTCCCCACACTGCCTTCAGATGTC  234

seq1  TGCATTTCTATTTGTAATGC-AATTACTTTGCTTCTCACAGCTAAATTTT  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCATTTCTATTTGTAATGCAAATTACTTTGCTTCTCACAGCTAAATTTT  284

seq1  CTGTTCTTTGTTTCCTTAGGAACAAGAGGATGGAAAAAATGTGGTCAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTTGTTTCCTTAGGAACAAGAGGATGGAAAAAATGTGGTCAATG  334

seq1  TTTTAGTGGCATTGTAGCTCAAGATAATAAATGGTCCTACCACGTTTCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGGCATTGTAGCTCAAGATAATAAATGGTCCTACCACGTTTCCA  384

seq1  TGTGTCTGGTTTCATTCATTCAACATTTTATCAGACAACTTCCATCCAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGGTTTCATTCATTCAACATTTTATCAGACAACTTCCATCCAAC  434

seq1  TGTCGCCTTTGTTAGACAACAGTTTTCTCAAAGACACATTATTTCCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCTTTGTTAGACAACAGTTTTCTCAAAGACACATTATTTCCCATG  484

seq1  GTTAGGCCAGCTTGCCTTGAAATTCAGCAGAATCTCAGCCTTGGCTGAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCAGCTTGCCTTGAAATTCAGCAGAATCTCAGCCTTGGCTGAGC  534

seq1  CAGTTTGTAAATTCCAGCTTCACTTAAGGCTGCAGTGGCAGGGATGCGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTAAATTCCAGCTTCACTTAAGGCTGCAGTGGCAGGGATGCGCT  584

seq1  CAGAAGCTGTGCGTCTTTCAGGATCAGTGCAGAACTGATGCAGGCCCGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGTGCGTCTTTCAGGATCAGTGCAGAACTGATGCAGGCCCGAG  634

seq1  AGATGCAGGCTTCTTCTACACTGTTTAGGAAGACAAGAAAGAAAAGGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGGCTTCTTCTACACTGTTTAGGAAGACAAGAAAGAAAAGGAGA  684

seq1  GCCTCTCCTGCACCATCCACCGGATGATAATGACCTTTGGAGAGTCCAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCCTGCACCATCCACCGGATGATAATGACCTTTGGAGAGTCCAAC  734

seq1  AGCCATCTTGACTATCTGTGCATTTACTATTTTGTTTTTTAAGTAGGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTGACTATCTGTGCATTTACTATTTTGTTTTTTAAGTAGGCTG  784

seq1  AGAGGACCCGAGGTGTGTGGGCTTGATAGACGATTCGTTAGTCATCGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCGAGGTGTGTGGGCTTGATAGACGATTCGTTAGTCATCGACA  834

seq1  CAGGACTGTGTTTCATTATGTCGCCAGGGTTTTCCTCAGGAAACCGACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGTGTTTCATTATGTCGCCAGGGTTTTCCTCAGGAAACCGACAC  884

seq1  CAACACTAAATGCAGGTCTGCTTTTAGGTATAATTAAGAAAAGGGGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAAATGCAGGTCTGCTTTTAGGTATAATTAAGAAAAGGGGAAAA  934

seq1  AAGAAAAGGAATAAAAATGAATATAGCAGAAAAGGCAAAATAGCGAGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAATAAAAATGAATATAGCAGAAAAGGCAAAATAGCGAGACA  984

seq1  AAACAGAACCATAAATAGGTTGGGGATGATGGAGCCCCACACTCAGGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACCATAAATAGGTTGGGGATGATGGAGCCCCACACTCAGGAAA  1034

seq1  CTGAGGCAGGAGGATCTCTGTGAGTTCAAGGTCAGCCTGGTCTACCCTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGGAGGATCTCTGTGAGTTCAAGGTCAGCCTGGTCTACCCTGT  1084

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1090