BAC Information

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BAC

Clone NameB6Ng01-088A12
ChromosomeX (Build37)12 (Build37)
Map Location 27,056,759 - 27,057,39110,328,622 - 10,329,151
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208
Downstream geneEG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A12.bB6Ng01-088A12.g
ACCDH900998DH900999
length957996
definitionDH900998|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A12, 5' end.DH900999|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,056,759 - 27,057,391)(10,328,622 - 10,329,151)
sequence
gaattcactttgggagttgaaagtgtagtgtgtacatgctaagtgtatag
ttccatgagagagataaacaaataatgcaagaataaagccaaagctcctg
aacaacaaactatattaactattctgcttctaagtaactaacaaaataca
caggcttgatctaggcctctcagcttaaaggtagtagatgtacagcttgg
tcgtcatgcgggtcctgaagaactagagtgggggttatctcaaaagaaac
aacaatttgaaaattcattgggaataacaaaaaacctagcacagtgaaaa
ctattctcaacaataaaagaacttctggtggaaccacattccctgacctc
aagttgtattacagagcaaacgtaataaaaaaaaaaaaaaaaaaaaaaac
tgcatggtattggtacagagacaggcatgtagaccagtggaatgggattg
aagaactagaaatgaatcaacacacatatggtcacatattctttgacaag
ggagctaaaaataatccagtagaaaaaagacagcattttcaacagatggt
gctgtttcaagtagaagttagcttgtagaaaaatgcaaattgatccattt
ttgcctcctcgtacaaagctcaattccaaacggatcaaggacctcctcat
aaaaccagatacattgaaactaatagaaaagtaagtggggaagagtcttg
ggcacatgggcacaggggaaaaattcctgaacaacaagagttaacaaatg
ggacctcataaaattgcaaagcttctgtaaggcaaaggacactgtcaata
ggacaaaatggaaaccaacagaatgggaaaaaattttaacaatcctacat
caaatagaaacctaaaatctagtatatacaaagaactcaagaagttagat
gccagagaaaaatgaccctataaaatggggtacagagctaacaaagatct
cactagg
gaattctgtaggcttcttgtatattcatgggaatctctttctttaggtat
tggaagctttcttctataacattgttgaagatatttgctggccctttaag
ttgagaatcttcattctcaactactattatccataggtttggtcttctca
ttgtgtcctgggtttcctgaatgttttgagttgggatctttttgcatttt
gcattttctttgattgttgtgttcatgttacctatggaatcttctgcatc
tgagattctctttccatctcttgtattctgttgttgatgctcacatctat
gtttcctgatttctttcctagggtttttatctccagagttgtttcccttt
agtttttcttcattatttctacttctatttttagatcttggatttttttt
tattcaattccatcacctatttggttgtgttttcctgtaattctttacgg
gatttttatgtttcttctaccagtttagcagtgtttacctttagttcttt
aaggacttgtacttgtttagcagtgttctcctgtaattccttgagggatt
tctgtgcttcttctttaagggcttctacctgtttagcggtgttctcctgt
tattcctttagggatttctgtgtttcctctttaagggcttctacctgttt
agccgtgttctcctgtatttctttaagttattaatgtacttcttaaaatc
ttctaccaccatcaagagatatgattttaaatccgagtcttgcttgtcgg
gtttttggggtatccaggacgttctgtggtgggcttactggattctgatg
atgccaggtgttcttgggttttgttagaaagatttttaccttttcctctc
aacatctggtaatctctgctgttaatgttcaagctgtctctggctggagc
ttggtcctcctgtgattctgttagcctctgtcagcactcctgagaatcca
ctctcacagagtcccagtctcagattatctctgcaagcagtctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27056759_27057391
seq2: B6Ng01-088A12.b_49_679

seq1  GAATTCACTTTGGGAGTTGAAAGTGTAGTGTGTACATGCTAAGTGTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGGGAGTTGAAAGTGTAGTGTGTACATGCTAAGTGTATAG  50

seq1  TTCCATGAGAGAGATAAACAAATAATGCAAGAATAAAGCCAAAGCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAGAGAGATAAACAAATAATGCAAGAATAAAGCCAAAGCTCCTG  100

seq1  AACAACAAACTATATTAACTATTCTGCTTCTAAGTAACTAACAAAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAACTATATTAACTATTCTGCTTCTAAGTAACTAACAAAATACA  150

seq1  CAGGCTTGATCTAGGCCTCTCAGCTTAAAGGTAGTAGATGTACAGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGATCTAGGCCTCTCAGCTTAAAGGTAGTAGATGTACAGCTTGG  200

seq1  TCGTCATGCGGGTCCTGAAGAACTAGAGTGGGGGTTATCTCAAAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCATGCGGGTCCTGAAGAACTAGAGTGGGGGTTATCTCAAAAGAAAC  250

seq1  AACAATTTGAAAATTCATTGGGAATAACAAAAAACCTAGCACAGTGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTGAAAATTCATTGGGAATAACAAAAAACCTAGCACAGTGAAAA  300

seq1  CTATTCTCAACAATAAAAGAACTTCTGGTGGAACCACATTCCCTGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCAACAATAAAAGAACTTCTGGTGGAACCACATTCCCTGACCTC  350

seq1  AAGTTGTATTACAGAGCAAACGTAATAAAAAAAAAAAAAAAAAAAAAAAA  400
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  AAGTTGTATTACAGAGCAAACGTAAT--AAAAAAAAAAAAAAAAAAAAAA  398

seq1  ACTGCATGGTATTGGTACAGAGACAGGCATGTAGACCAGTGGAATGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGGTATTGGTACAGAGACAGGCATGTAGACCAGTGGAATGGGAT  448

seq1  TGAAGAACTAGAAATGAATCAACACACATATGGTCACATATTCTTTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACTAGAAATGAATCAACACACATATGGTCACATATTCTTTGACA  498

seq1  AGGGAGCTAAAAATAATCCAGTAGAAAAAAGACAGCATTTTCAACAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTAAAAATAATCCAGTAGAAAAAAGACAGCATTTTCAACAGATG  548

seq1  GTGCTGTTTCAAGTAGAAGTTAGCTTGTAGAAAAATGCAAATTGATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTTCAAGTAGAAGTTAGCTTGTAGAAAAATGCAAATTGATCCAT  598

seq1  TTTTGCCTCCTCGTACAAAGCTCAATTCCAAAC  633
      |||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCCTCGTACAAAGCTCAATTCCAAAC  631

seq1: chr12_10328622_10329151
seq2: B6Ng01-088A12.g_74_751 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATAACTTAAAGAAATACAGGAGAACACGGCTAAACAGGTAGAAGCCCTTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGAGGAAACACAGAAATCCCTAAAGGAATAACAGGAGAACACCGCTAAA  100

seq1  ----------------------------ATAACTCACATAAAGAAATACA  22
                                  | || || |  || ||| ||||
seq2  CAGGTAGAAGCCCTTAAAGAAGAAGCACAGAAATCCCTCAAGGAATTACA  150

seq1  GGAGAGCACTGCTAAAGAGCTACAAGTCCTTAAAGAAAAACAGGAAAACA  72
      ||||| |||||||||| |  |||||||||||||||||  | ||| |||||
seq2  GGAGAACACTGCTAAACAAGTACAAGTCCTTAAAGAACTAAAGGTAAACA  200

seq1  CAACTAAACAGGTGGAAG------------TTCTTAAAGAAAAACAGAAA  110
      |  |||||| ||| ||||              | |||||||  |||| ||
seq2  CTGCTAAACTGGTAGAAGAAACATAAAAATCCCGTAAAGAATTACAGGAA  250

seq1  AACACATCCAAAGAGGTGATGGAAATGA--ACAAAATGATACTAAACCTA  158
      |||||| ||||| ||||||||||| |||  | ||||  || | | | |||
seq2  AACACAACCAAATAGGTGATGGAATTGAATAAAAAAAAATCCAAGATCTA  300

seq1  AAAAGGGAAGTAGACATAATAAAGAAAACACAAAGTAAGGCAACACTGGA  208
      ||||  |||||||| ||||| |||||||   ||||  |  |||| |||||
seq2  AAAATAGAAGTAGAAATAATGAAGAAAAACTAAAGGGAAACAACTCTGGA  350

seq1  GATAGAAACCCTACAAAAGAAATCAGGAACCATAGATGTGAGCATCTGCA  258
      |||| ||||||||  |||||||||||||| ||||||||||||||||  ||
seq2  GATAAAAACCCTAGGAAAGAAATCAGGAAACATAGATGTGAGCATCAACA  400

seq1  ACAGAATACAAGAGATGGAAGAGAGAATATCAGGTGCAGAAGATTCCATA  308
      |||||||||||||||||||| ||||||| |||| ||||||||||||||||
seq2  ACAGAATACAAGAGATGGAA-AGAGAATCTCAGATGCAGAAGATTCCATA  449

seq1  G----------CATAACAATCAAATAAAATGCAAAATGCAAAGAGATCCT  348
      |          || |||||||||| ||||||||||||||||| |||||| 
seq2  GGTAACATGAACACAACAATCAAAGAAAATGCAAAATGCAAAAAGATCCC  499

seq1  AACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTAC  398
      |||||||||||| ||||||| |||||||||||||||||||||||||||| 
seq2  AACTCAAAACATTCAGGAAACCCAGGACACAATGAGAAGACCAAACCTAT  549

seq1  AGATAATAGGAGTAGATGAGAATGAAGATTTTCAACTTAAAGGACCAGCA  448
       ||||||   ||||| |||||||||||||| |||||||||||| ||||||
seq2  GGATAAT---AGTAGTTGAGAATGAAGATTCTCAACTTAAAGGGCCAGCA  596

seq1  AATATCTTCAACAAAATTATAGAAGAAAACATCCCAAACCTAAAGAAAGA  498
      ||||||||||||||  |||||||||||| | ||| | |||||||||||||
seq2  AATATCTTCAACAATGTTATAGAAGAAAGCTTCCAATACCTAAAGAAAGA  646

seq1  GATGCCCATGAACATACAAGAAGCCTACAGAA  530
      ||| |||||||| |||||||||||||||||||
seq2  GATTCCCATGAATATACAAGAAGCCTACAGAA  678