BAC Information

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BAC

Clone NameB6Ng01-087E13
Chromosome12 (Build37)
Map Location 10,602,094 - 10,744,870
singlet/doubletdoublet
Overlap geneLOC238074
Upstream geneLOC382567, Nt5c1b, Rdh14
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087E13.bB6Ng01-087E13.g
ACCDH900455DH900456
length1,1461,109
definitionDH900455|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E13, 5' end.DH900456|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,602,094 - 10,603,258)(10,743,752 - 10,744,870)
sequence
gaattcagtcccagtgcccatatatggtggctcacatctgcctataacat
tcagcaagaatgcaaatagacttgtatatacacacacacacacacacaca
cacacacacactcacatgcacacagataaataacaataaaataaatcctt
tttaaaattaaaatgtatagtaagtagagtgtaaaaatgctacactccta
gctatcaaagcaagaaatttggtgaaccatgagatataactgattatcat
cttggaaaatgaaaaaaaataagaaatggctgtttctgataagtgttgaa
gtataaattagtaaatttttctagaggagaatttggcaatatgtgtcaaa
acatgtcatcggaatcttcttgacattcataggatgtcagataacttgac
aaaatgtacaaagaaatatgcagaaaatatccactatttatttaatattt
atcagtccatgtataacaataacagaaactaaaaatatttatctacaata
gaacattgataaataaaattttaaaataaatatatctaagcaacttctgt
attttattctcatatgagttttaaaacttgggcccattgagaaatttacc
catgagtctagattgacagatacttatttatagtcttaatatctggatag
accctcagggtttgtacttatgcctcttttgttttcctgatcaatccaat
taattccacatatatatacatatatacatatgtgtgtgtgtgtatgcaca
atatatttatgttgattttttgagacaggacttctctgtatagccctgcc
tatactggaactcactctctagaccaggctggcctgaaactcagagatca
ttaatactatttaaatgacatttgctttcattatttcccttttcaagact
tctgttctccacttcttggcttctcttccctcacgcactttctttcttcc
tagttgcttgggatagttttcttaccagtctgagttcttacagtttgggc
cttccctcttgttgatacatgtactctttctttgatcacagctacatctt
gcaacgtcatctgtggaaatctgcagctccatgtgaagctgccatctcgt
gatgaatggtgtggtgtggctgccgtttccggagcatgtcaaccaa
gaattcagcacagcgacacactattggcttattcaaacattaacagaaag
aacatagggcatcaggactttcttcctgtgggcttatctttgttcacata
gcaaccagttgatgtatgactttacccggcgccaaggggcaatagacaga
ggggagattctggccagatggtgttgacttagataatatagccctgctgg
tccttgcatacctttttatctttacagtcaagatgttcttaggaatgcct
taacaatagccctgccctggcacgcctgggggctgttctgctttgttctc
agtccaaggccggggccatggactcctaaactcacaagttacaatatttt
atcttccttcagcatctctatggtttggttagtgtgattccatttgttca
ggaatacattatctatttcccctgttaatgttctctcttctcacttgttt
atttgtatcactgagctttttatttctttcggtcctctctgtggtccaaa
gaagaggaatgtacttagcctaaccctggtccttctctggacttttgttt
ggcttccagtaggattgttatattaccaaaagcacagtgatgtaaagatt
atagatttttctcaagtccaaggggttatctgagaaagttactagatgca
aagaaatgcacttgataccactgagaaggggatttaggatgacatgtaat
tttagtcactttaaatttctagtgaatggccagacaaataatgactaaat
gtaataacaaaacaaaacaaaagtcccccagaaaagaaataaacaagcaa
aatagtgtcctaatttatagtttctagaaatatataaaaatttgttaaac
aaaaggccacggttagctagtaacattgtggaagtcatgcttttgggtcc
tgatagtatgctgaccccatatttattgagttacatttattacactgagt
atgcacaataaacgtacagaattcttctctttctctacatgtagatggtc
atactgtagcatttcccgaggaccagaagcagctagtggtggggtcagtg
agaagttctagaaggaactgatcgcttagcagctgttcctcagaagatgg
aggcaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10602094_10603258
seq2: B6Ng01-087E13.b_49_1194

seq1  GAATTCAGTCCCAGTGCCCATATATGGTGGCTCACATCTGCCTATAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCAGTGCCCATATATGGTGGCTCACATCTGCCTATAACAT  50

seq1  TCAGCAAGAATGCAAATAGACTTGTATATACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAATGCAAATAGACTTGTATATACACACACACACACACACACA  100

seq1  CACACACACACTCACATGCACACAGATAAATAACAATAAAATAAATCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTCACATGCACACAGATAAATAACAATAAAATAAATCCTT  150

seq1  TTTAAAATTAAAATGTATAGTAAGTAGAGTGTAAAAATGCTACACTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTAAAATGTATAGTAAGTAGAGTGTAAAAATGCTACACTCCTA  200

seq1  GCTATCAAAGCAAGAAATTTGGTGAACCATGAGATATAACTGATTATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAAGCAAGAAATTTGGTGAACCATGAGATATAACTGATTATCAT  250

seq1  CTTGGAAAATGAAAAAAAATAAGAAATGGCTGTTTCTGATAAGTGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAATGAAAAAAAATAAGAAATGGCTGTTTCTGATAAGTGTTGAA  300

seq1  GTATAAATTAGTAAATTTTTCTAGAGGAGAATTTGGCAATATGTGTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATTAGTAAATTTTTCTAGAGGAGAATTTGGCAATATGTGTCAAA  350

seq1  ACATGTCATCGGAATCTTCTTGACATTCATAGGATGTCAGATAACTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCATCGGAATCTTCTTGACATTCATAGGATGTCAGATAACTTGAC  400

seq1  AAAATGTACAAAGAAATATGCAGAAAATATCCACTATTTATTTAATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTACAAAGAAATATGCAGAAAATATCCACTATTTATTTAATATTT  450

seq1  ATCAGTCCATGTATAACAATAACAGAAACTAAAAATATTTATCTACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCATGTATAACAATAACAGAAACTAAAAATATTTATCTACAATA  500

seq1  GAACATTGATAAATAAAATTTTAAAATAAATATATCTAAGCAACTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGATAAATAAAATTTTAAAATAAATATATCTAAGCAACTTCTGT  550

seq1  ATTTTATTCTCATATGAGTTTTAAAACTTGGGCCCATTGAGAAATTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCTCATATGAGTTTTAAAACTTGGGCCCATTGAGAAATTTACC  600

seq1  CATGAGTCTAGATTGACAGATACTTATTTATAGTCTTAATATCTGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCTAGATTGACAGATACTTATTTATAGTCTTAATATCTGGATAG  650

seq1  ACCCTCAGGGTTTGTACTTATGCCTCTTTTGTTTTCCTGATCAATCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGGTTTGTACTTATGCCTCTTTTGTTTTCCTGATCAATCCAAT  700

seq1  TAATTCCACATATATATACATATATACATATGTGTGTGTGTGTATGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACATATATATACATATATACATATGTGTGTGTGTGTATGCACA  750

seq1  ATATATTTATGTTGATTTTTTGAGACAGGACTTCTCTGTATAGCCCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTATGTTGATTTTTTGAGACAGGACTTCTCTGTATAGCCCTGCC  800

seq1  TATACTGGAACTCACTCTCTAGACCAGGCTGGCCTGAAACTCAGAGATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGAACTCACTCTCTAGACCAGGCTGGCCTGAAACTCAGAGATCA  850

seq1  TTAATACTATTTAAATGACATTTGCTTTCATTATTTCCCTTTTCAAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATTTAAATGACATTTGCTTTCATTATTTCCCTTTTCAAGACT  900

seq1  TCTGTTCTCCACTTCTTTGGCTTCTCTTTCCCTCACGCACTTTCTTTCTT  950
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TCTGTTCTCCACTTC-TTGGCTTCTC-TTCCCTCACGCACTTTCTTTCTT  948

seq1  CCTAGTTGCTTTGGGATTAGTTTTCTTACCAGTTCTGAGTTCTTACAGTT  1000
      ||||||||| |||||| ||||||||||||||| |||||||||||||||||
seq2  CCTAGTTGC-TTGGGA-TAGTTTTCTTACCAG-TCTGAGTTCTTACAGTT  995

seq1  TGGGCCTTCACTCTTGTTTTGATACATTGTACTCTTTCCTTTTGATCACA  1050
      ||||||||| ||||||  |||||||| |||||||||||  ||||||||| 
seq2  TGGGCCTTCCCTCTTG--TTGATACA-TGTACTCTTTC--TTTGATCAC-  1039

seq1  AGCTTACAATCTTTGCAACGTCATCTGTGGGAATTCTGCAAGGCT-CATG  1099
      ||| ||| ||| |||||||||||||||| |||| ||||||  ||| ||||
seq2  AGC-TAC-ATC-TTGCAACGTCATCTGT-GGAAATCTGCA--GCTCCATG  1083

seq1  TTGAAGCTGCCATCTCGTGGATG-ATGGTGTGTGTTGGCTGCCGTTTTCT  1148
       ||||||||||||||||| |||| ||||||||   ||||||||| |||| 
seq2  -TGAAGCTGCCATCTCGT-GATGAATGGTGTGGTGTGGCTGCCG-TTTCC  1130

seq1  GGAGCAATGTCAACCAA  1165
      ||||| |||||||||||
seq2  GGAGC-ATGTCAACCAA  1146

seq1: chr12_10743752_10744870
seq2: B6Ng01-087E13.g_69_1177 (reverse)

seq1  ATCTCTGCCTCCTATCTCTGGAGGAACAGCCTGGCTAAGACGATCAGTTC  50
      |||| ||||||| ||||   ||||||||||   |||||| ||||||||||
seq2  ATCT-TGCCTCC-ATCTTCTGAGGAACAGC--TGCTAAG-CGATCAGTTC  45

seq1  CTTCTAGGACTTTCTCACTGACCCCACCACTTAGCTGCTTCTGGTCCTCG  100
      ||||||| || ||||||||||||||||||| |||||||||||||||||||
seq2  CTTCTAGAAC-TTCTCACTGACCCCACCAC-TAGCTGCTTCTGGTCCTCG  93

seq1  GGAAATGCTACAGTATGACCATCTACATGGTAGAG-AAGAGAAGAATTCT  149
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  GGAAATGCTACAGTATGACCATCTACAT-GTAGAGAAAGAGAAGAATTCT  142

seq1  GTACGTTTATTGTGCATACTCAGTTGTTAATAAATGTAAACTCAATAAAT  199
      ||||||||||||||||||||||||   |||||||||| ||||||||||||
seq2  GTACGTTTATTGTGCATACTCAGT--GTAATAAATGT-AACTCAATAAAT  189

seq1  ATGGGGTCAGCATACTATCAGGACCCAAAAGCATGACTTCCACAATGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCAGCATACTATCAGGACCCAAAAGCATGACTTCCACAATGTTA  239

seq1  CTAGCTAACCGTGGCCTTTTGTTTAACAAATTTTTATATATTTCTAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAACCGTGGCCTTTTGTTTAACAAATTTTTATATATTTCTAGAAA  289

seq1  CTATAAATTAGGACACTATTTTGCTTGTTTATTTCTTTTCTGGGGGACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATTAGGACACTATTTTGCTTGTTTATTTCTTTTCTGGGGGACTT  339

seq1  TTGTTTTGTTTTGTTATTACATTTAGTCATTATTTGTCTGGCCATTCACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTATTACATTTAGTCATTATTTGTCTGGCCATTCACT  389

seq1  AGAAATTTAAAGTGACTAAAATTACATGTCATCCTAAATCCCCTTCTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAAAGTGACTAAAATTACATGTCATCCTAAATCCCCTTCTCAG  439

seq1  TGGTATCAAGTGCATTTCTTTGCATCTAGTAACTTTCTCAGATAACCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAAGTGCATTTCTTTGCATCTAGTAACTTTCTCAGATAACCCCT  489

seq1  TGGACTTGAGAAAAATCTATAATCTTTACATCACTGTGCTTTTGGTAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGAGAAAAATCTATAATCTTTACATCACTGTGCTTTTGGTAATA  539

seq1  TAACAATCCTACTGGAAGCCAAACAAAAGTCCAGAGAAGGACCAGGGTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCCTACTGGAAGCCAAACAAAAGTCCAGAGAAGGACCAGGGTTA  589

seq1  GGCTAAGTACATTCCTCTTCTTTGGACCACAGAGAGGACCGAAAGAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGTACATTCCTCTTCTTTGGACCACAGAGAGGACCGAAAGAAATA  639

seq1  AAAAGCTCAGTGATACAAATAAACAAGTGAGAAGAGAGAACATTAACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAGTGATACAAATAAACAAGTGAGAAGAGAGAACATTAACAGG  689

seq1  GGAAATAGATAATGTATTCCTGAACAAATGGAATCACACTAACCAAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGATAATGTATTCCTGAACAAATGGAATCACACTAACCAAACCA  739

seq1  TAGAGATGCTGAAGGAAGATAAAATATTGTAACTTGTGAGTTTAGGAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCTGAAGGAAGATAAAATATTGTAACTTGTGAGTTTAGGAGTC  789

seq1  CATGGCCCCGGCCTTGGACTGAGAACAAAGCAGAACAGCCCCCAGGCGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCCCGGCCTTGGACTGAGAACAAAGCAGAACAGCCCCCAGGCGTG  839

seq1  CCAGGGCAGGGCTATTGTTAAGGCATTCCTAAGAACATCTTGACTGTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGGGCTATTGTTAAGGCATTCCTAAGAACATCTTGACTGTAAA  889

seq1  GATAAAAAGGTATGCAAGGACCAGCAGGGCTATATTATCTAAGTCAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAAGGTATGCAAGGACCAGCAGGGCTATATTATCTAAGTCAACAC  939

seq1  CATCTGGCCAGAATCTCCCCTCTGTCTATTGCCCCTTGGCGCCGGGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCCAGAATCTCCCCTCTGTCTATTGCCCCTTGGCGCCGGGTAAA  989

seq1  GTCATACATCAACTGGTTGCTATGTGAACAAAGATAAGCCCACAGGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATACATCAACTGGTTGCTATGTGAACAAAGATAAGCCCACAGGAAGA  1039

seq1  AAGTCCTGATGCCCTATGTTCTTTCTGTTAATGTTTGAATAAGCCAATAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGATGCCCTATGTTCTTTCTGTTAATGTTTGAATAAGCCAATAG  1089

seq1  TGTGTCGCTGTGCTGAATTC  1119
      ||||||||||||||||||||
seq2  TGTGTCGCTGTGCTGAATTC  1109