BAC Information

Click to search

BAC

Clone NameB6Ng01-086G01
Chromosome12 (Build37)
Map Location 59,264,458 - 59,265,541
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G01.bB6Ng01-086G01.g
ACCDH899793DH899794
length1,2171,075
definitionDH899793|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G01, 5' end.DH899794|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagtaaaggaatctcaaatgactgagaaacaaagcaatgttca
gcctccttagccatcagggaaatgcaagtcaaaactactttgagattcca
tcttatatatgtaagaatgactaagatgaaaacaaacaaaaaatcccaaa
cgaacaaacaaacaaacaaacaaagcaagagctaaacatctggcaaggat
gttaaatgagggaatactcctccattgctggtagaaatgcaaaattgtaa
agctattataaaaatcaaggtggcagttcctcagaaagttgggaatcaaa
atactttaagacctagctataccactcttgaacatataagcaaaggacac
tccatcctatcacaacgatatttcctcaacaatgttaactgtgggtttat
tcataatagacagaaattgaaaagaaaatatagtactttgacacagcgga
atattattcaactgtttaaaaaactgacagcatgaacatttcaggcacat
ggatggaagtagaaaaaaaattattttgagtgaggtaaccagtctgatcc
taagacatagggctggctgctctccacaaattgactgtggggccccattg
ctaaggacaacatgtacacaatttactgaacacagaaaagtcaagctggt
gctcacatagaccctacattctattctttttcctgtgggaagatattctg
cagactactgagagaaaaacatggataccaacccagccacaaaaatcttt
gacctacagtctatcctcctatgaacaaaacttgcaggaatagccaacca
acatttaattcgacatatggcccaccctatgagaaggaacccataccaga
tactgcttgagtaaccaagaaccagagactagatagttctgagacatagg
gtgaaaccaaacataactgatctaaagaaatttctaacatactcatagtt
tggcatcttgtccaggcatcgtcagagaggcttcctccagaagcagatgg
aaagagatgcagaaagaaagacccagagctgaaattatgaagagaaaaaa
aatagtttaaatggaggtttcatcaaatagtcacctcgagctttgagacc
ctattgaagtggcaaggatgtgaaatcagaaggtggagaacagacacaag
cctcttgatactagaagcataaggccgaattgagctcaggccaggctcat
gtcctataactacggtc
gaattcctgtgataaaacacacctgtggggctccaaggctggttcacatt
caggcatttcctcctacatacctatatttcctctagatcagtgcttctca
atgttcctaatgctgtaatccttaaatacaattcctcatgtcattgtgaa
ctccagccataaaattatctatgctgctacttcataactgtatgtctgcc
actgttatgcttaattaaatatctgctttgcaaagttcttaggcgacccc
tatgaaagggtcatttgatgcccccaaaaaaggtatttcaaaatccccaa
aggggttgcaacccacatattgaaaacccctgctctgtattatgttcctt
ctaggtgattatcaagatttttcatgtgcatatctattgcacttaatcct
ataatctgtcctccatacattgttacttatatgacctttggttgtttaca
ttttctgtatgcttaagcatttatatatctcatattgttcatattgctgt
aaccatgacagagtgaacttgtgcatgtatggacatgtacaatcaactga
aaacatttagtaagataccaaagtgcattctcgttactattctctaacat
cattagaacctacaagccattgattccatttattgtccttcctcttctca
tgacctttgtcctcatttaccttgtcagtcataactacaccatcaaactt
cttaagttccatggccttttcttagttttactttcttgactaaaccacaa
acctggctaaatcatctgatcgcctactccatttctctatgctaaaaaaa
ttaaacacataattagacaaattaatttatttttagatttataataatct
tttcagcgaagccctttacatggctgggtacctacactcttctagatcct
ggcaattgtcttttctatcttgttagaaagagatgctgagatagtaattt
cactatttccccatgtcccgaacctcctaaagtacagcccattctcattg
tcagctgaaggccacattaacagccagaggaaattgagcattagaaagga
ttctacaactccctctcatcaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59264458_59265541
seq2: B6Ng01-086G01.g_66_1140

seq1  GAATTCCTGTGATAAAACACACCTGTGGGGCTCCAAGGCTGGTTCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGATAAAACACACCTGTGGGGCTCCAAGGCTGGTTCACATT  50

seq1  CAGGCATTTCCTCCTACATACCTATATTTCCTCTAGATCAGTGCTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTCCTCCTACATACCTATATTTCCTCTAGATCAGTGCTTCTCA  100

seq1  ATGTTCCTAATGCTGTAATCCTTAAATACAATTCCTCATGTCATTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTAATGCTGTAATCCTTAAATACAATTCCTCATGTCATTGTGAA  150

seq1  CTCCAGCCATAAAATTATCTATGCTGCTACTTCATAACTGTATGTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATAAAATTATCTATGCTGCTACTTCATAACTGTATGTCTGCC  200

seq1  ACTGTTATGCTTAATTAAATATCTGCTTTGCAAAGTTCTTAGGCGACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATGCTTAATTAAATATCTGCTTTGCAAAGTTCTTAGGCGACCCC  250

seq1  TATGAAAGGGTCATTTGATGCCCCCAAAAAAGGTATTTCAAAATCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGGTCATTTGATGCCCCCAAAAAAGGTATTTCAAAATCCCCAA  300

seq1  AGGGGTTGCAACCCACATATTGAAAACCCCTGCTCTGTATTATGTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGCAACCCACATATTGAAAACCCCTGCTCTGTATTATGTTCCTT  350

seq1  CTAGGTGATTATCAAGATTTTTCATGTGCATATCTATTGCACTTAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGATTATCAAGATTTTTCATGTGCATATCTATTGCACTTAATCCT  400

seq1  ATAATCTGTCCTCCATACATTGTTACTTATATGACCTTTGGTTGTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGTCCTCCATACATTGTTACTTATATGACCTTTGGTTGTTTACA  450

seq1  TTTTCTGTATGCTTAAGCATTTATATATCTCATATTGTTCATATTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATGCTTAAGCATTTATATATCTCATATTGTTCATATTGCTGT  500

seq1  AACCATGACAGAGTGAACTTGTGCATGTATGGACATGTACAATCAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGACAGAGTGAACTTGTGCATGTATGGACATGTACAATCAACTGA  550

seq1  AAACATTTAGTAAGATACCAAAGTGCATTCTCGTTACTATTCTCTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTAGTAAGATACCAAAGTGCATTCTCGTTACTATTCTCTAACAT  600

seq1  CATTAGAACCTACAAGCCATTGATTCCATTTATTGTCCTTCCTCTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAACCTACAAGCCATTGATTCCATTTATTGTCCTTCCTCTTCTCA  650

seq1  TGACCTTTGTCCTCATTTACCTTGTCAGTCATAACTACACCATCAAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGTCCTCATTTACCTTGTCAGTCATAACTACACCATCAAACTT  700

seq1  CTTAAGTTCCATGGCCTTTTCTTAGTTTTACTTTCTTGACTAAACCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTCCATGGCCTTTTCTTAGTTTTACTTTCTTGACTAAACCACAA  750

seq1  ACCTGGCTAAATCATCTGATCGCCTACTCCATTTCTCTATGCTAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTAAATCATCTGATCGCCTACTCCATTTCTCTATGCTAAAAAAA  800

seq1  TTAAACACATAATTAGACAAATTAATTTATTTTTAGATTTATAATAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACATAATTAGACAAATTAATTTATTTTTAGATTTATAATAATCT  850

seq1  TTTCAGCGAAGCCCTTTACATGGCTGGGTACCTACACTCTTCTAGATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCGAAGCCCTTTACATGGCTGGGTACCTACACTCTTCTAGATCCT  900

seq1  GGCAATTGTCTTTTCTATCTTGTTAGAAAAGAGATGCTGAGATAGTAATT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCAATTGTCTTTTCTATCTTGTTAG-AAAGAGATGCTGAGATAGTAATT  949

seq1  TCACTATTTCCCCATGTTCCCGAACCTCCTAAAAGTACAGCCCATTCTCA  1000
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TCACTATTTCCCCATG-TCCCGAACCTCCT-AAAGTACAGCCCATTCTCA  997

seq1  TTGTCAGCTGAAGGCCACATTAACAGCCAGAGGAAATTGAAGCATTTAAG  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||  ||
seq2  TTGTCAGCTGAAGGCCACATTAACAGCCAGAGGAAATTG-AGCATT--AG  1044

seq1  AAAGGATTTCTACAAACTCCCTCTCATCCAACAT  1084
      |||||| |||||| ||||||||||||| ||||||
seq2  AAAGGA-TTCTAC-AACTCCCTCTCAT-CAACAT  1075