BAC Information

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BAC

Clone NameB6Ng01-084J07
Chromosome12 (Build37)
Map Location 86,306,549 - 86,475,738
singlet/doubletdoublet
Overlap geneFcf1, Ylpm1, Prox2, Dlst
Upstream geneAcot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik
Downstream geneRps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084J07.bB6Ng01-084J07.g
ACCDH898495DH898496
length8271,244
definitionDH898495|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J07, 5' end.DH898496|Mus musculus domesticus DNA, BAC clone: B6Ng01-084J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,474,874 - 86,475,738)(86,306,549 - 86,307,822)
sequence
gaattcccctaccagcagcaattcttaaggaccctgcttcttcctgggac
agggcaccagagggagggcctccctgcagacaggatcagcagatgagagg
tgtgtgggaaagtaaggctctgttgaagcctctactccatcatgcctatc
cattggggtcatcctgggttggtgaccaaccctatcctgtccattgcccc
tcgcacactcctgctcctaggagatggccctcaccgttcataaccagaca
tgtgcttataatgatgcacatgtggcaaccaagtccaaatggtattagga
gtgttcgtgcctccccactctatctcagaaatgatgcaagcccttcaaag
ggaaactgcccctggtgttttgaaggggattcacataggtgggagcctca
atttctcaagaattggcttctcaggggcatggggccccctgacaggaacc
cagggcactaagacattagtgggctctcctggctggctgttaaaagcaat
atgcctaaaatatgggatgggggcttggtatgctgctcagagataagaat
atacaaagatcctgcgtccaccagtagctccaccagatagccaactcagg
aggagtagtagctttcgtgatacgacattgtggttgccacatgatggagg
ctgtaaagcttcgagggtcaaaggagcacagatccggagcctgttgagaa
cattgcccttatttcatcaatcagtctcttaatatttagtacaagtttga
tggtgtaatgtagtaacaatgctgcagcctcatactgactctccctcccc
cagcttgttgatacaagaaaaaggcat
gaattctggattggattctgcacagaaaagagaaggtgaggtgacatttt
tgtgatatccaagtctgtagtttagtaagaaatcatctaccaattcttag
acatgacagatgtaccgtggttatgtaagaagtgaacatttgaaagagtg
tgatgaaaagcagagaagaacactgtatttcgcttccctaatcactgccc
caacttggacagtgcaaggttcaaacctttattaaatatttttctactcc
tttctacatactatttgcccacttgcatttccttccttaccaaaatgtga
aaaactgcttcatacttggaaggtctccattgctttttcttccaaatagc
ttgaccatttacacctgaagctatccttgcatttgaaccttccaaagtag
atgagggttaaaataatatggaccaggtctctgttgaaaattgaaagaac
catattaactattgactactagttaatactattatcatattacacaaaat
gtttgttgcttattattaaattaccattatctgatcactggccagaaagt
acaatgagcacaaaatgcaatgaatattagcattttaacactaatatcaa
agtgcacctaaacaaatacattagctgcacatacatgaacacagacacat
gtgtacacacaccctgtaagcatacacatatatgaacacagacacatgtg
tacacacaccctgtaagcatacacatatatgaacacagacatgcacatgc
acatacacaggacaacatgtaaaccatctcataagtctggaaatgttact
attaaaaatgaagactaagcatttaataacccttcaaaaatatgtcacca
aaaaaataagtaactgaaatttaacctaagatatttattggctagagcca
tttcaaaggtaaatgagggctctggctataactcagttgggttgagttcc
ttacccagcatgcttagtagatcaactactgggcatggtgacacacttta
atcctagcacttgggaagcagagcagtggacttctggagttcagaccatt
ctgttctacagagtgagttccagacatcaagctgtataaacagcaaacca
ttgagttctaggttatccctaattgttcaagccagtctgttgaacactaa
aaacttttcttaacacacacaccaacaaaacccgtaataatatccaatga
ctactcatatgttcaactctaatgtgtagggtagtgtaagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86474874_86475738
seq2: B6Ng01-084J07.b_45_871 (reverse)

seq1  ATGCCCTTTTTTCTTGTAATCCAAGACAAGCTGGGGGGAGGGGAAGAGGT  50
      |||||  |||||||||| |||    ||||||| |||||||||  ||| ||
seq2  ATGCC--TTTTTCTTGT-ATC---AACAAGCT-GGGGGAGGG--AGA-GT  40

seq1  CAGTATTGAGTGCCTGCAGCATCTGCTACTACATCTACACCATTCAGAAC  100
      ||||||   | | ||||||||| || |||||||| ||||||| ||| |||
seq2  CAGTAT---GAGGCTGCAGCAT-TGTTACTACAT-TACACCA-TCA-AAC  83

seq1  TTGTAACTAAAATATTTAAAGAGACTGATTTTGAATGAAAATTAAAGGGC  150
      |||| ||| |||||||  ||||||||||||    ||||||    ||||||
seq2  TTGT-ACT-AAATATT--AAGAGACTGATT---GATGAAA---TAAGGGC  123

seq1  AAATGTTCTCAAACAGGGCTCCGGGATCTGTGCTCCTTTTGACCCTCGAG  200
       ||||||||| |||| |||||| ||||||||||||| |||||||||||| 
seq2  -AATGTTCTC-AACA-GGCTCC-GGATCTGTGCTCC-TTTGACCCTCGAA  168

seq1  GCTTTACAGCCTCCATCATTGTTGGCAACCACAATGTCGTTATCACCGAA  250
      |||||||||||||||||||   ||||||||||||||||| ||||| ||||
seq2  GCTTTACAGCCTCCATCAT--GTGGCAACCACAATGTCG-TATCA-CGAA  214

seq1  AGCTACTACTTCCTCCTGAGTTGGCTATCTTGGTGGAGCTACTGGTGGAC  300
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTACTAC-TCCTCCTGAGTTGGCTATC-TGGTGGAGCTACTGGTGGAC  262

seq1  GCAGGATCTTTGTATATTCTTATCTCTGAGCAGCATACCAAGCCCCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCTTTGTATATTCTTATCTCTGAGCAGCATACCAAGCCCCCATC  312

seq1  CCATATTTTAGGCATATTGCTTTTAACAGCCAGCCAGGAGAGCCCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTAGGCATATTGCTTTTAACAGCCAGCCAGGAGAGCCCACTAA  362

seq1  TGTCTTAGTGCCCTGGGTTCCTGTCAGGGGGCCCCATGCCCCTGAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGTGCCCTGGGTTCCTGTCAGGGGGCCCCATGCCCCTGAGAAGC  412

seq1  CAATTCTTGAGAAATTGAGGCTCCCACCTATGTGAATCCCCTTCAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGAGAAATTGAGGCTCCCACCTATGTGAATCCCCTTCAAAACA  462

seq1  CCAGGGGCAGTTTCCCTTTGAAGGGCTTGCATCATTTCTGAGATAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCAGTTTCCCTTTGAAGGGCTTGCATCATTTCTGAGATAGAGTG  512

seq1  GGGAGGCACGAACACTCCTAATACCATTTGGACTTGGTTGCCACATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCACGAACACTCCTAATACCATTTGGACTTGGTTGCCACATGTGC  562

seq1  ATCATTATAAGCACATGTCTGGTTATGAACGGTGAGGGCCATCTCCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATAAGCACATGTCTGGTTATGAACGGTGAGGGCCATCTCCTAGG  612

seq1  AGCAGGAGTGTGCGAGGGGCAATGGACAGGATAGGGTTGGTCACCAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGTGTGCGAGGGGCAATGGACAGGATAGGGTTGGTCACCAACCC  662

seq1  AGGATGACCCCAATGGATAGGCATGATGGAGTAGAGGCTTCAACAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACCCCAATGGATAGGCATGATGGAGTAGAGGCTTCAACAGAGCC  712

seq1  TTACTTTCCCACACACCTCTCATCTGCTGATCCTGTCTGCAGGGAGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCCCACACACCTCTCATCTGCTGATCCTGTCTGCAGGGAGGCCC  762

seq1  TCCCTCTGGTGCCCTGTCCCAGGAAGAAGCAGGGTCCTTAAGAATTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGGTGCCCTGTCCCAGGAAGAAGCAGGGTCCTTAAGAATTGCTG  812

seq1  CTGGTAGGGGAATTC  865
      |||||||||||||||
seq2  CTGGTAGGGGAATTC  827

seq1: chr12_86306549_86307822
seq2: B6Ng01-084J07.g_72_1315

seq1  GAATTCTGGATTGGATTCTGCACAGAAAAGAGAAGGTGAGGTGACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATTGGATTCTGCACAGAAAAGAGAAGGTGAGGTGACATTTT  50

seq1  TGTGATATCCAAGTCTGTAGTTTAGTAAGAAATCATCTACCAATTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATCCAAGTCTGTAGTTTAGTAAGAAATCATCTACCAATTCTTAG  100

seq1  ACATGACAGATGTACCGTGGTTATGTAAGAAGTGAACATTTGAAAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGATGTACCGTGGTTATGTAAGAAGTGAACATTTGAAAGAGTG  150

seq1  TGATGAAAAGCAGAGAAGAACACTGTATTTCGCTTCCCTAATCACTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAAGCAGAGAAGAACACTGTATTTCGCTTCCCTAATCACTGCCC  200

seq1  CAACTTGGACAGTGCAAGGTTCAAACCTTTATTAAATATTTTTCTACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGACAGTGCAAGGTTCAAACCTTTATTAAATATTTTTCTACTCC  250

seq1  TTTCTACATACTATTTGCCCACTTGCATTTCCTTCCTTACCAAAATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATACTATTTGCCCACTTGCATTTCCTTCCTTACCAAAATGTGA  300

seq1  AAAACTGCTTCATACTTGGAAGGTCTCCATTGCTTTTTCTTCCAAATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCTTCATACTTGGAAGGTCTCCATTGCTTTTTCTTCCAAATAGC  350

seq1  TTGACCATTTACACCTGAAGCTATCCTTGCATTTGAACCTTCCAAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATTTACACCTGAAGCTATCCTTGCATTTGAACCTTCCAAAGTAG  400

seq1  ATGAGGGTTAAAATAATATGGACCAGGTCTCTGTTGAAAATTGAAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTTAAAATAATATGGACCAGGTCTCTGTTGAAAATTGAAAGAAC  450

seq1  CATATTAACTATTGACTACTAGTTAATACTATTATCATATTACACAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAACTATTGACTACTAGTTAATACTATTATCATATTACACAAAAT  500

seq1  GTTTGTTGCTTATTATTAAATTACCATTATCTGATCACTGGCCAGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGCTTATTATTAAATTACCATTATCTGATCACTGGCCAGAAAGT  550

seq1  ACAATGAGCACAAAATGCAATGAATATTAGCATTTTAACACTAATATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCACAAAATGCAATGAATATTAGCATTTTAACACTAATATCAA  600

seq1  AGTGCACCTAAACAAATACATTAGCTGCACATACATGAACACAGACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACCTAAACAAATACATTAGCTGCACATACATGAACACAGACACAT  650

seq1  GTGTACACACACCCTGTAAGCATACACATATATGAACACAGACACATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACACACCCTGTAAGCATACACATATATGAACACAGACACATGTG  700

seq1  TACACACACCCTGTAAGCATACACATATATGAACACAGACATGCACATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCCTGTAAGCATACACATATATGAACACAGACATGCACATGC  750

seq1  ACATACACAGGACAACATGTAAACCATCTCATAAGTCTGGAAATGTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAGGACAACATGTAAACCATCTCATAAGTCTGGAAATGTTACT  800

seq1  ATAAAAAATGAAGACTAAGCATTTAATAACCCTTCAAAAATATGTCACCA  850
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATGAAGACTAAGCATTTAATAACCCTTCAAAAATATGTCACCA  850

seq1  AAAAAAT-AGTAACTGAAATTTAAACCTAAGATAATTAATGGCTAGAGCC  899
      ||||||| |||||||||||||| ||||||||||| ||| |||||||||||
seq2  AAAAAATAAGTAACTGAAATTT-AACCTAAGATATTTATTGGCTAGAGCC  899

seq1  ATTTCAAAGGTAAAATGAGGGCCTCTGGCTATAACTCAGTT-GGTAGAGT  948
      ||||||||||| ||||||||| ||||||||||||||||||| ||| ||||
seq2  ATTTCAAAGGT-AAATGAGGG-CTCTGGCTATAACTCAGTTGGGTTGAGT  947

seq1  TCCTTACCCAGCAATGCTAAGTAGGATCAACTACTGGGCATGGTGACACA  998
      |||||||||||| ||||| |||| ||||||||||||||||||||||||||
seq2  TCCTTACCCAGC-ATGCTTAGTA-GATCAACTACTGGGCATGGTGACACA  995

seq1  CCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGGTGGATCTCTGGGAGTT  1048
       ||||||||| ||||||||||||||||| ||| |||||  ||| ||||||
seq2  -CTTTAATCCTAGCACTTGGGAAGCAGA-GCA-GTGGACTTCT-GGAGTT  1041

seq1  CCAGACCAATCTGGTCTACAGAGTGAGTTCCAGAACAGCCAAGGCTGTAT  1098
       ||||||| |||| ||||||||||||||||||| ||| |  | |||||||
seq2  -CAGACCATTCTGTTCTACAGAGTGAGTTCCAG-ACATC--AAGCTGTAT  1087

seq1  AAACAAGCAAACAAATGAAGTTCTAGGTTATGCTCAATTGTTCAAGGCCA  1148
      |||| ||||||| | || ||||||||||||| |  |||||||||| ||||
seq2  AAAC-AGCAAACCATTG-AGTTCTAGGTTATCCCTAATTGTTCAA-GCCA  1134

seq1  GCCTGTGATACACT-AGACCTTTTCTTTAAAAACAACAACAACAACAAAA  1197
      | ||||   ||||| | | ||||||||    ||||   ||| ||||    
seq2  GTCTGTTGAACACTAAAAACTTTTCTT----AACACACACACCAAC----  1176

seq1  AAAACCAGGTAAAATAATATACTAT-AGTACTTACTAATGTTACAAAATC  1246
      |||||| |    |||||||| | || | ||||  |  ||||| |||   |
seq2  AAAACCCG---TAATAATATCCAATGACTACT--CATATGTT-CAA---C  1217

seq1  TTAACTGTTGTAGGGTATGTTAAGCAGC  1274
      |  | || |||||||||   ||||||||
seq2  TCTAATG-TGTAGGGTAGTGTAAGCAGC  1244