BAC Information

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BAC

Clone NameB6Ng01-085M02
Chromosome12 (Build37)
Map Location 13,838,120 - 13,991,695
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
Downstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085M02.bB6Ng01-085M02.g
ACCDH899337DH899338
length1,2161,082
definitionDH899337|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M02, 5' end.DH899338|Mus musculus domesticus DNA, BAC clone: B6Ng01-085M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,990,503 - 13,991,695)(13,838,120 - 13,839,213)
sequence
gaattcctcagcttgttactactttttccaaagcctccactgtatgtcat
catcctttatgtctggttattttcttaaatcactcttcatcataggatgg
gggcatagtatgctgtaaatgctaaccactgatactattgttaactggaa
gttcttgagcagaactgtttcatctatttcttttagttcagtataggaca
aaaacataaatacaatagatgcttcatagagaccggcagacatgggctat
gaggtgataatcatactttgctacagttcagtttcaggacctgtgtaatt
tttacttttaactgcttatgcttagttctgtatacacatactgataccat
tagcatagcaagtagcagaataatgccttgttactgtttaccaaaattct
ttcctggcatctataaccaaagtgaaaaacagcttatcaatatccaagga
cattgttattgttgcccaaggtgactgcagccaagagactattgctgctc
ttttcttatcccttcattataagtcagatctccttctcagccattattca
gagcaactgggatttgtgattcacaatgaccagcctcactttggctcaaa
ccaactctttgttccctcactctgcgtgcctcaatttggctttttaagtt
gacaagtgcttttcacaatatgtggtgcccataaaggctctgattaatat
tgcatgagttcacaaattatgattataattagcaattgtatagtgattta
tagcttatgcagaacttgctaatttcatccccctaattatttttcaaaat
gatgctgtaacacaatttcgctgtattttctcttgaagactgtggaaatc
agggaagggaatatggcttgccaaggctacagaataaatgacagagccca
agactcaaacccatgtgttgttttttgctttggttttctccttgttgctg
gctattgctggttttttttctaatctaaattgggctagataagtcttttg
ctatgtgatgatttgtttggattaattagctaattttgacattggaatgt
tattctggtatgtgctgctcaagcaaaaacgtcttgcttggttgtctaca
tggccaacaccacctgaggcttcctttaacctctggaaatttccataacc
cttggattcgagagttatataactaaccctaccggcttcgaagtgaagaa
aaagtgaaggcaaaca
gaattctgcattttgcccatccctgagtgaacagattccagccaggtaac
tggggttatagagctaagtggggtaacagagagacctcaccttttgagag
tcatagctgcattttgaaagtgcccttcaagcatttgagtagatctttac
tggagaagttaattgtattagggagagggattatttttgagaaaggaaac
cttcaactttggactgcacaattgtgaagcaggggctttggcaactatcc
taaaaaggcgcgccgatggtggagttaataggcctttatttcagaaaagg
aaaattgaagctcacaggaggtcatttttcaggccaaaaagaaccccata
ggtactagtctttacagataatcagggaatattatcgtatatgaaatagc
atgggacgtcagaggtcagcagcagagagtctcagcggcactggggagag
cattgggatcagccttaaatatgctcagatttcagtatggaagtctgata
aattaactcacgctaggaagtctttttccatatatttcaagagcagagtc
agtaggcaggcctgtggctctgtggattcagctgtgaggcatgtgtagga
aaaaggaatataaaacaacttctttctagccatttatcccaatgcagaat
ttcaaatgagccccagctagtctcttgcatattcctgaatacatttcagg
ggacgttggaatctcttccatcatctcaatggcagtaatttgcgtttaac
attttctaaagtttcaaggaaaaaaaaaaagaagaagaaatagactgatt
ttagttagtgtcattcaaagatcacctcttaaatttcaaaacccctctta
aatttcaaagttgttcatcctatacatttgagtacagagtcttggaaata
tcagaagagaatgcaacttaattgtgaccagcgatttgtgtgtgaggttg
tgttagtggtggcagggaaaatgatgctctgtgaggaaaagtccttgcta
ggaaggaaatgagagtaagagtttgaagcgtgggtgaatgaatatgttcc
agctacaaacagttaattctcctgtcatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_13990503_13991695
seq2: B6Ng01-085M02.b_43_1258 (reverse)

seq1  TGTTT-CCTTCACTTTTTCTCTAC-TCGAGGCCG--TGGGTTAGT--TAT  44
      ||||| ||||||||||||||  || |||| ||||   ||||||||  |||
seq2  TGTTTGCCTTCACTTTTTCTTCACTTCGAAGCCGGTAGGGTTAGTTATAT  50

seq1  AACTCT-GAATC--AAGGTTATGTGGATTTTCTGAGGTTAAAGAAGGCCT  91
      |||||| |||||  | |||||||   |||| | |||||||||| | ||||
seq2  AACTCTCGAATCCAAGGGTTATGGAAATTTCCAGAGGTTAAAGGAAGCCT  100

seq1  CAG--TGTGGTTGCCAGTGAGACAACAAAGC-AGACGTCTTTGCTTGAGC  138
      |||   ||| | ||||   ||||||| |||| |||||| |||||||||||
seq2  CAGGTGGTGTTGGCCATGTAGACAACCAAGCAAGACGTTTTTGCTTGAGC  150

seq1  AGCACATACCCGAATAACATTCCCATGTCAAAATTAGCTAATTAAT-CAA  187
      |||||||||| |||||||||||| |||||||||||||||||||||| |||
seq2  AGCACATACCAGAATAACATTCCAATGTCAAAATTAGCTAATTAATCCAA  200

seq1  ACAAATCATCACATAGCAAAAGAC-TATCTAG-CCAATTTAGATTAGAAA  235
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  ACAAATCATCACATAGCAAAAGACTTATCTAGCCCAATTTAGATTAGAAA  250

seq1  AAAAA-CAGCAATAG-CAGCAACAAGGAGAAAA-CAAAGC-AAAAACAAC  281
      ||||| ||||||||| ||||||||||||||||| |||||| |||||||||
seq2  AAAAACCAGCAATAGCCAGCAACAAGGAGAAAACCAAAGCAAAAAACAAC  300

seq1  ACATGGGTTTGAGTCTT-GGCTCTGTCATTTATTCTGTAGCCTTGGCAAG  330
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATGGGTTTGAGTCTTGGGCTCTGTCATTTATTCTGTAGCCTTGGCAAG  350

seq1  CCATATTCCCTTCCCTGATTTCCACAGTCTTCAAGAGAAAATACAGCG-A  379
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATATTCCCTTCCCTGATTTCCACAGTCTTCAAGAGAAAATACAGCGAA  400

seq1  ATTGTGTTACAGCATCATTTTG-AAAATAATTAGGGGGATG-AATTAGCA  427
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  ATTGTGTTACAGCATCATTTTGAAAAATAATTAGGGGGATGAAATTAGCA  450

seq1  AGTTCTGCATAAGCTATAAATCACTATACAATTGCTAATTATAATCATAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCATAAGCTATAAATCACTATACAATTGCTAATTATAATCATAA  500

seq1  TTTGTGAACTCATGCAATATTAATCAGAGCCTTTATGGGCACCACATATT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAACTCATGCAATATTAATCAGAGCCTTTATGGGCACCACATATT  550

seq1  GTGAAAAGCACTTGTCAACTTAAAAAGCCAAATTGAGGCACGCAGAGTGA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGCACTTGTCAACTTAAAAAGCCAAATTGAGGCACGCAGAGTGA  600

seq1  GGGAACAAAGAGTTGGTTTGAGCCAAAGTGAGGCTGGTCATTGTGAATCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAAGAGTTGGTTTGAGCCAAAGTGAGGCTGGTCATTGTGAATCA  650

seq1  CAAATCCCAGTTGCTCTGAATAATGGCTGAGAAGGAGATCTGACTTATAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGTTGCTCTGAATAATGGCTGAGAAGGAGATCTGACTTATAA  700

seq1  TGAAGGGATAAGAAAAGAGCAGCAATAGTCTCTTGGCTGCAGTCACCTTG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGATAAGAAAAGAGCAGCAATAGTCTCTTGGCTGCAGTCACCTTG  750

seq1  GGCAACAATAACAATGTCCTTGGATATTGATAAGCTGTTTTTCACTTTGG  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAATAACAATGTCCTTGGATATTGATAAGCTGTTTTTCACTTTGG  800

seq1  TTATAGATGCCAGGAAAGAATTTTGGTAAACAGTAACAAGGCATTATTCT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATGCCAGGAAAGAATTTTGGTAAACAGTAACAAGGCATTATTCT  850

seq1  GCTACTTGCTATGCTAATGGTATCAGTATGTGTATACAGAACTAAGCATA  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGCTATGCTAATGGTATCAGTATGTGTATACAGAACTAAGCATA  900

seq1  AGCAGTTAAAAGTAAAAATTACACAGGTCCTGAAACTGAACTGTAGCAAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAAAGTAAAAATTACACAGGTCCTGAAACTGAACTGTAGCAAA  950

seq1  GTATGATTATCACCTCATAGCCCATGTCTGCCGGTCTCTATGAAGCATCT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTATCACCTCATAGCCCATGTCTGCCGGTCTCTATGAAGCATCT  1000

seq1  ATTGTATTTATGTTTTTGTCCTATACTGAACTAAAAGAAATAGATGAAAC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTATGTTTTTGTCCTATACTGAACTAAAAGAAATAGATGAAAC  1050

seq1  AGTTCTGCTCAAGAACTTCCAGTTAACAATAGTATCAGTGGTTAGCATTT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCTCAAGAACTTCCAGTTAACAATAGTATCAGTGGTTAGCATTT  1100

seq1  ACAGCATACTATGCCCCCATCCTATGATGAAGAGTGATTTAAGAAAATAA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATACTATGCCCCCATCCTATGATGAAGAGTGATTTAAGAAAATAA  1150

seq1  CCAGACATAAAGGATGATGACATACAGTGGAGGCTTTGGAAAAAGTAGTA  1177
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATAAAGGATGATGACATACAGTGGAGGCTTTGGAAAAAGTAGTA  1200

seq1  ACAAGCTGAGGAATTC  1193
      ||||||||||||||||
seq2  ACAAGCTGAGGAATTC  1216

seq1: chr12_13838120_13839213
seq2: B6Ng01-085M02.g_70_1151

seq1  GAATTCTGCATTTTGCCCATCCCTGAGTGAACAGATTCCAGCCAGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTTTGCCCATCCCTGAGTGAACAGATTCCAGCCAGGTAAC  50

seq1  TGGGGTTATAGAGCTAAGTGGGGTAACAGAGAGACCTCACCTTTTGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTATAGAGCTAAGTGGGGTAACAGAGAGACCTCACCTTTTGAGAG  100

seq1  TCATAGCTGCATTTTGAAAGTGCCCTTCAAGCATTTGAGTAGATCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTGCATTTTGAAAGTGCCCTTCAAGCATTTGAGTAGATCTTTAC  150

seq1  TGGAGAAGTTAATTGTATTAGGGAGAGGGATTATTTTTGAGAAAGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTTAATTGTATTAGGGAGAGGGATTATTTTTGAGAAAGGAAAC  200

seq1  CTTCAACTTTGGACTGCACAATTGTGAAGCAGGGGCTTTGGCAACTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTTGGACTGCACAATTGTGAAGCAGGGGCTTTGGCAACTATCC  250

seq1  TAAAAAGGCGCGCCGATGGTGGAGTTAATAGGCCTTTATTTCAGAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGCGCGCCGATGGTGGAGTTAATAGGCCTTTATTTCAGAAAAGG  300

seq1  AAAATTGAAGCTCACAGGAGGTCATTTTTCAGGCCAAAAAGAACCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAAGCTCACAGGAGGTCATTTTTCAGGCCAAAAAGAACCCCATA  350

seq1  GGTACTAGTCTTTACAGATAATCAGGGAATATTATCGTATATGAAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGTCTTTACAGATAATCAGGGAATATTATCGTATATGAAATAGC  400

seq1  ATGGGACGTCAGAGGTCAGCAGCAGAGAGTCTCAGCGGCACTGGGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACGTCAGAGGTCAGCAGCAGAGAGTCTCAGCGGCACTGGGGAGAG  450

seq1  CATTGGGATCAGCCTTAAATATGCTCAGATTTCAGTATGGAAGTCTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGATCAGCCTTAAATATGCTCAGATTTCAGTATGGAAGTCTGATA  500

seq1  AATTAACTCACGCTAGGAAGTCTTTTTCCATATATTTCAAGAGCAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTCACGCTAGGAAGTCTTTTTCCATATATTTCAAGAGCAGAGTC  550

seq1  AGTAGGCAGGCCTGTGGCTCTGTGGATTCAGCTGTGAGGCATGTGTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCAGGCCTGTGGCTCTGTGGATTCAGCTGTGAGGCATGTGTAGGA  600

seq1  AAAAGGAATATAAAACAACTTCTTTCTAGCCATTTATCCCAATGCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAATATAAAACAACTTCTTTCTAGCCATTTATCCCAATGCAGAAT  650

seq1  TTCAAATGAGCCCCAGCTAGTCTCTTGCATATTCCTGAATACATTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGAGCCCCAGCTAGTCTCTTGCATATTCCTGAATACATTTCAGG  700

seq1  GGACGTTGGAATCTCTTCCATCATCTCAATGGCAGTAATTTGCGTTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTGGAATCTCTTCCATCATCTCAATGGCAGTAATTTGCGTTTAAC  750

seq1  ATTTTCTAAAGTTTCAAGGAAAAAAAAAAAGAAGAAGAAAATAGACTGAT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTTCTAAAGTTTCAAGGAAAAAAAAAAAGAAGAAG-AAATAGACTGAT  799

seq1  TTTAGTTAGTGTCATTCAAAGATCACCTCTTAAATTTCAAAACCCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAGTGTCATTCAAAGATCACCTCTTAAATTTCAAAACCCCTCTT  849

seq1  AAATTTCAAAGTTGTTTCATCCTATACATTTGAGTACAGAGTCTTGGAAA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATTTCAAAGTTG-TTCATCCTATACATTTGAGTACAGAGTCTTGGAAA  898

seq1  TATCAGAAGAGAAATGCAACTTAATTGTGACCAGCGAATTTGTGTGTGAG  950
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TATCAGAAGAG-AATGCAACTTAATTGTGACCAGCG-ATTTGTGTGTGAG  946

seq1  G-TGTGTTAGT-GTGGCAGGGAAAAATGATTGCTCCTGTGAGGAAAAGTC  998
      | ||||||||| ||||||||| ||||||| |||| |||||||||||||||
seq2  GTTGTGTTAGTGGTGGCAGGG-AAAATGA-TGCT-CTGTGAGGAAAAGTC  993

seq1  CTGGCTAGGAGAGACATGGAGAGTAAAGAGGTTTGGAAGCGT-GGTG-AT  1046
      || |||||||  || || |||||| |||||  || ||||||| |||| ||
seq2  CTTGCTAGGAAGGAAAT-GAGAGT-AAGAG--TTTGAAGCGTGGGTGAAT  1039

seq1  GAATATCCTTTCCAGCTACAAACCAAAGTAAATTCTCTGTTCATGCAT  1094
      ||||||   ||||||||||||||   ||| |||||||   ||||||||
seq2  GAATAT--GTTCCAGCTACAAAC---AGTTAATTCTCCTGTCATGCAT  1082