BAC Information

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BAC

Clone NameB6Ng01-086J20
Chromosome2 (Build37)12 (Build37)
Map Location 142,776,566 - 142,777,69131,361,976 - 31,362,866
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086J20.bB6Ng01-086J20.g
ACCDH899963DH899964
length6721,032
definitionDH899963|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J20, 5' end.DH899964|Mus musculus domesticus DNA, BAC clone: B6Ng01-086J20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,566 - 142,777,691)(31,361,976 - 31,362,866)
sequence
gaattctttgttcagttctgagccccatttttaatggggttgttagattt
tctgaagtccaccttcttgagttctttatatatgttggatattagccccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttgttgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacatgccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttctttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtggaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtttctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagactttttgct
gaattctcagtttttctctcagtgtgcatagtaggccaacatcttgaagt
aagttttcatggtttcccctgaagcatatatgcattccatatcttcaaca
tcatccccagtaattaaaaaatgagtatgtatatatgtacatatatgtgt
gagagagaaaatgtgtgtgttagacaaagacagacagacatgcaggcagg
cagacagacagagacagagacagagacagagacagaggagtgatctgaac
ctgatatttttcttaaaagctttcagcccgtgaaagcgaacggaaggtag
taatgattgcagaaagatgatcttttagaaaagcacatcccatagctgga
tgatagctggaatttattgtttgtcccctgattctcagtatcaacttaca
gaacctttgcagcaacttttgaaataaaaaatcagcataaattctcctgc
tttattctttttcaacatcaatttggattctgagtcatttccatttccat
atagattttaaaatcaatttgtcaaattctttaaaaaaaataaaagcccg
ttagaattttgagactttattaaattttccaattaccctagagaatatca
catcatcaacattattaaatttcccaagccatgagtgttagggatccttt
tatatatttgtattccctgtaattttcctcaacaatgttcagtatctgtt
tattacttaaatcttgtagttgtaaaattaagtgtttcattaattttgta
ctatctttatagagttcttaaaatttccactttgttaatttatttcttgt
tattaccatatttgtatattggtatatgaagattgtgtcatgaaatctaa
tttttaatttatcatagtttatttttagaattttatttttttaagatcag
attatttgcaaataaacatatctccctctggtttttgtttgttgtttctt
ttgacctgtattactatttatcagaaacagtattaaatgctgtcattgtt
tttatctttgatgatgtgtcatatgatttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776566_142777691
seq2: B6Ng01-086J20.b_55_719 (reverse)

seq1  AGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGC  50

seq1  CTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTAC  100

seq1  TGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGAAACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGA  150

seq1  AATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGAACCCACACACCTATGGTCACTTGATCTTCCACAAGGGAGCTAAAA  200

seq1  CCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAAC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAAC  250

seq1  TGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCTCCTTG  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTG  300

seq1  TACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGA  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTAAGGTCAAATCTAAGTGGATCAAAGAACTTCACATAAAACCAGAGA  350

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC  400

seq1  ACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATC  450
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCATGTGCTGTAAGATC  450

seq1  GAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  500

seq1  AAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATC  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGACACCGTCAACAAGACAAAAAGACCACCAACAGATTGGGAAAGGATC  550

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTACCTATCCTAAATCAGATAGGGGGCTAATATCCAACATATATAAAGA  600

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  650
      ||||||||||||||||||||||||||| || ||||||||| |||||||||
seq2  ACTCAAGAAGGTGGACTTCAGAAAATCTAACAACCCCATT-AAAAATGGG  649

seq1  GCTCACAA---AACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTG  697
      ||||| ||   ||| |                                  
seq2  GCTCAGAACTGAACAA----------------------------------  665

seq1  GTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCAT  747
                                                        
seq2  --------------------------------------------------  665

seq1  ACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCAC  797
                                                        
seq2  --------------------------------------------------  665

seq1  ATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCT  847
                                                        
seq2  --------------------------------------------------  665

seq1  TGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGCTT  897
                                                        
seq2  --------------------------------------------------  665

seq1  GTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGT  947
                                                        
seq2  --------------------------------------------------  665

seq1  TTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACAGA  997
                                                        
seq2  --------------------------------------------------  665

seq1  CTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA  1047
                                                        
seq2  --------------------------------------------------  665

seq1  ACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACCCC  1097
                                                        
seq2  --------------------------------------------------  665

seq1  ATTAAAAAATGGGGCTCAGAACTGAACAA  1126
                                   
seq2  -----------------------------  665

seq1: chr12_31361976_31362866
seq2: B6Ng01-086J20.g_65_955

seq1  GAATTCTCAGTTTTTCTCTCAGTGTGCATAGTAGGCCAACATCTTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTTTCTCTCAGTGTGCATAGTAGGCCAACATCTTGAAGT  50

seq1  AAGTTTTCATGGTTTCCCCTGAAGCATATATGCATTCCATATCTTCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCATGGTTTCCCCTGAAGCATATATGCATTCCATATCTTCAACA  100

seq1  TCATCCCCAGTAATTAAAAAATGAGTATGTATATATGTACATATATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCAGTAATTAAAAAATGAGTATGTATATATGTACATATATGTGT  150

seq1  GAGAGAGAAAATGTGTGTGTTAGACAAAGACAGACAGACATGCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAATGTGTGTGTTAGACAAAGACAGACAGACATGCAGGCAGG  200

seq1  CAGACAGACAGAGACAGAGACAGAGACAGAGACAGAGGAGTGATCTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGAGACAGAGACAGAGACAGAGACAGAGGAGTGATCTGAAC  250

seq1  CTGATATTTTTCTTAAAAGCTTTCAGCCCGTGAAAGCGAACGGAAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTTTCTTAAAAGCTTTCAGCCCGTGAAAGCGAACGGAAGGTAG  300

seq1  TAATGATTGCAGAAAGATGATCTTTTAGAAAAGCACATCCCATAGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTGCAGAAAGATGATCTTTTAGAAAAGCACATCCCATAGCTGGA  350

seq1  TGATAGCTGGAATTTATTGTTTGTCCCCTGATTCTCAGTATCAACTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGGAATTTATTGTTTGTCCCCTGATTCTCAGTATCAACTTACA  400

seq1  GAACCTTTGCAGCAACTTTTGAAATAAAAAATCAGCATAAATTCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGCAGCAACTTTTGAAATAAAAAATCAGCATAAATTCTCCTGC  450

seq1  TTTATTCTTTTTCAACATCAATTTGGATTCTGAGTCATTTCCATTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTTCAACATCAATTTGGATTCTGAGTCATTTCCATTTCCAT  500

seq1  ATAGATTTTAAAATCAATTTGTCAAATTCTTTAAAAAAAATAAAAGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTAAAATCAATTTGTCAAATTCTTTAAAAAAAATAAAAGCCCG  550

seq1  TTAGAATTTTGAGACTTTATTAAATTTTCCAATTACCCTAGAGAATATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTGAGACTTTATTAAATTTTCCAATTACCCTAGAGAATATCA  600

seq1  CATCATCAACATTATTAAATTTCCCAAGCCATGAGTGTTAGGGATCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAACATTATTAAATTTCCCAAGCCATGAGTGTTAGGGATCCTTT  650

seq1  TATATATTTGTATTCCCTGTAATTTTCCTCAACAATGTTCAGTATCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTATTCCCTGTAATTTTCCTCAACAATGTTCAGTATCTGTT  700

seq1  TATTACTTAAATCTTGTAGTTGTAAAATTAAGTGTTTCATTAATTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTAAATCTTGTAGTTGTAAAATTAAGTGTTTCATTAATTTTGTA  750

seq1  CTATCTTTATAGAGTTCTTAAAATTTCCACTTTGTTAATTTATTTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTATAGAGTTCTTAAAATTTCCACTTTGTTAATTTATTTCTTGT  800

seq1  TATTACCATATTTGTATATTGGTATATGAAGATTGTGTCATGAAATCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCATATTTGTATATTGGTATATGAAGATTGTGTCATGAAATCTAA  850

seq1  TTTTTAATTTATCATAGTTTATTTTTAGAATTTTATTTTTT  891
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTATCATAGTTTATTTTTAGAATTTTATTTTTT  891