BAC Information

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BAC

Clone NameB6Ng01-084G07
Chromosome12 (Build37)
Map Location 53,674,389 - 53,848,386
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneCoch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084G07.bB6Ng01-084G07.g
ACCDH898368DH898369
length1171,129
definitionDH898368|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G07, 5' end.DH898369|Mus musculus domesticus DNA, BAC clone: B6Ng01-084G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,848,270 - 53,848,386)(53,674,389 - 53,675,523)
sequence
gaattctagaagccgattcaaagcaaacagtatagtgtgtggaaaaatca
aagagcgctcagatcagcaaaggggttatcggaagggcctgtgtggaaag
ggggggggggggtagga
gaattcacattgtataaggctcgactttttttgttcaaaagctattctat
gtgattgcaagcatctactgtgagcataaagcaccagttgactgcaagtt
aagctagaactagataaccatgtttgtttgctcagtcaaagtccaagggc
caaagcataacaacaagattatttagaatttaacgtccaacaaaagtggg
gctttggtcagtgagtaggctctgcttgttgccaagtctaataatgagtt
ggaccctagaacacattttgtacaaggagaaaactacaataacatctgtc
ctccccacatgccttcatgcacacacccacatacatacatacaattaata
tcccttgtggattaagtaggttttctgtatgagaatgtatttttaaggga
ttcagactgctgctttacatgatctgaagtaaataaaagaacttttagaa
gttacattgggggaaaaaagagccacattaaattgtacttgtaattccaa
gtttacatgcatccatttgactttgcaggtgagttttactaaatctttaa
agcctttactagattgatcaagcccacataaacttgccaacaaaattcaa
aagaatatagctgaggtaatcttcatgaatttaaatgcaaataaccattt
gtatgtaatgaaatttataattaagagttaattttgaaaaaacaatgcag
aataaaggaaaagtatgtgattatgtcagatataaaaagtttttttaaaa
atttcatataggtatacaaatatgatcagctggtgttgtcatactgtctt
caggcaaacgaaaaagaaaataaagacaaaaaaactaaaaacatcactgg
atatgcaggacactcagtcctacaaggttcagctcagcagaataatgcag
ttatagttattatgacctaaggataagaaagaacaggtcttttgaatgtg
cttcatcttttgtcccctactacagacaggcacagtatataaaagtcatc
tgctgaattttttatagtcttttgaagacaaaacaaagacgaaggcccct
cagctttggcattgttggattttgacacgaatggtatttgtattgagaga
tgctctgtatattgtagatctctagcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53848270_53848386
seq2: B6Ng01-084G07.b_40_156 (reverse)

seq1  TCCTACCCCCCCCCCCCCTTTCCACACAGGCCCTTCCGATAACCCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCCCCCCCCCCTTTCCACACAGGCCCTTCCGATAACCCCTTTG  50

seq1  CTGATCTGAGCGCTCTTTGATTTTTCCACACACTATACTGTTTGCTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGAGCGCTCTTTGATTTTTCCACACACTATACTGTTTGCTTTGA  100

seq1  ATCGGCTTCTAGAATTC  117
      |||||||||||||||||
seq2  ATCGGCTTCTAGAATTC  117

seq1: chr12_53674389_53675523
seq2: B6Ng01-084G07.g_68_1196

seq1  GAATTCACATTGTATAAGGCTCGACTTTTTTTGTTCAAAAGCTATTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGTATAAGGCTCGACTTTTTTTGTTCAAAAGCTATTCTAT  50

seq1  GTGATTGCAAGCATCTACTGTGAGCATAAAGCACCAGTTGACTGCAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGCAAGCATCTACTGTGAGCATAAAGCACCAGTTGACTGCAAGTT  100

seq1  AAGCTAGAACTAGATAACCATGTTTGTTTGCTCAGTCAAAGTCCAAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAACTAGATAACCATGTTTGTTTGCTCAGTCAAAGTCCAAGGGC  150

seq1  CAAAGCATAACAACAAGATTATTTAGAATTTAACGTCCAACAAAAGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATAACAACAAGATTATTTAGAATTTAACGTCCAACAAAAGTGGG  200

seq1  GCTTTGGTCAGTGAGTAGGCTCTGCTTGTTGCCAAGTCTAATAATGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTCAGTGAGTAGGCTCTGCTTGTTGCCAAGTCTAATAATGAGTT  250

seq1  GGACCCTAGAACACATTTTGTACAAGGAGAAAACTACAATAACATCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTAGAACACATTTTGTACAAGGAGAAAACTACAATAACATCTGTC  300

seq1  CTCCCCACATGCCTTCATGCACACACCCACATACATACATACAATTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACATGCCTTCATGCACACACCCACATACATACATACAATTAATA  350

seq1  TCCCTTGTGGATTAAGTAGGTTTTCTGTATGAGAATGTATTTTTAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTGGATTAAGTAGGTTTTCTGTATGAGAATGTATTTTTAAGGGA  400

seq1  TTCAGACTGCTGCTTTACATGATCTGAAGTAAATAAAAGAACTTTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTGCTGCTTTACATGATCTGAAGTAAATAAAAGAACTTTTAGAA  450

seq1  GTTACATTGGGGGAAAAAAGAGCCACATTAAATTGTACTTGTAATTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTGGGGGAAAAAAGAGCCACATTAAATTGTACTTGTAATTCCAA  500

seq1  GTTTACATGCATCCATTTGACTTTGCAGGTGAGTTTTACTAAATCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATGCATCCATTTGACTTTGCAGGTGAGTTTTACTAAATCTTTAA  550

seq1  AGCCTTTACTAGATTGATCAAGCCCACATAAACTTGCCAACAAAATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTACTAGATTGATCAAGCCCACATAAACTTGCCAACAAAATTCAA  600

seq1  AAGAATATAGCTGAGGTAATCTTCATGAATTTAAATGCAAATAACCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAGCTGAGGTAATCTTCATGAATTTAAATGCAAATAACCATTT  650

seq1  GTATGTAATGAAATTTATAATTAAGAGTTAATTTTGAAAAAACAATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAATGAAATTTATAATTAAGAGTTAATTTTGAAAAAACAATGCAG  700

seq1  AATAAAGGAAAAGTATGTGATTATGTCAGATATAAAAAGTTTTTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAAAAGTATGTGATTATGTCAGATATAAAAAGTTTTTTTAAAA  750

seq1  ATTTCATATAGGTATACAAATATGATCAGCTGGTGTTGTCATACTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATATAGGTATACAAATATGATCAGCTGGTGTTGTCATACTGTCTT  800

seq1  CAGGCAAACGAAAAAGAAAATAAAGACAAAAAAAACTAAAAACATCACTG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGCAAACGAAAAAGAAAATAAAGAC-AAAAAAACTAAAAACATCACTG  849

seq1  GATATGCAGGACACTCAGTCCTACAAGGTTCAGCTCAGCAGAATAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGGACACTCAGTCCTACAAGGTTCAGCTCAGCAGAATAATGCA  899

seq1  GTTATAAGTTATTATGACCTAAGGAATAAGAAAGAACAGGTCTTTTGAAT  950
      ||||| |||||||||||||||||| |||||||||||||||||||||||| 
seq2  GTTAT-AGTTATTATGACCTAAGG-ATAAGAAAGAACAGGTCTTTTGAA-  946

seq1  TGTGCTTCATCTTTTGTCCCCTACTACAGACAGGCACAGTATATAAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCATCTTTTGTCCCCTACTACAGACAGGCACAGTATATAAAAGT  996

seq1  CCATCTGCTGGACTTTTTATAG-CCTTTGAAGACAAAACAGAGACGAAGG  1049
       ||||||||| | ||||||||| | ||||||||||||||| |||||||||
seq2  -CATCTGCTGAATTTTTTATAGTCTTTTGAAGACAAAACAAAGACGAAGG  1045

seq1  CCCCTCAGCTTTGGCATTGTTGGTATTTGGACACGATGGTTATTTGTATT  1099
      ||||||||||||||||||||||| |||| |||||||  | ||||||||||
seq2  CCCCTCAGCTTTGGCATTGTTGG-ATTTTGACACGAATGGTATTTGTATT  1094

seq1  GAGAGATGTCTTGTATATTGTAAGATCTCTAGCAAC  1135
      ||||||||   |||||||||| ||||||||||||||
seq2  GAGAGATGCTCTGTATATTGT-AGATCTCTAGCAAC  1129