BAC Information

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BAC

Clone NameB6Ng01-087M22
Chromosome12 (Build37)
Map Location 76,451,875 - 76,586,981
singlet/doubletdoublet
Overlap geneRhoj, Gphb5, Ppp2r5e
Upstream geneKcnh5
Downstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087M22.bB6Ng01-087M22.g
ACCDH900830DH900831
length5391,099
definitionDH900830|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M22, 5' end.DH900831|Mus musculus domesticus DNA, BAC clone: B6Ng01-087M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,451,875 - 76,452,419)(76,585,869 - 76,586,981)
sequence
tgcttcctctggtattgttagtaactgccttctttgttgtactgatgggc
ccatgaatgggcaccaaagccaagccctcccaatccattcaagtagcata
acgacatcaaacaagatggcagagccatctttaaaagtagttcattgaaa
caacagcaagcaaggacggtgtggctcctgacgcctctccgtttagtgac
tatttttgccaccactattctcgggggcatttcttgtgaagctgttaggg
atgtggtcaaattaaagaaatggttgtttaaaaactagtcattttgggaa
ttaataatggctgccccttttgaacatttatgaaatttcaagtgttacat
tggagatgttcatgaacactagcattaatacttacacaaaatcagaaaca
ggttgagattctattttcaagatagacagatggcttggtcggtgaaatgc
tcacctcaaaagcatgagagcctgagttcatttctaaaacccacatagaa
gaggaggaggaaaggaaggagggggagaagagggaggcg
gaattcagaaaatgaacatccttagattcatacagtcaggaagaaacaga
gctgggctttgagcccagggttcctctcttaagagtttcgcctcagtaat
gctgctttgtagtctgctgtggtctgtaacatagatttattgtgcagaga
aagagaataaaaataaacatggctcttgtactgtttatctgagaagttga
gatcaactctgcctgtgagactatgctgcttccagaagagaatattgtgt
cacacatagtgcttagaagactgtaagctgacaacacactttcttttaaa
gattattttttattttatgtctatgagtatactgttgctgtcttcagaca
caccaggagagggcatcagaccctgttacagatggttgtgagccaccatg
tggttgctgggaattgaactcaggacctttggaagagtagccagtgttct
tcaacgctgagccatctctccagtccctgacagcacactttcttaaagag
agagatattttaactgaggttccctgtaaatggtaagaatatggattttt
atttgctttgcctggctatatttcttgcttttaatcttaaaagttaaaaa
ttataacaataactatgagtcacaaggaaggcccacgcgattcatggatt
gataggataattaaacatgatgtcctaaaccctggaaactttaccgtaat
acagtttttgtgactttcaatattcttagtgaattctaatttgaagttaa
ctgtaatctttttgttgcagcttgtatatgaatttttcataagatttttg
gaaagccaagaattccaacccagcattgccaaaaaatacatagatcagaa
atttgtattacaggtaagcatttttttggtggttgtatgcatgtaattta
cttactctttatttcattttcttggatattgtaaaacacagaatcttgct
ggtgagattgtgtgcctctaagtaatatgtttatgtgaggtagtttctgt
tattgctataaaagtgacaatacctttaaaattatttgtggtggatttag
ttcatgctaacatcaggagttttattctaatcttcctagctttctattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76451875_76452419
seq2: B6Ng01-087M22.b_48_592

seq1  GAATTCTGCTTCCTCTGGTATTGTTAGTAACTGCCTTCTTTGTTGTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCCTCTGGTATTGTTAGTAACTGCCTTCTTTGTTGTACTG  50

seq1  ATGGGCCCATGAATGGGCACCAAAGCCAAGCCCTCCCAATCCATTCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCCATGAATGGGCACCAAAGCCAAGCCCTCCCAATCCATTCAAGT  100

seq1  AGCATAACGACATCAAACAAGATGGCAGAGCCATCTTTAAAAGTAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACGACATCAAACAAGATGGCAGAGCCATCTTTAAAAGTAGTTCA  150

seq1  TTGAAACAACAGCAAGCAAGGACGGTGTGGCTCCTGACGCCTCTCCGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAACAGCAAGCAAGGACGGTGTGGCTCCTGACGCCTCTCCGTTT  200

seq1  AGTGACTATTTTTGCCACCACTATTCTCGGGGGCATTTCTTGTGAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTATTTTTGCCACCACTATTCTCGGGGGCATTTCTTGTGAAGCTG  250

seq1  TTAGGGATGTGGTCAAATTAAAGAAATGGTTGTTTAAAAACTAGTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGATGTGGTCAAATTAAAGAAATGGTTGTTTAAAAACTAGTCATTT  300

seq1  TGGGAATTAATAATGGCTGCCCCTTTTGAACATTTATGAAATTTCAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTAATAATGGCTGCCCCTTTTGAACATTTATGAAATTTCAAGTG  350

seq1  TTACATTGGAGATGTTCATGAACACTAGCATTAATACTTACACAAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGGAGATGTTCATGAACACTAGCATTAATACTTACACAAAATCA  400

seq1  GAAACAGGTTGAGATTCTATTTTCAAGATAGACAGATGGCTTGGTCGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTTGAGATTCTATTTTCAAGATAGACAGATGGCTTGGTCGGTG  450

seq1  AAATGCTCACCTCAAAAGCATGAGAGCCTGAGTTCATTTCTAAAACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCACCTCAAAAGCATGAGAGCCTGAGTTCATTTCTAAAACCCAC  500

seq1  ATAGAAGAGGAGGAGGAAAGGAAGGAGGGGGAGAAGAGGGAGGCG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAGGAGGAGGAAAGGAAGGAGGGGGAGAAGAGGGAGGCG  545

seq1: chr12_76585869_76586981
seq2: B6Ng01-087M22.g_67_1165 (reverse)

seq1  AAAT-GAAAGCTTAGGAAGATTTAGGAATAGACTCCTGATGTTTAGCATG  49
      |||| |||||| |||||||| |||| |  | |||||||||| ||||||| 
seq2  AAATAGAAAGC-TAGGAAGA-TTAGAATAAAACTCCTGATG-TTAGCAT-  46

seq1  GAACTAAATTCCACCACAAATAATTTTTAAAGGTATTGTCACTTTTAATA  99
      |||||||| |||||||||||||| |||||||||||||||||||||| |||
seq2  GAACTAAA-TCCACCACAAATAA-TTTTAAAGGTATTGTCACTTTT-ATA  93

seq1  GGCAATAACAGAAACTACCTCACATAAACATATTTACTTAGGAGGCAACA  149
       ||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  -GCAATAACAGAAACTACCTCACATAAACATA-TTACTTA-GAGGC-ACA  139

seq1  CAATCTCACCAGCAAGATTTCTGTTGTTTTTAACAATATCCAAGAAAATG  199
      ||||||||||||||||| ||||| ||||||  ||||||||||||||||||
seq2  CAATCTCACCAGCAAGA-TTCTG-TGTTTT--ACAATATCCAAGAAAATG  185

seq1  AAATAAAGAGTAAGTAAATTACATGCATACAACCACCAAAAAAATGCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAGTAAGTAAATTACATGCATACAACCACCAAAAAAATGCTTA  235

seq1  CCTGTAATACAAATTTCTGATCTATGTATTTTTTGGCAATGCTGGGTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATACAAATTTCTGATCTATGTATTTTTTGGCAATGCTGGGTTGG  285

seq1  AATTCTTGGCTTTCCAAAAATCTTATGAAAAATTCATATACAAGCTGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGCTTTCCAAAAATCTTATGAAAAATTCATATACAAGCTGCAA  335

seq1  CAAAAAGATTACAGTTAACTTCAAATTAGAATTCACTAAGAATATTGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGATTACAGTTAACTTCAAATTAGAATTCACTAAGAATATTGAAA  385

seq1  GTCACAAAAACTGTATTACGGTAAAGTTTCCAGGGTTTAGGACATCATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAAACTGTATTACGGTAAAGTTTCCAGGGTTTAGGACATCATGT  435

seq1  TTAATTATCCTATCAATCCATGAATCGCGTGGGCCTTCCTTGTGACTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATCCTATCAATCCATGAATCGCGTGGGCCTTCCTTGTGACTCAT  485

seq1  AGTTATTGTTATAATTTTTAACTTTTAAGATTAAAAGCAAGAAATATAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGTTATAATTTTTAACTTTTAAGATTAAAAGCAAGAAATATAGC  535

seq1  CAGGCAAAGCAAATAAAAATCCATATTCTTACCATTTACAGGGAACCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGCAAATAAAAATCCATATTCTTACCATTTACAGGGAACCTCA  585

seq1  GTTAAAATATCTCTCTCTTTAAGAAAGTGTGCTGTCAGGGACTGGAGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATATCTCTCTCTTTAAGAAAGTGTGCTGTCAGGGACTGGAGAGA  635

seq1  TGGCTCAGCGTTGAAGAACACTGGCTACTCTTCCAAAGGTCCTGAGTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGTTGAAGAACACTGGCTACTCTTCCAAAGGTCCTGAGTTCA  685

seq1  ATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGGTCTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGGTCTGAT  735

seq1  GCCCTCTCCTGGTGTGTCTGAAGACAGCAACAGTATACTCATAGACATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCTGGTGTGTCTGAAGACAGCAACAGTATACTCATAGACATAA  785

seq1  AATAAAAAATAATCTTTAAAAGAAAGTGTGTTGTCAGCTTACAGTCTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATAATCTTTAAAAGAAAGTGTGTTGTCAGCTTACAGTCTTCT  835

seq1  AAGCACTATGTGTGACACAATATTCTCTTCTGGAAGCAGCATAGTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTATGTGTGACACAATATTCTCTTCTGGAAGCAGCATAGTCTCAC  885

seq1  AGGCAGAGTTGATCTCAACTTCTCAGATAAACAGTACAAGAGCCATGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGTTGATCTCAACTTCTCAGATAAACAGTACAAGAGCCATGTTT  935

seq1  ATTTTTATTCTCTTTCTCTGCACAATAAATCTATGTTACAGACCACAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTCTCTTTCTCTGCACAATAAATCTATGTTACAGACCACAGCA  985

seq1  GACTACAAAGCAGCATTACTGAGGCGAAACTCTTAAGAGAGGAACCCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAAGCAGCATTACTGAGGCGAAACTCTTAAGAGAGGAACCCTGG  1035

seq1  GCTCAAAGCCCAGCTCTGTTTCTTCCTGACTGTATGAATCTAAGGATGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCCCAGCTCTGTTTCTTCCTGACTGTATGAATCTAAGGATGTT  1085

seq1  CATTTTCTGAATTC  1113
      ||||||||||||||
seq2  CATTTTCTGAATTC  1099