BAC Information

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BAC

Clone NameB6Ng01-085K12
Chromosome12 (Build37)
Map Location 62,773,152 - 62,774,317
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085K12.bB6Ng01-085K12.g
ACCDH899271DH899272
length1,1461,271
definitionDH899271|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K12, 5' end.DH899272|Mus musculus domesticus DNA, BAC clone: B6Ng01-085K12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattaggtaaatcatgtttcctcttgtatttgacaaatgtctcc
tctcacctcatctgcttagatttatctgcaaaaacaagaccctgtttttg
cttttctgaagcaggtacaaaagaatataaatcaaaattctcattaaacg
acaatcacacacttgtagaggaataaggataacacagtagaaaaggacct
actgcagagtaaaaaggaattgaaaagtaaaaattgtcatgtggcttaag
tgtgtgaaatagcatcatctaagacaatgaagatagattaattggaaatt
gaatttgtctggctttcagagatagatttcaaccttatacggctgtaaat
gagctgatgtgttgtccttttgagataaaaatcccagaagcttgagtgat
gatacagtcttccaaaagctcgtaagggctgaggacagaaatgcatttgg
cttagctggctgatcttgatggaaagtctgttgtctgtgcttctggtttg
tgttggcttgcagaacttctagtgcagtatttcctacagagcagtgccct
gtccagaggtctgcacagatgctctctgcctttgtagctagtgattactt
tacatatagagctaggagaaattaatgctctgtgagaagcactctcagca
atgggctttcggtgagaataagtaatctgcattgttaggtattggcttga
aaataaatcaggacaagccaatttatagtaattcaattttttggctatct
tggttaacctgatgaggacccttttcctgtagtagccaccatctatcagt
gaaaggcaactgtggagtgtcgtcagataaaatattacaggtaaatggtt
gcatctctcatcaacattaaacagattttggtgggcattacatcaagaaa
aatctgggcagtctatctaaaggctactttagtgaaatcaatgactactg
tgggagaaattcagaataaagatatagtgctatacctccacaaaacttca
gtgattctaattacagactaagtaacagaattatcagctgagagattagg
aatataagaaaatttggacacctgaatttgaagtttgagtaatgcatact
ggactatgtgattggagtttggaaccaacatattctagatccttaa
gaattcagtaataaaactgagtagctccagatgcacgtaaataatgtaaa
ggttcctaaatgtgccctgaaaagaatcttttccttagcatctacaaagc
tcaagttgtggaaaaacaaatctaagaaggccctcattacatgattagct
gacttgcaaagcaaatttaattcccaaccttgaagggtgtcagcagttaa
agttcaagcaattaagaaaaaaaaaaaaaaacgtaatatcatttaggatg
cagatctatgggattacccagacaagactgaggggattgaggtcttagat
tatgagagcaatatctatagagtgtcaccaccctgaataaaggatgcacc
tctatatccataacttgtaatattgcccctacaccatgccctctgaaaat
taatctccttttgtctataaaggtgaagactttctctgaagaagatatca
gacaagactatgttgatttccttcagggctcacagcactgttcttagacc
tatgactctcaaaaacactaagcaagccctgaaaaataatgtagaaagta
tggataaagagaaggtgagacatgaccttgaagaacttaagttcttttca
aattaattcaggtagaattctggataaggtttgtagaaatagatcttaac
attatgggaaaatgctgaggaaacataactggatcaggccatgtctattt
atagagaaccatttagcagagattttcattttaatattaaagttcacaga
aattataaaaaggcacctaaagtttaattgcatgggtgaattctttgcca
aaagatgggtttttgtggagaaagatggggaggatactctcccttgtcta
gaaatgataaaagagattttaatggcttttggaaactgtaatgctggagt
ggattattgtttacaccctaatgtttcccaatggaagaatacaggtaaaa
tgttctttactcaatgcaaaatgatgactaggcatcagcacatacaaaga
actttatttttgtcctttccttggtacagaaccttaacaaggcagatgtg
ccactgttagtgttccaaatcctaggtgatttatctggtgtccaagtagt
aggaatagcctacagcatgactcccaaaggctagaagacactactgtccc
atgtggagaccggagcatgtcctgtaacgtctgactttggtgcacgctag
taatgagtagctgttttccgaatgaaatacaagattgaatttctcgcaac
cgccccgcaccatagatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62773152_62774317
seq2: B6Ng01-085K12.b_31_1176

seq1  GAATTCCATTAGGTAAATCATGTTTCCTCTTGTATTTGACAAATGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAGGTAAATCATGTTTCCTCTTGTATTTGACAAATGTCTCC  50

seq1  TCTCACCTCATCTGCTTAGATTTATCTGCAAAAACAAGACCCTGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTCATCTGCTTAGATTTATCTGCAAAAACAAGACCCTGTTTTTG  100

seq1  CTTTTCTGAAGCAGGTACAAAAGAATATAAATCAAAATTCTCATTAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGAAGCAGGTACAAAAGAATATAAATCAAAATTCTCATTAAACG  150

seq1  ACAATCACACACTTGTAGAGGAATAAGGATAACACAGTAGAAAAGGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACACACTTGTAGAGGAATAAGGATAACACAGTAGAAAAGGACCT  200

seq1  ACTGCAGAGTAAAAAGGAATTGAAAAGTAAAAATTGTCATGTGGCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAGTAAAAAGGAATTGAAAAGTAAAAATTGTCATGTGGCTTAAG  250

seq1  TGTGTGAAATAGCATCATCTAAGACAATGAAGATAGATTAATTGGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAATAGCATCATCTAAGACAATGAAGATAGATTAATTGGAAATT  300

seq1  GAATTTGTCTGGCTTTCAGAGATAGATTTCAACCTTATACGGCTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCTGGCTTTCAGAGATAGATTTCAACCTTATACGGCTGTAAAT  350

seq1  GAGCTGATGTGTTGTCCTTTTGAGATAAAAATCCCAGAAGCTTGAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGTGTTGTCCTTTTGAGATAAAAATCCCAGAAGCTTGAGTGAT  400

seq1  GATACAGTCTTCCAAAAGCTCGTAAGGGCTGAGGACAGAAATGCATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTCTTCCAAAAGCTCGTAAGGGCTGAGGACAGAAATGCATTTGG  450

seq1  CTTAGCTGGCTGATCTTGATGGAAAGTCTGTTGTCTGTGCTTCTGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGCTGATCTTGATGGAAAGTCTGTTGTCTGTGCTTCTGGTTTG  500

seq1  TGTTGGCTTGCAGAACTTCTAGTGCAGTATTTCCTACAGAGCAGTGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTTGCAGAACTTCTAGTGCAGTATTTCCTACAGAGCAGTGCCCT  550

seq1  GTCCAGAGGTCTGCACAGATGCTCTCTGCCTTTGTAGCTAGTGATTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGTCTGCACAGATGCTCTCTGCCTTTGTAGCTAGTGATTACTT  600

seq1  TACATATAGAGCTAGGAGAAATTAATGCTCTGTGAGAAGCACTCTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAGAGCTAGGAGAAATTAATGCTCTGTGAGAAGCACTCTCAGCA  650

seq1  ATGGGCTTTCGGTGAGAATAAGTAATCTGCATTGTTAGGTATTGGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTCGGTGAGAATAAGTAATCTGCATTGTTAGGTATTGGCTTGA  700

seq1  AAATAAATCAGGACAAGCCAATTTATAGTAATTCAATTTTTTGGCTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCAGGACAAGCCAATTTATAGTAATTCAATTTTTTGGCTATCT  750

seq1  TGGTTAACCTGATGAGGACCCTTTTCCTGTAGTTAGCCACCATCTATCAG  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGTTAACCTGATGAGGACCCTTTTCCTGTAG-TAGCCACCATCTATCAG  799

seq1  TG-AAGGCAACTGTGGAGTGTCGTCAGATTAAAATATTACAGGTAAATGG  849
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAAAGGCAACTGTGGAGTGTCGTCAGA-TAAAATATTACAGGTAAATGG  848

seq1  TTGCATCTCTCATCAACATTAAACAGATTTTGGTGGGCATTACATCAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCTCTCATCAACATTAAACAGATTTTGGTGGGCATTACATCAAGA  898

seq1  AAAATCTGGGCAGTCTATCTAAAGGCTACTTTTAGTGAAAATCAATGACT  949
      ||||||||||||||||||||||||||||| ||||||| ||||||||||| 
seq2  AAAATCTGGGCAGTCTATCTAAAGGCTAC-TTTAGTG-AAATCAATGAC-  945

seq1  TACTGTGGGAAGAAATTCAGAATAAAAGAATATAGTGCTATACCTCCAAC  999
      ||||||||| ||||||||||||||||   |||||||||||||||||| ||
seq2  TACTGTGGG-AGAAATTCAGAATAAA--GATATAGTGCTATACCTCC-AC  991

seq1  AAAACTTCCAGTGATTTCTAAATTAACAGACTAAGTAACAGAATTATCAG  1049
      ||||||| |||||| ||||||  | |||||||||||||||||||||||||
seq2  AAAACTT-CAGTGA-TTCTAA--TTACAGACTAAGTAACAGAATTATCAG  1037

seq1  CTGAGAAGATTAGGAATATAAGAAAATTTGGACACTTGATTTTGAAGTAT  1099
      ||||| ||||||||||||||||||||||||||||| ||| |||||||| |
seq2  CTGAG-AGATTAGGAATATAAGAAAATTTGGACACCTGAATTTGAAGTTT  1086

seq1  GAAGTTAAATTGCATACTTGACTATAGTGATT-GAGTTTGGACACAAACA  1148
      | |||   | |||||||| |||||| |||||| ||||||||| || ||||
seq2  G-AGT---AATGCATACTGGACTAT-GTGATTGGAGTTTGGA-ACCAACA  1130

seq1  TATTTCTAGATTTCTTAA  1166
      || ||||||| | |||||
seq2  TA-TTCTAGA-TCCTTAA  1146