BAC Information

Click to search

BAC

Clone NameB6Ng01-085F04
Chromosome12 (Build37)
Map Location 31,949,499 - 32,075,069
singlet/doubletdoublet
Overlap geneLamb1-1, Dld
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068
Downstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F04.bB6Ng01-085F04.g
ACCDH899028DH899029
length1,278999
definitionDH899028|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F04, 5' end.DH899029|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,073,805 - 32,075,069)(31,949,499 - 31,950,500)
sequence
gaattctttggtgatggagctatgcctgaagactcgttttgtttaggatt
tttgtaaaagggattgaacccaggctatgtgctaagcaagcactccacag
cttagccatatcctcaaccctacagctcattttgatggctatttcctgac
tgtatgtctgtgaaaaaaaatcataggaacaattcattaaacagtataaa
atttcatgtatatctcatattatattttgtattatatctcataaacctga
tttgatttgattgtctgtcaaagactttcactgcccctggaataggcacc
caatggtttatagaaaaggtttcctattgagcccaaggtgagccatcggc
tgcatgtacacactttctgagggtgggaagctatggaggctgcagggtgc
catgggcaagggttagcactggttgggatttcggtgttaacactcaccac
gtgtctaagcttcaagcaagcaaaaccagctctggtcatcctgtttacct
ctgggctacgcccaagtcctcaagagaaggatgcggttcctctagaatct
tcacagcaggcagggatgaaacactccaacagccgtgtgatatgggagat
aaaaccaatggcctcctaagaggcctgctgcccaaacctacacatgtgca
ctgtgctgtgtgaccccatggaatgtctctaaccctcagcaccgcattct
tagtacccacagtttaaactataagaatttagcaaagttactatttacag
tgtctgaaacataaatgctgttttataagtagttccatttttgtcttcat
ttttggtatgtgcttctgaaacttgtatctgtgtatactcaaattcagct
aaaagctgcatagtttacctagttcttcatgctggaaatcaaggtatgaa
tgtcagtcttttatcttttttttcttctgttttatttgtctagttgtttg
gttgattgattggtttttgttgttgtttgctttgttttgttttgagacaa
gatcttcaaataactcaagctgtccctggacttgagcttatggctaagat
ggcgctgaactcctgaattcaaccttctcaagcgcttgggttatgggttt
attctgttgttttctggctcaaaggatctctaatttcatcttagaacgta
tatctctatcaatttctgtctgatattcttgcataactcaaggtgccact
cacaccttcctttcaagtccatctcctgactgtaaacataaatgacaaag
tggaacctgggaagcacagccttggagc
gaattcagagctataaccccctgggtaccagagattataggtacgtcccg
aataaattcgtgcgcaaagaatgtgcagccactggtgtccttcctatgaa
ataggaagacaccacacatgtagcacccacccacgcaaagctctagctct
ttgatcctgagtcgtggtgtaaggatgcttataggagctcaagttcctaa
gagccagacaggttgaccctttttctaagggcttaacctagctcacctcc
ctctagcgctagttgccagagttcctagccttgggcacatttcgtgactc
acttcttataaacgtaaatgtataagtccgcggtaggtcctaccggcccc
ctttgccggccgatctacacacctacctccgggaccagccccgacgcatc
cctccccagcttgctccacttgggaagcgcgcccagaaacggacccgcca
gcccacgctgggaactcaagtaccaatgccctacagcttcagcagacgct
gccttaaaacaaaagaggcgcctggggaggtgggacctggacctcaaccc
ccacccctagccaacttgctgtcctccgccccctccgcccccgctctcca
tgtgcgcatgagcagagacgcctccctcggttcctccctaggcgaaactt
tctaattcccttctttgggccggtgggctgccaggagcgggttgagcgct
cgcccagccgggtgaggagaacaaagtagttaagcgacttgacccccttc
ctgggcccagcccccgcttccgtgggagcggcaggaaatggaaagggccc
ctctcctctctcccaacatttgccttttctccccgctacctctccagaaa
ggaagacccgaagaaaagacaggcagcttgcctgctgcgtcctccttccc
gtgccgcgtcccctcgtctgcgaggactggacatggggctgctccaggtg
ttcgcctttgtgtcctagtactcagtacgttgggggggaggggtgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32073805_32075069
seq2: B6Ng01-085F04.b_48_1325 (reverse)

seq1  GCTCCAAGG------TTGCCA-----CACTTTGTCATTATGGTATACAGA  39
      |||||||||      || |||     ||||||||||||   || ||||| 
seq2  GCTCCAAGGCTGTGCTTCCCAGGTTCCACTTTGTCATTTATGTTTACAG-  49

seq1  CTCAGGGAGATGGAC-TGAAAGGAAGGTGAG-TTGCCACCTGGAAGGTTT  87
       ||| |||||||||| ||||||||||||| |  || ||||| ||    ||
seq2  -TCA-GGAGATGGACTTGAAAGGAAGGTGTGAGTGGCACCTTGA---GTT  94

seq1  ATGCAAGCATA-CAG-CAGAAATGGATAG-GAGATACG-TCTAAGATGAA  133
      ||||||| ||| ||| ||||||| ||||| || ||||| |||||||||||
seq2  ATGCAAGAATATCAGACAGAAATTGATAGAGATATACGTTCTAAGATGAA  144

seq1  A-TAG-GAT-CGTTGAGCCAG-AAACAACAGTATATACCCATAACCCAAG  179
      | ||| ||| | ||||||||| ||||||||| ||| ||||||||||||||
seq2  ATTAGAGATCCTTTGAGCCAGAAAACAACAGAATAAACCCATAACCCAAG  194

seq1  CGCTTGAGAA-GTTGAAATCAGGAGTTCAGCGCCATCCTTAGCCAT-AGC  227
      |||||||||| |||||| |||||||||||||||||| ||||||||| |||
seq2  CGCTTGAGAAGGTTGAATTCAGGAGTTCAGCGCCAT-CTTAGCCATAAGC  243

seq1  TCAAGTCCAGGGACAGCTTGAGTTATGTG-AGATCTGGTCTCAAAACAAA  276
      |||||||||||||||||||||||||| || |||||| |||||||||| ||
seq2  TCAAGTCCAGGGACAGCTTGAGTTATTTGAAGATCTTGTCTCAAAAC-AA  292

seq1  AACAAAGCAAAACAACAACAAAAACCAATCAATCAACCAAACAACTAGAC  326
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGC-AAACAACAACAAAAACCAATCAATCAACCAAACAACTAGAC  341

seq1  AAATAAAAACAGAAGAAAAAAAAAGATAAAAGACTGACATTCATACCTTG  376
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAT-AAAACAGAAG-AAAAAAAAGATAAAAGACTGACATTCATACCTTG  389

seq1  ATTTCCAGCATGAAGAACTAGGTAAACTATGCAGCTTTTAGCTGAATTTG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCATGAAGAACTAGGTAAACTATGCAGCTTTTAGCTGAATTTG  439

seq1  AGTATACACAGATACAAGTTTCAGAAGCACATACCAAAAATGAAGACAAA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACACAGATACAAGTTTCAGAAGCACATACCAAAAATGAAGACAAA  489

seq1  AATGGAACTACTTATAAAACAGCATTTATGTTTCAGACACTGTAAATAGT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACTACTTATAAAACAGCATTTATGTTTCAGACACTGTAAATAGT  539

seq1  AACTTTGCTAAATTCTTATAGTTTAAACTGTGGGTACTAAGAATGCGGTG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCTAAATTCTTATAGTTTAAACTGTGGGTACTAAGAATGCGGTG  589

seq1  CTGAGGGTTAGAGACATTCCATGGGGTCACACAGCACAGTGCACATGTGT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTAGAGACATTCCATGGGGTCACACAGCACAGTGCACATGTGT  639

seq1  AGGTTTGGGCAGCAGGCCTCTTAGGAGGCCATTGGTTTTATCTCCCATAT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGGCAGCAGGCCTCTTAGGAGGCCATTGGTTTTATCTCCCATAT  689

seq1  CACACGGCTGTTGGAGTGTTTCATCCCTGCCTGCTGTGAAGATTCTAGAG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCTGTTGGAGTGTTTCATCCCTGCCTGCTGTGAAGATTCTAGAG  739

seq1  GAACCGCATCCTTCTCTTGAGGACTTGGGCGTAGCCCAGAGGTAAACAGG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGCATCCTTCTCTTGAGGACTTGGGCGTAGCCCAGAGGTAAACAGG  789

seq1  ATGACCAGAGCTGGTTTTGCTTGCTTGAAGCTTAGACACGTGGTGAGTGT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGAGCTGGTTTTGCTTGCTTGAAGCTTAGACACGTGGTGAGTGT  839

seq1  TAACACCGAAATCCCAACCAGTGCTAACCCTTGCCCATGGCACCCTGCAG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCGAAATCCCAACCAGTGCTAACCCTTGCCCATGGCACCCTGCAG  889

seq1  CCTCCATAGCTTCCCACCCTCAGAAAGTGTGTACATGCAGCCGATGGCTC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGCTTCCCACCCTCAGAAAGTGTGTACATGCAGCCGATGGCTC  939

seq1  ACCTTGGGCTCAATAGGAAACCTTTTCTATAAACCATTGGGTGCCTATTC  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGCTCAATAGGAAACCTTTTCTATAAACCATTGGGTGCCTATTC  989

seq1  CAGGGGCAGTGAAAGTCTTTGACAGACAATCAAATCAAATCAGGTTTATG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTGAAAGTCTTTGACAGACAATCAAATCAAATCAGGTTTATG  1039

seq1  AGATATAATACAAAATATAATATGAGATATACATGAAATTTTATACTGTT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAATACAAAATATAATATGAGATATACATGAAATTTTATACTGTT  1089

seq1  TAATGAATTGTTCCTATGATTTTTTTTCACAGACATACAGTCAGGAAATA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATTGTTCCTATGATTTTTTTTCACAGACATACAGTCAGGAAATA  1139

seq1  GCCATCAAAATGAGCTGTAGGGTTGAGGATATGGCTAAGCTGTGGAGTGC  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAAAATGAGCTGTAGGGTTGAGGATATGGCTAAGCTGTGGAGTGC  1189

seq1  TTGCTTAGCACATAGCCTGGGTTCAATCCCTTTTACAAAAATCCTAAACA  1226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGCACATAGCCTGGGTTCAATCCCTTTTACAAAAATCCTAAACA  1239

seq1  AAACGAGTCTTCAGGCATAGCTCCATCACCAAAGAATTC  1265
      |||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGTCTTCAGGCATAGCTCCATCACCAAAGAATTC  1278

seq1: chr12_31949499_31950500
seq2: B6Ng01-085F04.g_69_1067

seq1  GAATTCAGAGCTATAACCCCCTGGGTACCAGAGATTATAGGTACGTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTATAACCCCCTGGGTACCAGAGATTATAGGTACGTCCCG  50

seq1  AATAAATTCGTGCGCAAAGAATGTGCAGCCACTGGTGTCCTTCCTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCGTGCGCAAAGAATGTGCAGCCACTGGTGTCCTTCCTATGAA  100

seq1  ATAGGAAGACACCACACATGTAGCACCCACCCACGCAAAGCTCTAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGACACCACACATGTAGCACCCACCCACGCAAAGCTCTAGCTCT  150

seq1  TTGATCCTGAGTCGTGGTGTAAGGATGCTTATAGGAGCTCAAGTTCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTGAGTCGTGGTGTAAGGATGCTTATAGGAGCTCAAGTTCCTAA  200

seq1  GAGCCAGACAGGTTGACCCTTTTTCTAAGGGCTTAACCTAGCTCACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGACAGGTTGACCCTTTTTCTAAGGGCTTAACCTAGCTCACCTCC  250

seq1  CTCTAGCGCTAGTTGCCAGAGTTCCTAGCCTTGGGCACATTTCGTGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCGCTAGTTGCCAGAGTTCCTAGCCTTGGGCACATTTCGTGACTC  300

seq1  ACTTCTTATAAACGTAAATGTATAAGTCCGCGGTAGGTCCTACCGGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTATAAACGTAAATGTATAAGTCCGCGGTAGGTCCTACCGGCCCC  350

seq1  CTTTGCCGGCCGATCTACACACCTACCTCCGGGACCAGCCCCGACGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCGGCCGATCTACACACCTACCTCCGGGACCAGCCCCGACGCATC  400

seq1  CCTCCCCAGCTTGCTCCACTTGGGAAGCGCGCCCAGAAACGGACCCGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAGCTTGCTCCACTTGGGAAGCGCGCCCAGAAACGGACCCGCCA  450

seq1  GCCCACGCTGGGAACTCAAGTACCAATGCCCTACAGCTTCAGCAGACGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGCTGGGAACTCAAGTACCAATGCCCTACAGCTTCAGCAGACGCT  500

seq1  GCCTTAAAACAAAAGAGGCGCCTGGGGAGGTGGGACCTGGACCTCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAAAACAAAAGAGGCGCCTGGGGAGGTGGGACCTGGACCTCAACCC  550

seq1  CCACCCCTAGCCAACTTGCTGTCCTCCGCCCCCTCCGCCCCCGCTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTAGCCAACTTGCTGTCCTCCGCCCCCTCCGCCCCCGCTCTCCA  600

seq1  TGTGCGCATGAGCAGAGACGCCTCCCTCGGTTCCTCCCTAGGCGAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCATGAGCAGAGACGCCTCCCTCGGTTCCTCCCTAGGCGAAACTT  650

seq1  TCTAATTCCCTTCTTTGGGCCGGTGGGCTGCCAGGAGCGGGTTGAGCGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCCCTTCTTTGGGCCGGTGGGCTGCCAGGAGCGGGTTGAGCGCT  700

seq1  CGCCCAGCCGGGTGAGGAGAACAAAGTAGTTAAGCGACTTGACCCCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGCCGGGTGAGGAGAACAAAGTAGTTAAGCGACTTGACCCCCTTC  750

seq1  CTGGGCCCAGCCCCCGCTTCCGTGGGAGCGGCAGGAAATGG-AAGGGCCC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGGCCCAGCCCCCGCTTCCGTGGGAGCGGCAGGAAATGGAAAGGGCCC  800

seq1  CTCTCCTCTCTCCCAACATTTGCCTTTTCTCCCCGCTACCTCTCCAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCTCCCAACATTTGCCTTTTCTCCCCGCTACCTCTCCAGAAA  850

seq1  GGAAGACCCGAAGAAAAGACAGGCAGCTTGCCTGCTGCGTCCTCCTTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCCGAAGAAAAGACAGGCAGCTTGCCTGCTGCGTCCTCCTTCCC  900

seq1  GTGCCGCGTCCCCTCGTCTGCGAGGACTGGACATGGGGCTGCTCCAGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGCGTCCCCTCGTCTGCGAGGACTGGACATGGGGCTGCTCCAGGTG  950

seq1  TTCGCCTTTGGTGTCCTAGGTAACTCAGTAAGGGTTGGGGGGAGGGGTGT  999
      ||||||||| |||||||||   ||||||| | | | ||||||||||||||
seq2  TTCGCCTTT-GTGTCCTAG--TACTCAGT-ACGTTGGGGGGGAGGGGTGT  996

seq1  GCT  1002
      |||
seq2  GCT  999