BAC Information

Click to search

BAC

Clone NameB6Ng01-087H21
Chromosome12 (Build37)
Map Location 40,655,654 - 40,656,578
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043145, LOC100043148
Downstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087H21.bB6Ng01-087H21.g
ACCDH900604DH900605
length116930
definitionDH900604|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H21, 5' end.DH900605|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctaatgtgcctacaagccctaagacctacaagctcacttgtga
tgtgtttataaaaggataaagagtaaggggactatgttttggtggatgtg
tgatgagatgtggggg
gaattccatcttacaaagatgtacaccagcttttgttgtgcaaaccttgc
tccccaaactaattggtcagttaaaggccaaagattgggcaatagagaga
gataggtgagacttcttgggagggagaaaagaactctggggtgaacaaag
tggaagtcctttttccaggagacattaaaggagctggaccttactacagg
tctggaaggtatagctagcctggtggctggatggggctaggtggttgggt
tgatttagatgagctagtttagagtctgcccagctaagggctaagccttg
aaatattaaaaggtttctttatggttctttgaggtagtagctggttaaag
aataactgatgatatattgatttacaacattatttaatgcatatgaaatt
ttaacaatcatatccatattctattttccctaaattcctaaatcttgcag
aaaagtcaacttttttttcttagcaggtgaaagttttattttattatttt
tgccactgttaataacttactattttgtcttttgttcacgtgacatgagt
aatgttatcagtttttacttacaactttcacgtgtcctgtcccagagaat
aattacagttcttttatagttaggaatttaataatgtctcttatgtttat
gtttttcttttactgatattggatctcagaagtatttctattgtaaaaat
ttcatgtacacttttcaagttagagtataagaaatagttcacattttaaa
atatatcggaatatgcttagacatgaaaacatactataagtaacattata
cagattgaataggttatatttaggaatatatattcctaagtacatatata
tatatacatgaatgcaataactattaagagaaaagagaggccatgaattt
tgaagcagggtaggggaaggggtatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40655654_40656578
seq2: B6Ng01-087H21.g_69_998 (reverse)

seq1  TATATATACCCCT--CCCTACCCTGCTTC-AAATTCATGGCCTCTCTTTT  47
      |||||||||||||  |||||||||||||| ||||||||||||||||||||
seq2  TATATATACCCCTTCCCCTACCCTGCTTCAAAATTCATGGCCTCTCTTTT  50

seq1  CTC-TAATAGTTATTGCATTCATGTATATATATATATGTACTTAGGAATA  96
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATAGTTATTGCATTCATGTATATATATATATGTACTTAGGAATA  100

seq1  TATATTCCTAAATATAACCTATTCAATCTGTATAATGTTACTTATAGTAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTAAATATAACCTATTCAATCTGTATAATGTTACTTATAGTAT  150

seq1  GTTTTCATGTCTAAGCATATTCCGATATATTTTAAAATGTGAACTATTTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGTCTAAGCATATTCCGATATATTTTAAAATGTGAACTATTTC  200

seq1  TTATACTCTAACTTGAAAAGTGTACATGAAATTTTTACAATAGAAATACT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTAACTTGAAAAGTGTACATGAAATTTTTACAATAGAAATACT  250

seq1  TCTGAGATCCAATATCAGTAAAAG-AAAACATAAACATAAGAGACATTAT  295
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGAGATCCAATATCAGTAAAAGAAAAACATAAACATAAGAGACATTAT  300

seq1  TAAATTCCTAACTATAAAAGAACTGTAATTATTCTCTGGGACAGGACACG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTAACTATAAAAGAACTGTAATTATTCTCTGGGACAGGACACG  350

seq1  TGAAAGTTGTAAGTAAAAACTGATAACATTACTCATGTCACGTGAACAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTGTAAGTAAAAACTGATAACATTACTCATGTCACGTGAACAAA  400

seq1  AGACAAAATAGTAAGTTATTAACAGTGGCAAAAATAATAAAATAAAACTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATAGTAAGTTATTAACAGTGGCAAAAATAATAAAATAAAACTT  450

seq1  TCACCTGCTAAGAAAAAAAAGTTGACTTTTCTGCAAGATTTAGGAATTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTAAGAAAAAAAAGTTGACTTTTCTGCAAGATTTAGGAATTTA  500

seq1  GGGAAAATAGAATATGGATATGATTGTTAAAATTTCATATGCATTAAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATAGAATATGGATATGATTGTTAAAATTTCATATGCATTAAATA  550

seq1  ATGTTGTAAATCAATATATCATCAGTTATTCTTTAACCAGCTACTACCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTAAATCAATATATCATCAGTTATTCTTTAACCAGCTACTACCTC  600

seq1  AAAGAACCATAAAGAAACCTTTTAATATTTCAAGGCTTAGCCCTTAGCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCATAAAGAAACCTTTTAATATTTCAAGGCTTAGCCCTTAGCTG  650

seq1  GGCAGACTCTAAACTAGCTCATCTAAATCAACCCAACCACCTAGCCCCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTCTAAACTAGCTCATCTAAATCAACCCAACCACCTAGCCCCAT  700

seq1  CCAGCCACCAGGCTAGCTATACCTTCCAGACCTGTAGTAAGGTCCAGCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACCAGGCTAGCTATACCTTCCAGACCTGTAGTAAGGTCCAGCTC  750

seq1  CTTTAATGTCTCCTGGAAAAAGGACTTCCACTTTGTTCACCCCAGAGTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATGTCTCCTGGAAAAAGGACTTCCACTTTGTTCACCCCAGAGTTC  800

seq1  TTTTCTCCCTCCCAAGAAGTCTCACCTATCTCTCTCTATTGCCCAATCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTCCCAAGAAGTCTCACCTATCTCTCTCTATTGCCCAATCTT  850

seq1  TGGCCTTTAACTGACCAATTAGTTTGGGGAGCAAGGTTTGCACAACAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTAACTGACCAATTAGTTTGGGGAGCAAGGTTTGCACAACAAAA  900

seq1  GCTGGTGTACATCTTTGTAAGATGGAATTC  925
      ||||||||||||||||||||||||||||||
seq2  GCTGGTGTACATCTTTGTAAGATGGAATTC  930