BAC Information

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BAC

Clone NameB6Ng01-083B23
Chromosome12 (Build37)
Map Location 60,261,496 - 60,417,317
singlet/doubletdoublet
Overlap geneMgea6, Fbxo33, LOC665628
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2
Downstream geneLOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083B23.bB6Ng01-083B23.g
ACCDH897474DH897475
length1,1161,061
definitionDH897474|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B23, 5' end.DH897475|Mus musculus domesticus DNA, BAC clone: B6Ng01-083B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,261,496 - 60,262,611)(60,416,247 - 60,417,317)
sequence
gaattctacttctgaattgtcaggcagcggaagagactgagactgggact
ggcttgagcatttgaaaccccaaagcccaccctcagtgacacacttactc
taacaaggccacagctcctaaaagtgccactctctatgggcttgagggcc
tgtggaaccattttcattcaaaccaccacatgtgtcatatgtttggtata
gttttagttgttaaaaagtatcaacttgattccaggacagcgaggaacct
gtgttgaatgctcttccaatattaattaaacattataaagccctaacagg
tctgactgctctgtgtgagacagaatatgctgagaactaagagaaaagct
ctgggcagctggagcaatggctgactaaatgctgggctatttcttccttg
tttccactgagcaggagttttcatttgtttctggaaaagcagagctctgt
aagcataaagacttgcactaattggtttttgttgcatacgaacatttcct
tctagtcatctctccccctagtctctgcctcactgaaataatttacaaca
gtctttcttttggagttgttgtttttatgtaaccccaggctgtcttggag
tcctgacgctgctctctgaacttcccatatgatagggtatatataggctc
atgagtaccatgcttagcctgtacagtaccctcataaaagacaatatgag
ggatggagagacagctcaaagggtaaagtcctctctgctgagcctgacga
cctgaggtcagttcccagtggaaggagagaactgacccctgacccttgct
agttgacttctgacctttgactccttgaccatgtaggcatgtccctctac
ccctcaccactgcactaagtttaaaaattctttaagaaaaataaagtatg
agacaatgaactacaggagataaagtaaagaattagtgcttttgggttag
atttctttggtattgtgatgactcacttaatagagagagaatatacagca
tggatattctttaccgaagctgactggttgcccgatcgcctgaaccacat
agatggacaattgtttttttctgggatagatgttccctgtatgtacaatt
tactatccggtgtatt
gaattcaataaaaatactttcttgagggacactgtcccaatcacaaaacc
taaaatctacagtttgtcctgcctgcagagtatgctaggactggaaccta
gcagaatcatcatcaaagaagacaaggagacatctgtcttccagcaattg
actaaagcagattcagaaccccatagccaaacattaggtggagttctgga
gtcctcaaaaggaaggaacagaggaaccagaggggtcagggacataccag
gagaactcggcccacagaatcaactgatcaggactcatgggaacgtgcag
aggtcaggaagactgtagggatctgttctaggccctctgttatggctgag
gagctccatgctcttatggaaatcctaacagtgggctcagagcctctccc
tgactctttcgcctacttgagggatccttttccttctactgggttttcct
ccttgtctattcctcatgtggtactatgtgtctggtcttattgtagctta
taacgccttgtttggttgatgtccctgggataggagctggatctcaggta
gaggggaggtatgcaaacagggccggggacaacagtagatgtaatatatg
atataagaataaaaacaaaaatagaatgccctcttgaagacttcagcaat
agaatggaccgaggatggaagagagtattgagcctggtaagaagttacag
caaaacttttcagatacatgagacactatgacaagaacaaaactgtttag
atatatgaaatactatgaaaagaacaatctataggtcatgggtaaaaaga
aagggtgtaactctaatggcatagaatatatttttaacataaccatagca
gaaatgtaccaagaattatgacagaaaatgccaattcatatataggatgt
gtttgatcatcacacataggagactacaaagaagttcccattgttgacta
tactagtcactaaatgtacagatcacaatgatggtaaagatctgaagcag
ccacgagatgcctaatcactataaagtagaccaatagaatttggatacta
gatttctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60261496_60262611
seq2: B6Ng01-083B23.b_39_1154

seq1  GAATTCTACTTCTGAATTGTCAGGCAGCGGAAGAGACTGAGACTGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTCTGAATTGTCAGGCAGCGGAAGAGACTGAGACTGGGACT  50

seq1  GGCTTGAGCATTTGAAACCCCAAAGCCCACCCTCAGTGACACACTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGCATTTGAAACCCCAAAGCCCACCCTCAGTGACACACTTACTC  100

seq1  TAACAAGGCCACAGCTCCTAAAAGTGCCACTCTCTATGGGCTTGAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGCCACAGCTCCTAAAAGTGCCACTCTCTATGGGCTTGAGGGCC  150

seq1  TGTGGAACCATTTTCATTCAAACCACCACATGTGTCATATGTTTGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACCATTTTCATTCAAACCACCACATGTGTCATATGTTTGGTATA  200

seq1  GTTTTAGTTGTTAAAAAGTATCAACTTGATTCCAGGACAGCGAGGAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTTGTTAAAAAGTATCAACTTGATTCCAGGACAGCGAGGAACCT  250

seq1  GTGTTGAATGCTCTTCCAATATTAATTAAACATTATAAAGCCCTAACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAATGCTCTTCCAATATTAATTAAACATTATAAAGCCCTAACAGG  300

seq1  TCTGACTGCTCTGTGTGAGACAGAATATGCTGAGAACTAAGAGAAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGCTCTGTGTGAGACAGAATATGCTGAGAACTAAGAGAAAAGCT  350

seq1  CTGGGCAGCTGGAGCAATGGCTGACTAAATGCTGGGCTATTTCTTCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCTGGAGCAATGGCTGACTAAATGCTGGGCTATTTCTTCCTTG  400

seq1  TTTCCACTGAGCAGGAGTTTTCATTTGTTTCTGGAAAAGCAGAGCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTGAGCAGGAGTTTTCATTTGTTTCTGGAAAAGCAGAGCTCTGT  450

seq1  AAGCATAAAGACTTGCACTAATTGGTTTTTGTTGCATACGAACATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAAGACTTGCACTAATTGGTTTTTGTTGCATACGAACATTTCCT  500

seq1  TCTAGTCATCTCTCCCCCTAGTCTCTGCCTCACTGAAATAATTTACAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCATCTCTCCCCCTAGTCTCTGCCTCACTGAAATAATTTACAACA  550

seq1  GTCTTTCTTTTGGAGTTGTTGTTTTTATGTAACCCCAGGCTGTCTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTTTTGGAGTTGTTGTTTTTATGTAACCCCAGGCTGTCTTGGAG  600

seq1  TCCTGACGCTGCTCTCTGAACTTCCCATATGATAGGGTATATATAGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACGCTGCTCTCTGAACTTCCCATATGATAGGGTATATATAGGCTC  650

seq1  ATGAGTACCATGCTTAGCCTGTACAGTACCCTCATAAAAGAAAATATGAG  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGAGTACCATGCTTAGCCTGTACAGTACCCTCATAAAAGACAATATGAG  700

seq1  GGATGGGGAGACAGCTCAAAGGGTAAAGTCCTCTCTGCTGAGCCTGACGA  750
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGAGACAGCTCAAAGGGTAAAGTCCTCTCTGCTGAGCCTGACGA  750

seq1  CCTGAGGTCAGTTCCCAGTGGAAGGAGAGAACTGACCCCTGACCCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTCAGTTCCCAGTGGAAGGAGAGAACTGACCCCTGACCCTTGCT  800

seq1  AGTTGACTTCTGACCTTTGACTCCTTGACCATGTAGGCATGTCCCTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTTCTGACCTTTGACTCCTTGACCATGTAGGCATGTCCCTCTAC  850

seq1  CCCTCACCACTGCACTAAGTTTAAAAAATTTTTTAAGAAAAATAAAGTAT  900
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CCCTCACCACTGCACTAAGTTT-AAAAATTCTTTAAGAAAAATAAAGTAT  899

seq1  GAGACAAATGAACTACAGTAGATAAAAGTAAAAGAATTTGTGTTTTTGGG  950
      ||||| |||||||||||| |||| ||||| |||||||| ||| |||||||
seq2  GAGAC-AATGAACTACAGGAGAT-AAAGT-AAAGAATTAGTGCTTTTGGG  946

seq1  TAAGATTTCTTTGGTATTGTG-TGACTCA-TTTATAGAAGAGAGAATATA  998
      | ||||||||||||||||||| ||||||| || |||| ||||||||||||
seq2  TTAGATTTCTTTGGTATTGTGATGACTCACTTAATAG-AGAGAGAATATA  995

seq1  CAACATGGAT-TTCTTT-CCTAAG-TGACTGTTTTTCGAATTGGCTG-AC  1044
      || ||||||| |||||| || ||| |||||| ||  |  || | ||| ||
seq2  CAGCATGGATATTCTTTACCGAAGCTGACTGGTTGCCCGATCGCCTGAAC  1045

seq1  AGCATAGATGGACATATGTTTTTTTCTGGTATAGATGTTTCCTGTACATG  1094
        ||||||||||||  ||||||||||||| ||||||||| |||||  |||
seq2  CACATAGATGGACAATTGTTTTTTTCTGGGATAGATGTTCCCTGT--ATG  1093

seq1  TACCATTTACTAT-CTGTGTATT  1116
      ||| ||||||||| | |||||||
seq2  TACAATTTACTATCCGGTGTATT  1116

seq1: chr12_60416247_60417317
seq2: B6Ng01-083B23.g_67_1127 (reverse)

seq1  GGAGAGAAATCTAGTAATCTAATTCTTATTGTTCTACCTTTATATGTGAT  50
      ||||||||||||||||  | ||||| ||||| |||| ||||||| |||||
seq2  GGAGAGAAATCTAGTATCCAAATTC-TATTGGTCTA-CTTTATA-GTGAT  47

seq1  TTGGCATTCCTCTGTGGCTGCTTTCAAATCTTT-CCCTCCTTTTGATCTG  99
      | |||||  ||| |||||||| |||| |||||| || || || |||||||
seq2  TAGGCAT--CTC-GTGGCTGC-TTCAGATCTTTACCATCATTGTGATCTG  93

seq1  TACACTTAGTGACTTAGTATAGTTCAACAATGGGAACTTCTTTTGTAGTC  149
      |||| |||||||| |||||||| ||||||||||||||||| |||||||||
seq2  TACATTTAGTGAC-TAGTATAG-TCAACAATGGGAACTTC-TTTGTAGTC  140

seq1  TCCTATGTGTGATGTTCAAAACACCTCCTATATATGAATTGGCATTTTCT  199
      |||||||||||||| || |||||| |||||||||||||||||||||||||
seq2  TCCTATGTGTGATGATC-AAACACATCCTATATATGAATTGGCATTTTCT  189

seq1  TTCATAATTCTTGGTAAATTTCTGCTATGGTTATGTTAAAAATATATTCT  249
       ||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCATAATTCTTGGTACATTTCTGCTATGGTTATGTTAAAAATATATTCT  239

seq1  ATGCCATTAGAGTTACACCCTTTCTTTTTACCCATGACCTATAGATTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTAGAGTTACACCCTTTCTTTTTACCCATGACCTATAGATTGTT  289

seq1  CTTTTCATAGTATTTCATATATCTAAAAAGTTTTGTTCTTGTCATAGTGT  349
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTTCATAGTATTTCATATATCTAAACAGTTTTGTTCTTGTCATAGTGT  339

seq1  CTCATGTATCTGAAAAGTTTTGCTGTAACTTCTTACCAGGCTCAATACTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTATCTGAAAAGTTTTGCTGTAACTTCTTACCAGGCTCAATACTC  389

seq1  TCTTCCATCCTTGGTCCATTCTATTGCTGAAGTCTTCAAGAGGGCATTCT  449
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATCCTCGGTCCATTCTATTGCTGAAGTCTTCAAGAGGGCATTCT  439

seq1  ATTTTTGTTTTTATTCTTATATCATATATTACATCTACTGTTGTCCCCGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTTATTCTTATATCATATATTACATCTACTGTTGTCCCCGG  489

seq1  CCCTGTTTGCATACCTCCCCTCTACCTGAGATCCAGCTCCTATCCCAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTGCATACCTCCCCTCTACCTGAGATCCAGCTCCTATCCCAGGG  539

seq1  ACATCAACCAAACAAGGCGTTATAAGCTACAATAAGACCAGACACATAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACCAAACAAGGCGTTATAAGCTACAATAAGACCAGACACATAGT  589

seq1  ACCACATGAGGAATAGACAAGGAGGAAAACCCAGTAGAAGGAAAAGGATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGAGGAATAGACAAGGAGGAAAACCCAGTAGAAGGAAAAGGATC  639

seq1  CCTCAAGTAGGCGAAAGAGTCAGGGAGAGGCTCTGAGCCCACTGTTAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTAGGCGAAAGAGTCAGGGAGAGGCTCTGAGCCCACTGTTAGGA  689

seq1  TTTCCATAAGAGCATGGAGCTCCTCAGCCATAACAGAGGGCCTAGAACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAAGAGCATGGAGCTCCTCAGCCATAACAGAGGGCCTAGAACAG  739

seq1  ATCCCTACAGTCTTCCTGACCTCTGCACGTTCCCATGAGTCCTGATCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACAGTCTTCCTGACCTCTGCACGTTCCCATGAGTCCTGATCAGT  789

seq1  TGATTCTGTGGGCCGAGTTCTCCTGGTATGTCCCTGACCCCTCTGGTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTGGGCCGAGTTCTCCTGGTATGTCCCTGACCCCTCTGGTTCC  839

seq1  TCTGTTCCTTCCTTTTGAGGACTCCAGAACTCCACCTAATGTTTGGCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTTCCTTTTGAGGACTCCAGAACTCCACCTAATGTTTGGCTAT  889

seq1  GGGGTTCTGAATCTGCTTTAGTCAATTGCTGGAAGACAGATGTCTCCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTGAATCTGCTTTAGTCAATTGCTGGAAGACAGATGTCTCCTTG  939

seq1  TCTTCTTTGATGATGATTCTGCTAGGTTCCAGTCCTAGCATACTCTGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGATGATGATTCTGCTAGGTTCCAGTCCTAGCATACTCTGCAG  989

seq1  GCAGGACAAACTGTAGATTTTAGGTTTTGTGATTGGGACAGTGTCCCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAAACTGTAGATTTTAGGTTTTGTGATTGGGACAGTGTCCCTCA  1039

seq1  AGAAAGTATTTTTATTGAATTC  1071
      ||||||||||||||||||||||
seq2  AGAAAGTATTTTTATTGAATTC  1061