BAC Information

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BAC

Clone NameB6Ng01-084B13
Chromosome12 (Build37)
Map Location 33,964,174 - 34,061,406
singlet/doubletdoublet
Overlap geneAtxn7l1
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084B13.bB6Ng01-084B13.g
ACCDH898164DH898165
length1,1131,103
definitionDH898164|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B13, 5' end.DH898165|Mus musculus domesticus DNA, BAC clone: B6Ng01-084B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,060,260 - 34,061,406)(33,964,174 - 33,965,279)
sequence
gaattcaccatcttctacttcatcgtctcctgctggaatacatgccctct
tggaaaggctgttctgcttagaatacccccattcacaaggaaaacaaaac
ataataccataaagtttgtaaaaaccacaagactttttttttttacaaac
atataaattattttatttacaaagccatgttacaaaaaaaaaaaagcaaa
aaaaaaaaaatacaatcacttactggagaatatttccagacctggtgctg
aaccacgggagtatcaatagatacgtatttgttctttcttttaacaactg
taagccatagagtttactatttacacctatgtcggacatttatccgctta
caacatcacaggcatggaatggactctatctgatagcgctaattcataaa
ggtataaaggggcgggacaaaggaggaaaatacttagtgttacaaaatat
ggatcatagaaaagaaacccactccatgagtgtggcctttgttgaatatg
attggacatgctctcttcaaaattcttctggaaaagcttctaaaattggt
tagtaggaaaggacaaatgaacaggtgcaaattcttgtctgtgcaacaat
agttattgaatttaccccatgactgaccagctacataaaacccacagaat
tctgttaaggtgccatgggctgacagcataacaaaatataaggtgtaaat
agaaaatttcattttttccttttttttttttaaaacaagagttcactgag
aatcagcaataatagaatacgctgtataaactattttctacaaaggttga
tcagcgttatttacagttggtacatcgatacaaaagaaggcatacaagtt
atccaactcgattttttgatttttaattttatatggctgacaggtctatg
cattgcattatgcttaacatccagagcctctgtggctggcgacgtgtcag
gagctccccggtggactgggggtgtgagcggcaggggcagagacagagct
gagtgggtggtggggtacagaagaccgaggtaccgctctccggatgcgta
ggtgtcagtgatcatgagaacaatcagatcttcttgcatcatccctcccc
tagctgcagcatt
gaattcagaccccagattgcagcttacagttcagataagaacttctggaa
aatgccctgcccaactgtggacacagagatgggacacaatacttggactt
tctggcctgcccaggtgtcctctagctgcttagcaggaagagagagagga
gattcctgataaagactcagaagtcaacctctgatgtgacctgccatttg
ttaatgtagtcattcctttaaaaggagttagtaaaacgagaattctatgt
ttattctatgattgtttataaaactctgattttagctcttactgcttccc
atcttaaccgaattggtgagctatttagttgacattagcattccatactt
gtaaatcttgttaaatcattaagttggttaatggttcaacttctgatttt
aaaatagtaatattcatcctggtgtggtggcatgtgcctttgatcccagc
atgcaggaggcagtggcaggccaatctcagtgacttcaaggccagcctga
tctactgagtgagtttcaggccagcctgatctactgagtgagttccaggc
cagcctgatctactgagtgagcttcaggccagcctgatctactgagtgag
ttccaggccagcctgatctactgagtgagctccaggccaacctaatttac
tgagtgaggtccaggccagcatgatctactgagtgagtcccaggccagcc
tgatctactgagttccaggattgccagaatgatgtacagagaccctattt
tgtgaaaacccaaaataaataaaaataaataagtaaatattcttaatgtc
atacaaaatttttgcagattaacgaggaaatgggggatgtattaatttaa
gaatgggcatgagtagacagttcacaagagatcaaattcaagtggccaat
taacatgaaaaatgttcaaccgtactggtaatcaagaacaaaattaaaac
aagcacagagcattttcattgttacaaagtggtgagtgggtgtgacttac
tgttacccatttttatcagatgtaatcaagacctcttacagctccgggta
tgtagaatagggctccctgtccgttgatctgggcctgttattataataaa
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34060260_34061406
seq2: B6Ng01-084B13.b_45_1157 (reverse)

seq1  AATGCTTGCAGCTAGGGGGGAGGGGAATGGAATGCAAAGAAAAGATTTCC  50
      ||||| ||||||||  ||||||||  |||  |||||   | ||||| |  
seq2  AATGC-TGCAGCTA--GGGGAGGG--ATG--ATGCA---AGAAGATCT--  38

seq1  TTTGGATTTGTTCTCATGGAATTCAACTGGACCAACCCCTAACGCATCCG  100
          || |||||||||||  ||   ||||     || ||| |||||||||
seq2  ----GA-TTGTTCTCATG--AT--CACTG-----ACACCT-ACGCATCCG  73

seq1  GAGAGCGGTACCCTTCGGGTCTTTCTGTACCCCA-CACCCACTCAGCCTT  149
      ||||||||||||  || |||| |||||||||||| ||||||||||||  |
seq2  GAGAGCGGTACC--TC-GGTC-TTCTGTACCCCACCACCCACTCAGC--T  117

seq1  CTGTCTCTGCCCCTTGGCCGCTCACACCCCCAGTCCACCGGGGAGCTCCT  199
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCCCT--GCCGCTCACACCCCCAGTCCACCGGGGAGCTCCT  165

seq1  GACACGTCGCCAGCCACAGAGGCTCTGGATGTTAAGCATAATGCAATGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTCGCCAGCCACAGAGGCTCTGGATGTTAAGCATAATGCAATGCA  215

seq1  TAGACCTGTCAGCCATATAAAATTAAAAATCAAAAAATCGAGTTGGATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGTCAGCCATATAAAATTAAAAATCAAAAAATCGAGTTGGATAA  265

seq1  CTTGTATGCCTTCTTTTGTATCGATGTACCAACTGTAAATAACGCTGATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGCCTTCTTTTGTATCGATGTACCAACTGTAAATAACGCTGATC  315

seq1  AACCTTTGTAGAAAATAGTTTATACAGCGTATTCTATTATTGCTGATTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGTAGAAAATAGTTTATACAGCGTATTCTATTATTGCTGATTCT  365

seq1  CAGTGAACTCTTGTTTTAAAAAAAAAAAAGGAAAAAATGAAATTTTCTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACTCTTGTTTTAAAAAAAAAAAAGGAAAAAATGAAATTTTCTAT  415

seq1  TTACACCTTATATTTTGTTATGCTGTCAGCCCATGGCACCTTAACAGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTTATATTTTGTTATGCTGTCAGCCCATGGCACCTTAACAGAAT  465

seq1  TCTGTGGGTTTTATGTAGCTGGTCAGTCATGGGGTAAATTCAATAACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTTTTATGTAGCTGGTCAGTCATGGGGTAAATTCAATAACTAT  515

seq1  TGTTGCACAGACAAGAATTTGCACCTGTTCATTTGTCCTTTCCTACTAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCACAGACAAGAATTTGCACCTGTTCATTTGTCCTTTCCTACTAAC  565

seq1  CAATTTTAGAAGCTTTTCCAGAAGAATTTTGAAGAGAGCATGTCCAATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAGAAGCTTTTCCAGAAGAATTTTGAAGAGAGCATGTCCAATCA  615

seq1  TATTCAACAAAGGCCACACTCATGGAGTGGGTTTCTTTTCTATGATCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACAAAGGCCACACTCATGGAGTGGGTTTCTTTTCTATGATCCAT  665

seq1  ATTTTGTAACACTAAGTATTTTCCTCCTTTGTCCCGCCCCTTTATACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAACACTAAGTATTTTCCTCCTTTGTCCCGCCCCTTTATACCTT  715

seq1  TATGAATTAGCGCTATCAGATAGAGTCCATTCCATGCCTGTGATGTTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTAGCGCTATCAGATAGAGTCCATTCCATGCCTGTGATGTTGTA  765

seq1  AGCGGATAAATGTCCGACATAGGTGTAAATAGTAAACTCTATGGCTTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGATAAATGTCCGACATAGGTGTAAATAGTAAACTCTATGGCTTACA  815

seq1  GTTGTTAAAAGAAAGAACAAATACGTATCTATTGATACTCCCGTGGTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAAAGAAAGAACAAATACGTATCTATTGATACTCCCGTGGTTCA  865

seq1  GCACCAGGTCTGGAAATATTCTCCAGTAAGTGATTGTATTTTTTTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGGTCTGGAAATATTCTCCAGTAAGTGATTGTATTTTTTTTTTTT  915

seq1  TGCTTTTTTTTTTTTGTAACATGGCTTTGTAAATAAAATAATTTATATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTTTTTTGTAACATGGCTTTGTAAATAAAATAATTTATATGT  965

seq1  TTGTAAAAAAAAAAAGTCTTGTGGTTTTTACAAACTTTATGGTATTATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAAAAAAAGTCTTGTGGTTTTTACAAACTTTATGGTATTATGT  1015

seq1  TTTGTTTTCCTTGTGAATGGGGGTATTCTAAGCAGAACAGCCTTTCCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCCTTGTGAATGGGGGTATTCTAAGCAGAACAGCCTTTCCAAG  1065

seq1  AGGGCATGTATTCCAGCAGGAGACGATGAAGTAGAAGATGGTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTATTCCAGCAGGAGACGATGAAGTAGAAGATGGTGAATTC  1113

seq1: chr12_33964174_33965279
seq2: B6Ng01-084B13.g_71_1173

seq1  GAATTCAGACCCCAGATTGCAGCTTACAGTTCAGATAAGAACTTCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCCCAGATTGCAGCTTACAGTTCAGATAAGAACTTCTGGAA  50

seq1  AATGCCCTGCCCAACTGTGGACACAGAGATGGGACACAATACTTGGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTGCCCAACTGTGGACACAGAGATGGGACACAATACTTGGACTT  100

seq1  TCTGGCCTGCCCAGGTGTCCTCTAGCTGCTTAGCAGGAAGAGAGAGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTGCCCAGGTGTCCTCTAGCTGCTTAGCAGGAAGAGAGAGAGGA  150

seq1  GATTCCTGATAAAGACTCAGAAGTCAACCTCTGATGTGACCTGCCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGATAAAGACTCAGAAGTCAACCTCTGATGTGACCTGCCATTTG  200

seq1  TTAATGTAGTCATTCCTTTAAAAGGAGTTAGTAAAACGAGAATTCTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGTCATTCCTTTAAAAGGAGTTAGTAAAACGAGAATTCTATGT  250

seq1  TTATTCTATGATTGTTTATAAAACTCTGATTTTAGCTCTTACTGCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATGATTGTTTATAAAACTCTGATTTTAGCTCTTACTGCTTCCC  300

seq1  ATCTTAACCGAATTGGTGAGCTATTTAGTTGACATTAGCATTCCATACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACCGAATTGGTGAGCTATTTAGTTGACATTAGCATTCCATACTT  350

seq1  GTAAATCTTGTTAAATCATTAAGTTGGTTAATGGTTCAACTTCTGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCTTGTTAAATCATTAAGTTGGTTAATGGTTCAACTTCTGATTTT  400

seq1  AAAATAGTAATATTCATCCTGGTGTGGTGGCATGTGCCTTTGATCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAATATTCATCCTGGTGTGGTGGCATGTGCCTTTGATCCCAGC  450

seq1  ATGCAGGAGGCAGTGGCAGGCCAATCTCAGTGACTTCAAGGCCAGCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAGGCAGTGGCAGGCCAATCTCAGTGACTTCAAGGCCAGCCTGA  500

seq1  TCTACTGAGTGAGTTTCAGGCCAGCCTGATCTACTGAGTGAGTTCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGAGTGAGTTTCAGGCCAGCCTGATCTACTGAGTGAGTTCCAGGC  550

seq1  CAGCCTGATCTACTGAGTGAGCTTCAGGCCAGCCTGATCTACTGAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATCTACTGAGTGAGCTTCAGGCCAGCCTGATCTACTGAGTGAG  600

seq1  TTCCAGGCCAGCCTGATCTACTGAGTGAGCTCCAGGCCAACCTAATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGCCAGCCTGATCTACTGAGTGAGCTCCAGGCCAACCTAATTTAC  650

seq1  TGAGTGAGGTCCAGGCCAGCATGATCTACTGAGTGAGTCCCAGGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGTCCAGGCCAGCATGATCTACTGAGTGAGTCCCAGGCCAGCC  700

seq1  TGATCTACTGAGTTCCAGGATTGCCAGAATGATGTACAGAGACCCTA-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATCTACTGAGTTCCAGGATTGCCAGAATGATGTACAGAGACCCTATTT  750

seq1  TGTGAAAACCCAAAATAAATAAAAATAAATAAGT-AATATTCTTAATGTC  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTGAAAACCCAAAATAAATAAAAATAAATAAGTAAATATTCTTAATGTC  800

seq1  ATACAAAATTTTTGCAGATTAACGAGGAAATGGGGGATGTATTAATTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATACAAAATTTTTGCAGATTAACGAGGAAATGGGGGATGTATTAATTTAA  850

seq1  GAATGGGCATGAGTAGACAGTTCACAAGAGATCAAATTCAAGTGGCCAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCATGAGTAGACAGTTCACAAGAGATCAAATTCAAGTGGCCAAT  900

seq1  TAACATGAAAAATGTTCAACCGTACTGGTAATCAAGAACAAAAATTAAAA  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAACATGAAAAATGTTCAACCGTACTGGTAATCAAGAAC-AAAATTAAAA  949

seq1  CAAGCACAGAGCATTTTTCATGTAACAAAGTGGTGAGTGTGTGTGACTTA  998
      |||||||||||||||||   ||| ||||||||||||||| ||||||||||
seq2  CAAGCACAGAGCATTTTCATTGTTACAAAGTGGTGAGTGGGTGTGACTTA  999

seq1  CTGTTACCCAATTTTTATCAAGATGTAATCCAGA-CTCTAACAAGCCCGC  1047
      ||||||||| ||||||||| |||||||||| ||| |||| || ||| | |
seq2  CTGTTACCC-ATTTTTATC-AGATGTAATCAAGACCTCTTAC-AGCTC-C  1045

seq1  GGGTATGTAG-ATAGGGCTCCCTGTCTGTTGGATCTGTGGCCTGGTATTT  1096
      |||||||||| ||||||||||||||| ||| |||||| |||||| |||| 
seq2  GGGTATGTAGAATAGGGCTCCCTGTCCGTT-GATCTG-GGCCTGTTATTA  1093

seq1  ATATAAAATA  1106
        ||||||||
seq2  TAATAAAATA  1103