BAC Information

Click to search

BAC

Clone NameB6Ng01-085N04
Chromosome12 (Build37)Y (Build37)
Map Location 14,970,370 - 14,971,3851,870,399 - 1,870,578
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7, LOC668492
Downstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085N04.bB6Ng01-085N04.g
ACCDH899386DH899387
length1,073432
definitionDH899386|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N04, 5' end.DH899387|Mus musculus domesticus DNA, BAC clone: B6Ng01-085N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,970,370 - 14,971,385)(1,870,399 - 1,870,578)
sequence
gaattctcttattggcagagaaaactgtcttttaaacatttgtgttatcc
cagaagtcccctataccctccccccacccaggcttgactgcaagctctgc
tccctcaggtgtgagcatgcgacaggaaaagaacagccaagaacagaaat
ttcagtaggtacagtgtgtgctggcaccttaatcttgtgtttccttgcct
ctaaaactatgagaaataaatgtttcttgtttaagccaaaaaaaaaagtg
tcaatatctgtagatgagtgctacacttagctttgaccaacaaagctact
ctttgtagtggctgagggttaaataataactgttctatgtactatgttag
gtgactattgtctgctcagtcctaaagaagacatatcacctattctgggg
cccatgaaacatcctggaaaatggggttgaaatcatgtaaggtattggat
gcgccaagctttctgcatattacacagtactgatgactatgtgtacaaac
ttacatcaaatcaaagaggcatttagtaagaggggatgagttagtgacag
agtaggactaaggaggagaagaggataatgaatggagggaatttggcgaa
tgtgtatgaattccacaaaaattcaatgtaaaatgtattaaaaaaaattt
agggcctcagcctcagcagcagcggtcgccatctgggttccgggactccg
cgggacctaggaaattagtctgaacaggttagagggtgcgccagagaacc
ggacagcttctgggacgggcggaagcacagagacgctgaggcagtaccct
ttgcaggctgcagacagcagccaccatccggaccagaggacaggtgtctg
cctggctcgggaggcggcctcagcctcagagcagcggtcgccatcttggt
tccaggactccctggaacttaggatttagtctgcacaggtgagagtctgc
acacagaagctgacagcttctgggaactgccaaagcaacacagcttctga
gagaggccctgttttgggcttcttcttcgaccaggaggaggtccaaaaac
cagatatctgcacacctttcctg
tcacctgaggaataccgaatggcagaaaagcacttgaaaaaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcaaggatgtggagaaagaggaacactcctccattgttggtgggattg
caggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaat
tggacattatgaactaaccagtaccccggagctcttgactctagctgcat
atatataaaagatggcctagtcggccatcactggaaagagaggcccattg
gacttgcaaactttatatgccccagtacaggggaacaccagggccaaaaa
gggggagtgggtgggcaggggagtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14970370_14971385
seq2: B6Ng01-085N04.b_112_1123 (reverse)

seq1  CAGGGAAGGTGTGCAGATATCTTGTTTTTGGACCTCCTCCTGGTCGAAGA  50
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGAAAGGTGTGCAGATATCTGGTTTTTGGACCTCCTCCTGGTCGAAGA  50

seq1  AGAAGGCCCAAAACAGGGCCTCTCTCAGAAGCTGTGTTGCTTTGGCAGTT  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAA-GCCCAAAACAGGGCCTCTCTCAGAAGCTGTGTTGCTTTGGCAGTT  99

seq1  CCCAGAAGCTGTCAGCTTCTGTGGTGCAGACTCTCACCTGTGCAGACTAA  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCAGAAGCTGTCAGCTTCTGT-GTGCAGACTCTCACCTGTGCAGACTAA  148

seq1  ATTCCTAAGTTCCAGGGAGTCCTGGAACCAAGATGGCGACCGCTGCTCCT  200
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  A-TCCTAAGTTCCAGGGAGTCCTGGAACCAAGATGGCGACCGCTGCT-CT  196

seq1  GAGGCTGAGGCCGCCTCCCGAGCCAGGCAGACACCTGTCCTCTGGTCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGGCCGCCTCCCGAGCCAGGCAGACACCTGTCCTCTGGTCCGG  246

seq1  ATGGTGGCCTGCTGTCTGCAGCCTGCAAAGGGTACTGCCTCAGCGTCTCT  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGG-CTGCTGTCTGCAGCCTGCAAAGGGTACTGCCTCAGCGTCTCT  295

seq1  GTGCTTCCGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCGCACCCTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCGCCCGTCCCAGAAGCTGTCCGGTTCTCTGGCGCACCCTCTAA  345

seq1  CCTGTTCAGACTAATTTCCTAGGTCCCGCGGAGTCCCGGAACCCAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCAGACTAATTTCCTAGGTCCCGCGGAGTCCCGGAACCCAGATGG  395

seq1  CGACCGCTGCTGCTGAGGCTGAGGCCCTAAATTTTTTTTAATACATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCGCTGCTGCTGAGGCTGAGGCCCTAAATTTTTTTTAATACATTTTA  445

seq1  CATTGAATTTTTGTGGAATTCATACACATTCGCCAAATTCCCTCCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTTTTGTGGAATTCATACACATTCGCCAAATTCCCTCCATTCA  495

seq1  TTATCCTCTTCTCCTCCTTAGTCCTACTCTGTCACTAACTCATCCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCTTCTCCTCCTTAGTCCTACTCTGTCACTAACTCATCCCCTCT  545

seq1  TACTAAATGCCTCTTTGATTTGATGTAAGTTTGTACACATAGTCATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATGCCTCTTTGATTTGATGTAAGTTTGTACACATAGTCATCAGT  595

seq1  ACTGTGTAATATGCAGAAAGCTTGGCGCATCCAATACCTTACATGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAATATGCAGAAAGCTTGGCGCATCCAATACCTTACATGATTTC  645

seq1  AACCCCATTTTCCAGGATGTTTCATGGGCCCCAGAATAGGTGATATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATTTTCCAGGATGTTTCATGGGCCCCAGAATAGGTGATATGTCT  695

seq1  TCTTTAGGACTGAGCAGACAATAGTCACCTAACATAGTACATAGAACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGACTGAGCAGACAATAGTCACCTAACATAGTACATAGAACAGT  745

seq1  TATTATTTAACCCTCAGCCACTACAAAGAGTAGCTTTGTTGGTCAAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAACCCTCAGCCACTACAAAGAGTAGCTTTGTTGGTCAAAGCT  795

seq1  AAGTGTAGCACTCATCTACAGATATTGACAC-TTTTTTTTTGGCTTAAAC  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTGTAGCACTCATCTACAGATATTGACACTTTTTTTTTTGGCTTAAAC  845

seq1  AAGAAACATTTATTTCTCATAGTTTTAGAGGCAAGGAAACACAAGATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATTTATTTCTCATAGTTTTAGAGGCAAGGAAACACAAGATTAA  895

seq1  GGTGCCAGCACACACTGTACCTACTGAAATTTCTGTTCTTGGCTGTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGCACACACTGTACCTACTGAAATTTCTGTTCTTGGCTGTTCTT  945

seq1  TTCCTGTCGCATGCTCACACCTGAGGGAGCAGAGCTTGCAGTCAAGCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCGCATGCTCACACCTGAGGGAGCAGAGCTTGCAGTCAAGCCTG  995

seq1  GGTGGGGGGAGGGTATA  1016
      |||||||||||||||||
seq2  GGTGGGGGGAGGGTATA  1012

seq1: chrY_1870399_1870578
seq2: B6Ng01-085N04.g_328_506

seq1  ACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCATAGG  50
      ||||||||||||||||| |||||| |||||||||||||| ||||||||  
seq2  ACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATA  50

seq1  TATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAT-AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGA  99

seq1  CATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGG  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGG  149

seq1  GGCAGTGGGTGGGTAGGGGAGTGGGGGTGG  180
      || |||||||||| ||||||||||||||||
seq2  GGGAGTGGGTGGGCAGGGGAGTGGGGGTGG  179