BAC Information

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BAC

Clone NameB6Ng01-087E20
Chromosome12 (Build37)
Map Location 119,551,792 - 119,552,952
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087E20.bB6Ng01-087E20.g
ACCDH900468DH900469
length1,2361,154
definitionDH900468|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E20, 5' end.DH900469|Mus musculus domesticus DNA, BAC clone: B6Ng01-087E20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttgattcaaataattttaggaagaaagttttttacatgg
ttttagttgttttgcctaaaagatgtaataaaattagaatcaggaataga
atttaccccctcctcataaagtaaaggctacataataaagaatacaatga
gctttcataattacactaaaaagaattatagacctgggacaaatttgtgt
tcaaagaaaaacactcaggtccaaggatgaagccacaggtgtgcactatg
ataagacaaggccatttaaaaactgttgctttgtttagcaaattgtatct
tatatcttgggtattctaagtttctgggctaatatacacttatcagtgag
tacatattgtgtgagttcttttgtgattgggttacctcactcaggatgat
gccctccaggtccatccatttgcctaggaatttcataaattcattgtttt
taatagctgagtactactccattgtgtagatgtaccacattttctatatc
cattcctctgttgaggggcatctgggttctttccagcttctggctattat
aaataaggctgctatgaacatagtggagcatgtgtccttcttaacagttg
gaacatcttctggatatatgcccaggagaggcattgcgggatcctccggt
agtactatgtccaattttctgaggaaccgccagactgatttccagagtgg
ttgtaccagcttgcaatcccaccaacaatggaggagtgttcctctttctt
cacatccttgccagcatctgctgtcacctgaatttttgatcctagccatt
ctgactggtgtgaggtggaatctcagggttgttttgatttgcatttccct
gatgattaaagatgttgaacattttttttcaagtgcttctcagcccttcg
gtattcctcagttgagaattctttgtttagctctgtaccccatttttaat
gagttatttgaatttctggagttcagcatcttgagcaatcccaccaacat
ggagatacatttgctaacacatgaaactcaaaaagaacgagacaaagtgt
ggacactttgccctctagattggaacaaacaccatgaaggagtacagaga
accaagtgactgaacgaagatggaccattctaggactgcattcggatcat
ccataatcagccccacctacattgcaactaggacagattgtctagacgag
taataagtcgtgctctcttggagacatcgatacatg
gaattccactgtgcttctcggggtttttggagggacgcatcccactctgt
gacactgctagtaaagcatctggtgcctgatgaagcccttgttccttgca
ggctgttaattctgtgacatttccaaatttactgtctgatgttctttctg
atgccacctcccagtctacttttatcactgagccacagagctgaagctag
cctgcttgccttttcacctcaagggacagactgtagtctcaatgctgcca
cttagcttgtgtgttattttaggcaaacctttcagcctctttggggtgct
gtaaaatcaaggagtaaacatctgcacaagtgctttgtaaacagtatgct
tgtttcaccctgagcaaggaactgtggctgagaacaggagacaagtttaa
ttggttccattttgaaaatcttaccctttagataatgcactttagaaaat
gggtaactaactctctgtggttggatttaccacgttatctcattttgttt
ggttggtttgtttttctcctaagtatgcatgtgacagagagtctttctga
gccagtgagactcttctttctctcatctgtaaattgggttggtctattga
acagggaacctcataaagtcatacagtcttcatgatttaaagtttgtttc
tcagttggcagaaaggagctctgtagggaatggtaatacaattaggatgc
taagtgctaggggagaagcacccaggtcaggaagccttcctggcagattc
agagaaaagctctagaagcaggttaacatggatctcgattgtgtagctcc
tgagcccaagtcccagaggtgccacttttccctgacacacagatgacctt
tgtcacctgattcctggaaagtaatgatcagaaatatttgtctttgattc
taattctacatttggcaagagtgaagggagaacaagatgctgatgttggc
tggctcgacgtggtgattgctcatctgtttaagctagactagctatgcag
taaatcctcctgaatattcaagttgggtgacatttcatgaacttcttggc
ttacacataactgagatgagaacacttgttgttcattatcttcatgatga
cgatgaaactattgaaactcactttaaaaacccttccttatgaactactc
agat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119551792_119552952
seq2: B6Ng01-087E20.g_67_1220 (reverse)

seq1  ATCTGAGTAG-TCATAAGGAAGGTGTTTTTTAAAGTGATGTTC-ATAGTT  48
      |||||||||| |||||||||||  | ||||||||||||  ||| |||| |
seq2  ATCTGAGTAGTTCATAAGGAAG--GGTTTTTAAAGTGAGTTTCAATAG-T  47

seq1  TTCATCTGTCATCATGAAGATAATGAACAAC-AGTGTTCCTCATCCTTCA  97
      |||||| |||||||||||||||||||||||| |||||| ||||||  |||
seq2  TTCATC-GTCATCATGAAGATAATGAACAACAAGTGTT-CTCATC--TCA  93

seq1  GTTTAATGTGTAAGCCAAGAAGTTCATGAAATGTCACCAAACTTGAATAT  147
      |||  ||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTT--ATGTGTAAGCCAAGAAGTTCATGAAATGTCACCCAACTTGAATAT  141

seq1  TCAGGA-GATTTACTGCATAGCTAGTTCTAGCTTAAACAGATGAGCAATC  196
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGGAGGATTTACTGCATAGCTAG-TCTAGCTTAAACAGATGAGCAATC  190

seq1  ACCACCGTCGAGCCAGCCAACATCAGCATCTTGTTCTCCCTTCACTCTTG  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCA-CGTCGAGCCAGCCAACATCAGCATCTTGTTCTCCCTTCACTCTTG  239

seq1  CCAAATGTAGAATTAGAATCAAAGACAAATATTTCTGATCATTACTTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTAGAATTAGAATCAAAGACAAATATTTCTGATCATTACTTTCC  289

seq1  AGGAATCAGGTGACAAAGGTCATCTGTGTGTCAGGGAAAAGTGGCACCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGGTGACAAAGGTCATCTGTGTGTCAGGGAAAAGTGGCACCTC  339

seq1  TGGGACTTGGGCTCAGGAGCTACACAATCGAGATCCATGTTAACCTGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTGGGCTCAGGAGCTACACAATCGAGATCCATGTTAACCTGCTT  389

seq1  CTAGAGCTTTTCTCTGAATCTGCCAGGAAGGCTTCCTGACCTGGGTGCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTTTTCTCTGAATCTGCCAGGAAGGCTTCCTGACCTGGGTGCTT  439

seq1  CTCCCCTAGCACTTAGCATCCTAATTGTATTACCATTCCCTACAGAGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTAGCACTTAGCATCCTAATTGTATTACCATTCCCTACAGAGCTC  489

seq1  CTTTCTGCCAACTGAGAAACAAACTTTAAATCATGAAGACTGTATGACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCAACTGAGAAACAAACTTTAAATCATGAAGACTGTATGACTT  539

seq1  TATGAGGTTCCCTGTTCAATAGACCAACCCAATTTACAGATGAGAGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTTCCCTGTTCAATAGACCAACCCAATTTACAGATGAGAGAAAG  589

seq1  AAGAGTCTCACTGGCTCAGAAAGACTCTCTGTCACATGCATACTTAGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTCACTGGCTCAGAAAGACTCTCTGTCACATGCATACTTAGGAG  639

seq1  AAAAACAAACCAACCAAACAAAATGAGATAACGTGGTAAATCCAACCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACCAACCAAACAAAATGAGATAACGTGGTAAATCCAACCACA  689

seq1  GAGAGTTAGTTACCCATTTTCTAAAGTGCATTATCTAAAGGGTAAGATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAGTTACCCATTTTCTAAAGTGCATTATCTAAAGGGTAAGATTT  739

seq1  TCAAAATGGAACCAATTAAACTTGTCTCCTGTTCTCAGCCACAGTTCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGAACCAATTAAACTTGTCTCCTGTTCTCAGCCACAGTTCCTT  789

seq1  GCTCAGGGTGAAACAAGCATACTGTTTACAAAGCACTTGTGCAGATGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGGTGAAACAAGCATACTGTTTACAAAGCACTTGTGCAGATGTTT  839

seq1  ACTCCTTGATTTTACAGCACCCCAAAGAGGCTGAAAGGTTTGCCTAAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGATTTTACAGCACCCCAAAGAGGCTGAAAGGTTTGCCTAAAAT  889

seq1  AACACACAAGCTAAGTGGCAGCATTGAGACTACAGTCTGTCCCTTGAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACAAGCTAAGTGGCAGCATTGAGACTACAGTCTGTCCCTTGAGGT  939

seq1  GAAAAGGCAAGCAGGCTAGCTTCAGCTCTGTGGCTCAGTGATAAAAGTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCAAGCAGGCTAGCTTCAGCTCTGTGGCTCAGTGATAAAAGTAG  989

seq1  ACTGGGAGGTGGCATCAGAAAGAACATCAGACAGTAAATTTGGAAATGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGGTGGCATCAGAAAGAACATCAGACAGTAAATTTGGAAATGTC  1039

seq1  ACAGAATTAACAGCCTGCAAGGAACAAGGGCTTCATCAGGCACCAGATGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAACAGCCTGCAAGGAACAAGGGCTTCATCAGGCACCAGATGC  1089

seq1  TTTACTAGCAGTGTCACAGAGTGGGATGCGTCCCTCCAAAAACCCCGAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGCAGTGTCACAGAGTGGGATGCGTCCCTCCAAAAACCCCGAGA  1139

seq1  AGCACAGTGGAATTC  1161
      |||||||||||||||
seq2  AGCACAGTGGAATTC  1154