BAC Information

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BAC

Clone NameB6Ng01-085L01
Chromosome12 (Build37)
Map Location 79,903,327 - 80,049,915
singlet/doubletdoublet
Overlap geneMpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2
Upstream geneLOC666659, EG626215, Gphn, 4921509E07Rik
Downstream gene6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085L01.bB6Ng01-085L01.g
ACCDH899297DH899298
length9351,185
definitionDH899297|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L01, 5' end.DH899298|Mus musculus domesticus DNA, BAC clone: B6Ng01-085L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,049,081 - 80,049,915)(79,903,327 - 79,904,549)
sequence
gaattcagatttagcccaagtaaaagctggccatagtaacaagagtcagg
aacttcaacattcctgcagtgagatgggggttgggacaggagaatgggtc
cagaagctaccatgtcaactggtgtggcatacatagtatcagacaataag
ataccctatctcaaacaaggtagaagatgaggaccaacccctgaggttgt
cctatgacctccacacatgatctatggcacagtttatgcattcacacact
tcacttacacacacacacacacacacacacacacacacacacacacacac
acacacacacactcagattaagaaaataaagaaccagccgggcagtggtg
gcacacacctttaatcccagcacttgggaggcagaggcaggtggatttct
gagttcaaggccagcctggtctacagagtgagttccaggacagccaaggc
tacacagagaaatcctgtctcaaaaaaaatccaaaacaaacaaacaaaca
aataaagggctggaaaattggctcagtggttaagagcactgactactctt
ccagaggtcctgagttcaattcccagcaaccacgtggtgactcacaacca
tctgtaatgagacttggtgtcctcttctgacatgcaggcaaacatgcaag
cagcatactgtatacataataaataaaacaaatctaaaaaagaaagaaag
aaaagaaaagcaaaacatttctcaaatgatgcacgaaaggaggctggaga
ccacagctcatcagttactgtatactgagcaccctgcacagcctgggtct
agcacatagtaggaactcaataaacatttgttggctgaaccagggaacca
gcaaggtgttccaatgagcccctgagggacagtgttccctacagcatttg
ctcagacctgaggtggaggctcttcatcctgctct
gaattcttttaagactaatgtatttgtccatgtggcattacttagaatca
ggctaagtttatactttttatacttttttccgttcctactcatgacttcc
atttctacaagtttaaaagacgactattatttcttccaatttataatcca
ctatggttttcattaatgcctttatgtggccttttacctttttacctttt
aatgcttttatgtggctgttttacctattttctaaattgaaatatggtgc
caggtattagtaatttatttcctggaagatttaataaatcataatgaaac
tcatcattttgtacaggaaccaaaaaaaatatttctaaagaagtgtaata
ctgcttatcaaatatttttctctgctaataatctgctaacacatcagact
acaacagaaatactcccttaaaattatgtgtctgtttgtcagtgtcttaa
ttaatagacacatgacaggagatggcttcagccttcttcacagccagaaa
caacaatttttttaagtgagggaaggacagggctgctcatttatttcttt
gagaagacgccttcagtttccagtcaacacatcatttatccgtgagtaga
caaagcattccttaagaatttaaagtgtgactagaaaggttatttttaat
gattgtatatgtaaatttgtacatatttatatgtatattgtacatttgta
atatataataataataaacattcagaaaagtggaatgatacaggaaatac
tcaggaggaacaaatcaaattttgtttaaaagcagctagaagtcttaaat
aatactgttacaagttgtaagaattttaattaagatttccttaaaatttg
atgtacattcaaacccttcctttattgcaaataaagtaattgttttgttc
tcatttatcatcaaagtaactatcttgttaacgaaatcctgaaaaaaagt
gaagttagagtagaaagagatagaccagatattctcaagctttgtatgca
acttttgttttgtatagcagttaattaatttgggtttgtgagactaggca
ataaaggaatagctgagaaactgctttctgtgtgtgacttgtgtacttgg
ataatctttgaagagcatcagtatggctacccagagtgactctgaattac
gtaaactggcatttgtgtagccttgttgtgtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80049081_80049915
seq2: B6Ng01-085L01.b_47_881 (reverse)

seq1  GCCAACAAATGTTTATTGAGTTCCTACTATGTGCTAGACCCAGGCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAATGTTTATTGAGTTCCTACTATGTGCTAGACCCAGGCTGTGC  50

seq1  AGGGTGCTCAGTATACAGTAACTGATGAGCTGTGGTCTCCAGCCTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTCAGTATACAGTAACTGATGAGCTGTGGTCTCCAGCCTCCTTT  100

seq1  CGTGCATCATTTGAGAAATGTTTTGCTTTTCTTTTCTTTCTTTCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATCATTTGAGAAATGTTTTGCTTTTCTTTTCTTTCTTTCTTTTTT  150

seq1  AGATTTGTTTTATTTATTATGTATACAGTATGCTGCTTGCATGTTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTTTTATTTATTATGTATACAGTATGCTGCTTGCATGTTTGCCT  200

seq1  GCATGTCAGAAGAGGACACCAAGTCTCATTACAGATGGTTGTGAGTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCAGAAGAGGACACCAAGTCTCATTACAGATGGTTGTGAGTCACC  250

seq1  ACGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGC  300

seq1  TCTTAACCACTGAGCCAATTTTCCAGCCCTTTATTTGTTTGTTTGTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCACTGAGCCAATTTTCCAGCCCTTTATTTGTTTGTTTGTTTGT  350

seq1  TTTGGATTTTTTTTGAGACAGGATTTCTCTGTGTAGCCTTGGCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTTTTTTGAGACAGGATTTCTCTGTGTAGCCTTGGCTGTCCTG  400

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCC  450

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCCGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCCGGCT  500

seq1  GGTTCTTTATTTTCTTAATCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTATTTTCTTAATCTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG  550

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGAAGTGTGTGAATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGAAGTGTGTGAATGCAT  600

seq1  AAACTGTGCCATAGATCATGTGTGGAGGTCATAGGACAACCTCAGGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGCCATAGATCATGTGTGGAGGTCATAGGACAACCTCAGGGGTT  650

seq1  GGTCCTCATCTTCTACCTTGTTTGAGATAGGGTATCTTATTGTCTGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCATCTTCTACCTTGTTTGAGATAGGGTATCTTATTGTCTGATAC  700

seq1  TATGTATGCCACACCAGTTGACATGGTAGCTTCTGGACCCATTCTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGCCACACCAGTTGACATGGTAGCTTCTGGACCCATTCTCCTGT  750

seq1  CCCAACCCCCATCTCACTGCAGGAATGTTGAAGTTCCTGACTCTTGTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCCCATCTCACTGCAGGAATGTTGAAGTTCCTGACTCTTGTTAC  800

seq1  TATGGCCAGCTTTTACTTGGGCTAAATCTGAATTC  835
      |||||||||||||||||||||||||||||||||||
seq2  TATGGCCAGCTTTTACTTGGGCTAAATCTGAATTC  835

seq1: chr12_79903327_79904549
seq2: B6Ng01-085L01.g_66_1250

seq1  GAATTCTTTTAAGACTAATGTATTTGTCCATGTGGCATTACTTAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGACTAATGTATTTGTCCATGTGGCATTACTTAGAATCA  50

seq1  GGCTAAGTTTATACTTTTTATACTTTTTTCCGTTCCTACTCATGACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTTTATACTTTTTATACTTTTTTCCGTTCCTACTCATGACTTCC  100

seq1  ATTTCTACAAGTTTAAAAGACGACTATTATTTCTTCCAATTTATAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACAAGTTTAAAAGACGACTATTATTTCTTCCAATTTATAATCCA  150

seq1  CTATGGTTTTCATTAATGCCTTTATGTGGCCTTTTACCTTTTTACCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTTTCATTAATGCCTTTATGTGGCCTTTTACCTTTTTACCTTTT  200

seq1  AATGCTTTTATGTGGCTGTTTTACCTATTTTCTAAATTGAAATATGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTATGTGGCTGTTTTACCTATTTTCTAAATTGAAATATGGTGC  250

seq1  CAGGTATTAGTAATTTATTTCCTGGAAGATTTAATAAATCATAATGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTAGTAATTTATTTCCTGGAAGATTTAATAAATCATAATGAAAC  300

seq1  TCATCATTTTGTACAGGAACCAAAAAAAATATTTCTAAAGAAGTGTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTTGTACAGGAACCAAAAAAAATATTTCTAAAGAAGTGTAATA  350

seq1  CTGCTTATCAAATATTTTTCTCTGCTAATAATCTGCTAACACATCAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATCAAATATTTTTCTCTGCTAATAATCTGCTAACACATCAGACT  400

seq1  ACAACAGAAATACTCCCTTAAAATTATGTGTCTGTTTGTCAGTGTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAAATACTCCCTTAAAATTATGTGTCTGTTTGTCAGTGTCTTAA  450

seq1  TTAATAGACACATGACAGGAGATGGCTTCAGCCTTCTTCACAGCCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGACACATGACAGGAGATGGCTTCAGCCTTCTTCACAGCCAGAAA  500

seq1  CAACAATTTTTTTAAGTGAGGGAAGGACAGGGCTGCTCATTTATTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTTTTTTAAGTGAGGGAAGGACAGGGCTGCTCATTTATTTCTTT  550

seq1  GAGAAGACGCCTTCAGTTTCCAGTCAACACATCATTTATCCGTGAGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACGCCTTCAGTTTCCAGTCAACACATCATTTATCCGTGAGTAGA  600

seq1  CAAAGCATTCCTTAAGAATTTAAAGTGTGACTAGAAAGGTTATTTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTCCTTAAGAATTTAAAGTGTGACTAGAAAGGTTATTTTTAAT  650

seq1  GATTGTATATGTAAATTTGTACATATTTATATGTATATTGTACATTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTATATGTAAATTTGTACATATTTATATGTATATTGTACATTTGTA  700

seq1  ATATATAATAATAATAAACATTCAGAAAAGTGGAATGATACAGGAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATAATAATAAACATTCAGAAAAGTGGAATGATACAGGAAATAC  750

seq1  TCAGGAGGAACAAATCAAATTTTGTTTAAAAGCAGCTAGAAGTCTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGAACAAATCAAATTTTGTTTAAAAGCAGCTAGAAGTCTTAAAT  800

seq1  AATACTGTTACAAGTTGTAAGAATTTTAATTAAGATTTCCTTAAAA-TTG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATACTGTTACAAGTTGTAAGAATTTTAATTAAGATTTCCTTAAAATTTG  850

seq1  ATGTACATTCAAAACCTTCCTTTATTGCAAATAAAGTAATTGTTTTGTTC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTCAAACCCTTCCTTTATTGCAAATAAAGTAATTGTTTTGTTC  900

seq1  TCATTTATCATCAAAGTAAACTATCTTGTTAACGAAATCCTGAAAAAAAA  949
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  TCATTTATCATCAAAGT-AACTATCTTGTTAACGAAATCCTG-AAAAAAA  948

seq1  GTGAAGGTTAGAGTAGAAAGAGATAGAACCAGATAATTCTCAGGCTATGT  999
      ||||| |||||||||||||||||||| ||||||| ||||||| ||| |||
seq2  GTGAA-GTTAGAGTAGAAAGAGATAG-ACCAGAT-ATTCTCAAGCTTTGT  995

seq1  ATGCCAACTTTTGTTTTGTATTAGCAGTTATATAATTTGGGGTTGTGGAG  1049
      ||| |||||||||||||||| |||||||||  ||||||||| |||| |||
seq2  ATG-CAACTTTTGTTTTGTA-TAGCAGTTAATTAATTTGGGTTTGT-GAG  1042

seq1  AACTAGGCAGAATAAAGAGAATAGGCTGGAGAAAACTGCTTTCTGTGTGT  1099
       |||||||  ||||||| ||||| ||| ||| |||||||||||  |||||
seq2  -ACTAGGC--AATAAAG-GAATA-GCT-GAG-AAACTGCTTTC--TGTGT  1083

seq1  GTGAC-TGTGTACTT-GATACACCCTTGAAGAGGCAGCAGGAAAGGGCGT  1147
      ||||| ||||||||| |||| | | ||||||| ||| |||   | |||  
seq2  GTGACTTGTGTACTTGGATA-ATCTTTGAAGA-GCATCAG--TATGGC--  1127

seq1  ACACACAGAGTGA-GCTGCTTGATAGTTACGTAGAAAACACTTGCATTTT  1196
        || ||||||||  |||      | ||||||     | ||| ||| |||
seq2  -TACCCAGAGTGACTCTG------AATTACGT-----AAACTGGCA-TTT  1164

seq1  GTGGTTAAAGCCTCTTGTTGTGTACCA  1223
      |||     |||  ||||||||||||||
seq2  GTG----TAGC--CTTGTTGTGTACCA  1185