BAC Information

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BAC

Clone NameB6Ng01-083N18
Chromosome12 (Build37)
Map Location 113,189,621 - 113,321,136
singlet/doubletdoublet
Overlap gene2010107E04Rik, BC048943, Tdrd9
Upstream gene4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N18.bB6Ng01-083N18.g
ACCDH898003DH898004
length1,0471,100
definitionDH898003|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N18, 5' end.DH898004|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,320,063 - 113,321,136)(113,189,621 - 113,190,739)
sequence
gaattccctgtataaccaggctgaccttgaactcagagatctacctaccc
ctgccccccaagtgtggctcttcctgccctagaggattgtggacaaagga
agcagagatgacaaacaggggttcagaagccctgtgagtatgtgtggtga
ataactcacactgggaccagctgcagggagtcagaccaactatactttgg
gtgactcaaggcttataaagttttgggggacggtgtgtagaaacatccag
gatgggcaaaggtcattggctgagggcttagggtaccaaaatgcctcatt
agtctggggaagcatttcaggagtctcagatgctaactgaacaggttctt
accaggagaaagcaagttacataacagttctcaggtagaggcaagcatgg
ggcttagaattccccacacagtcagagaaggagaagatctgctaaatgaa
aggagtctttcatattgtgccaagctcagaggctatccagtcatggtgga
ctttgaccttaattaatcttcccctctttgaacggtagactgagcctcta
gatgaggctggctgctgattagattttcatctagaactggctcatggact
aaggaaggaaacccaggaagattcacacctcttcaaactgtgccaacatg
ggaagatggttaaagggccagaaaaagaaagcaaatgtctggttttaaat
catcagtgatcaaacaggattaagttgaataaagcaaaaggagtcagttc
agggcctggccgagaggttcagcaggaaactgattccaaagaaaaccata
ggccgggcgtggtggcccacgcctttaatcccagcactcgggaggcaaag
gcaggtggatttctgagttcgaggccggcctggtctacaaagtgagttcc
aggacagccagggctatacaagaaaccctgtcttgaaaaccgagagagag
agagagagatgagagagagagagagagatgagagagagagagagagagag
agagagaactgactggagcatgctaatcacggcaagctggtggtcag
gaattctaggctggggcccagaatagatgtgcttaaacagagctctctca
gagtcttggcggagcagccaaggctgagcgctgggacattgagagacccc
aggggaggtggaagagatgagtttacctggatccgttaaaggacactggt
atctttcctccaagttccttccagagaatcagctgctccagacagggacg
aatccccctaatgtccccttccctacctcctcttatagggtcttggcagg
aagagagcaatgccttcctgtctccttgatgacgtatcagccgtgtcagc
cccccaccagtgagagaaaaggcctgtgggatatacccatctgcaagggt
taactgagacaccatgaggataaatgttccctaggcctcagccagctgga
tcccgtgatccagagcctggtgctggcacagccagcaaacaaagatgctt
tgttcatgtacgagaataaacacttcccctggatatttactcccgggctc
aagtgtaatatggggtgtaagttactctttaacaggcaattggatactgg
ctgttgagttctgaactaatttcctggagggaagggatggctacatctgc
ccaggggatgaccagcctcaggagcgcctatggctggccattaccagaat
ctgagaacagacacagtggccactgcaggcttctccaagaggcaggggaa
gcggaatgaaatggaggcccagcaaaggggatgtttattttgccaaggca
aggaacctgcctgtccattcccctgcatccacaccagctgcttgggagaa
ggcagtcatcgtgtgctttgggtgggaataggctgtccagtgccacggtg
cccagccccaagctcattcccaccattaactgttgctacccaagtctaag
cctagtctctagatcagaggcaatggctgacatacatgacctgtcagtct
ttagaacttaagtaaactgcacgagtgagcgtgtgatgctggcaggttct
tgtctgcatgtgcagcgctggtcattcctgacattcaaagttaattgata
gctactgcaccatagtttacagtcaatcatagaaacttgatgtaagactt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113320063_113321136
seq2: B6Ng01-083N18.b_65_1096 (reverse)

seq1  CTGACCACCAGCTTTTCCCGTGAATTAGCCATGCTCC---CATGTCTATG  47
      ||||||||||||  || ||||| ||||| ||||||||   ||  ||| | 
seq2  CTGACCACCAGC--TTGCCGTG-ATTAG-CATGCTCCAGTCAGTTCTCTC  46

seq1  TTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  97
      | | |||                                    |||   |
seq2  TCTCTCT-----------------------------------CTCTCTCT  61

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCG  147
      ||   || |||   |||   |||   || |||   |||   |||   |||
seq2  CTCTCTCATCT--CTCTCTCTCTCTCTCATCT--CTCTCTCTCTCTCTCG  107

seq1  GTTTTTCAAGACAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCA  197
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  G-TTTTCAAGACAGGGTTTC-TTGTATAGCCCTGGCTGTCCTGGAACTCA  155

seq1  CTTTGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTTTGCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGACCAGGCCGGCCTCGAACTCAGAAATCCACCTGCCTTTGCCT  205

seq1  CCCGAGTGCTGGGATTAAAGGCGTGGGCCACCACGCCCGGCCTATGGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTGCTGGGATTAAAGGCGTGGGCCACCACGCCCGGCCTATGGTTT  255

seq1  TCTTTGGAATCAGTTTCCTGCTGAACCTCTCGGCCAGGCCCTGAACTGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAATCAGTTTCCTGCTGAACCTCTCGGCCAGGCCCTGAACTGAC  305

seq1  TCCTTTTGCTTTATTCAACTTAATCCTGTTTGATCACTGATGATTTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCTTTATTCAACTTAATCCTGTTTGATCACTGATGATTTAAAA  355

seq1  CCAGACATTTGCTTTCTTTTTCTGGCCCTTTAACCATCTTCCCATGTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATTTGCTTTCTTTTTCTGGCCCTTTAACCATCTTCCCATGTTGG  405

seq1  CACAGTTTGAAGAGGTGTGAATCTTCCTGGGTTTCCTTCCTTAGTCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTGAAGAGGTGTGAATCTTCCTGGGTTTCCTTCCTTAGTCCATG  455

seq1  AGCCAGTTCTAGATGAAAATCTAATCAGCAGCCAGCCTCATCTAGAGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTCTAGATGAAAATCTAATCAGCAGCCAGCCTCATCTAGAGGCT  505

seq1  CAGTCTACCGTTCAAAGAGGGGAAGATTAATTAAGGTCAAAGTCCACCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACCGTTCAAAGAGGGGAAGATTAATTAAGGTCAAAGTCCACCAT  555

seq1  GACTGGATAGCCTCTGAGCTTGGCACAATATGAAAGACTCCTTTCATTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATAGCCTCTGAGCTTGGCACAATATGAAAGACTCCTTTCATTTA  605

seq1  GCAGATCTTCTCCTTCTCTGACTGTGTGGGGAATTCTAAGCCCCATGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTCTCCTTCTCTGACTGTGTGGGGAATTCTAAGCCCCATGCTT  655

seq1  GCCTCTACCTGAGAACTGTTATGTAACTTGCTTTCTCCTGGTAAGAACCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTACCTGAGAACTGTTATGTAACTTGCTTTCTCCTGGTAAGAACCT  705

seq1  GTTCAGTTAGCATCTGAGACTCCTGAAATGCTTCCCCAGACTAATGAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTAGCATCTGAGACTCCTGAAATGCTTCCCCAGACTAATGAGGC  755

seq1  ATTTTGGTACCCTAAGCCCTCAGCCAATGACCTTTGCCCATCCTGGATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTACCCTAAGCCCTCAGCCAATGACCTTTGCCCATCCTGGATGT  805

seq1  TTCTACACACCGTCCCCCAAAACTTTATAAGCCTTGAGTCACCCAAAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACACCGTCCCCCAAAACTTTATAAGCCTTGAGTCACCCAAAGTA  855

seq1  TAGTTGGTCTGACTCCCTGCAGCTGGTCCCAGTGTGAGTTATTCACCACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGTCTGACTCCCTGCAGCTGGTCCCAGTGTGAGTTATTCACCACA  905

seq1  CATACTCACAGGGCTTCTGAACCCCTGTTTGTCATCTCTGCTTCCTTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCACAGGGCTTCTGAACCCCTGTTTGTCATCTCTGCTTCCTTTGT  955

seq1  CCACAATCCTCTAGGGCAGGAAGAGCCACACTTGGGGGGCAGGGGTAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCCTCTAGGGCAGGAAGAGCCACACTTGGGGGGCAGGGGTAGGT  1005

seq1  AGATCTCTGAGTTCAAGGTCAGCCTGG  1074
      |||||||||||||||||||||||||||
seq2  AGATCTCTGAGTTCAAGGTCAGCCTGG  1032

seq1: chr12_113189621_113190739
seq2: B6Ng01-083N18.g_67_1166

seq1  GAATTCTAGGCTGGGGCCCAGAATAGATGTGCTTAAACAGAGCTCTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCTGGGGCCCAGAATAGATGTGCTTAAACAGAGCTCTCTCA  50

seq1  GAGTCTTGGCGGAGCAGCCAAGGCTGAGCGCTGGGACATTGAGAGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGCGGAGCAGCCAAGGCTGAGCGCTGGGACATTGAGAGACCCC  100

seq1  AGGGGAGGTGGAAGAGATGAGTTTACCTGGATCCGTTAAAGGACACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGTGGAAGAGATGAGTTTACCTGGATCCGTTAAAGGACACTGGT  150

seq1  ATCTTTCCTCCAAGTTCCTTCCAGAGAATCAGCTGCTCCAGACAGGGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTCCAAGTTCCTTCCAGAGAATCAGCTGCTCCAGACAGGGACG  200

seq1  AATCCCCCTAATGTCCCCTTCCCTACCTCCTCTTATAGGGTCTTGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTAATGTCCCCTTCCCTACCTCCTCTTATAGGGTCTTGGCAGG  250

seq1  AAGAGAGCAATGCCTTCCTGTCTCCTTGATGACGTATCAGCCGTGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAATGCCTTCCTGTCTCCTTGATGACGTATCAGCCGTGTCAGC  300

seq1  CCCCCACCAGTGAGAGAAAAGGCCTGTGGGATATACCCATCTGCAAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCAGTGAGAGAAAAGGCCTGTGGGATATACCCATCTGCAAGGGT  350

seq1  TAACTGAGACACCATGAGGATAAATGTTCCCTAGGCCTCAGCCAGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGACACCATGAGGATAAATGTTCCCTAGGCCTCAGCCAGCTGGA  400

seq1  TCCCGTGATCCAGAGCCTGGTGCTGGCACAGCCAGCAAACAAAGATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGATCCAGAGCCTGGTGCTGGCACAGCCAGCAAACAAAGATGCTT  450

seq1  TGTTCATGTACGAGAATAAACACTTCCCCTGGATATTTACTCCCGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTACGAGAATAAACACTTCCCCTGGATATTTACTCCCGGGCTC  500

seq1  AAGTGTAATATGGGGTGTAAGTTACTCTTTAACAGGCAATTGGATACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATATGGGGTGTAAGTTACTCTTTAACAGGCAATTGGATACTGG  550

seq1  CTGTTGAGTTCTGAACTAATTTCCTGGAGGGAAGGGATGGCTACATCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTTCTGAACTAATTTCCTGGAGGGAAGGGATGGCTACATCTGC  600

seq1  CCAGGGGATGACCAGCCTCAGGAGCGCCTATGGCTGGCCATTACCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATGACCAGCCTCAGGAGCGCCTATGGCTGGCCATTACCAGAAT  650

seq1  CTGAGAACAGACACAGTGGCCACTGCAGGCTTCTCCAAGAGGCAGGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAGACACAGTGGCCACTGCAGGCTTCTCCAAGAGGCAGGGGAA  700

seq1  GCGGAATGAAATGGAGGCCCAGCAAAGGGGATGTTTATTTTGCCAAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAATGAAATGGAGGCCCAGCAAAGGGGATGTTTATTTTGCCAAGGCA  750

seq1  AGGAACCTGCCTGTCCATTCCCCTGCATCCACACCAGCTGCTTGGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGCCTGTCCATTCCCCTGCATCCACACCAGCTGCTTGGGAGAA  800

seq1  GGCAGTCATCGTGTGCTTTGGGTGGGAATAGGCTGTCCAGTGCCACGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCATCGTGTGCTTTGGGTGGGAATAGGCTGTCCAGTGCCACGGTG  850

seq1  CCCAGCCCCAAGCTCCATTCCCACCATTAACTGTTGCTACCCAAGTCTAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCAAGCT-CATTCCCACCATTAACTGTTGCTACCCAAGTCTAA  899

seq1  GCCTAGTCTTCTAGATCAGAGGCAATGGCTGACATACCATGACCTGTCAG  950
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  GCCTAGTC-TCTAGATCAGAGGCAATGGCTGACATA-CATGACCTGTCAG  947

seq1  TCTTTAGAACTTAAGTAAAACTGCACGGAGTGAGGCGTGGTGATTGCTGG  1000
      |||||||||||||||| ||||||||| |||||| |||| |||| ||||||
seq2  TCTTTAGAACTTAAGT-AAACTGCAC-GAGTGA-GCGT-GTGA-TGCTGG  992

seq1  CAGGGTCCTTGTCTGGCATGTGGCAGGCGCTGGGTTCCATCCCTGACATC  1050
      || ||| ||||||| |||||| ||| |||||||    ||| |||||||| 
seq2  CA-GGTTCTTGTCT-GCATGT-GCA-GCGCTGG---TCATTCCTGACAT-  1034

seq1  TCAAAAGTAAATGAATAGCTACTGCA-CATAGTTTTACATGTCAATCATT  1099
      || ||||| |||  |||||||||||| ||||| |||||| |||||||| |
seq2  TC-AAAGTTAATTGATAGCTACTGCACCATAG-TTTACA-GTCAATCA-T  1080

seq1  AGAAACCTAGATG-AAGACTT  1119
      ||||| || |||| |||||||
seq2  AGAAA-CTTGATGTAAGACTT  1100