BAC Information

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BAC

Clone NameB6Ng01-088G08
Chromosome12 (Build37)
Map Location 53,264,571 - 53,265,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088G08.bB6Ng01-088G08.g
ACCDH901257DH901258
length1,1381,054
definitionDH901257|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G08, 5' end.DH901258|Mus musculus domesticus DNA, BAC clone: B6Ng01-088G08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgagtatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagtcagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggtccagcaaca
cagaagtggatgctcacagtcagctaatggatggatcatagggctcctat
ggaggagctagagaagtagccagagctaaagggatctgcaccctatagtg
acacatatgagctaccagtacccggagctctgactctagctgcattatat
caagatgctagtcgcatcactggaaagaaagtcatgaactgcaactttat
tgctcagtaagggaatcagcaaaaggggatggtggtca
gaattcattgagagacataccaaaggatagagcaatccatgcacccttaa
ccgtacgcaaagaattacaggcaactaaggaatcgagggaatgaaaaaca
tggccttacccagagaaaagcacaccaattgtttacctaataccaaatga
tctgttctaaaaacatatatacctataacattatatagactgaataggtt
acatttagaaatatttatgtattatacatattcatatatgcaaataacag
caattaataaagcaagaatccatggatttaaaagagagcaataataatta
tgtatgaggttggaaggaagaaaagaaagaaggaaataatgtgattgtat
tataatctaaatttttaggatggaaaattgagaggatatgaaagaaatac
aatagttttctgtttttgttatttttcctagaagtcattttctagctaaa
attgtttgttaaaaagaaatcactagaacctgagactgtggtacatagag
aagcaggctacccaggcctgatctagggcacaagtcccttccgctcgact
cgagccccgggctaccttgccagcagagtcttgcccaacacccgcaaggg
cccacacgggacgccccacgggatcctaagacctctggtgaatggaacac
agcgcctgccccaatccaatcgcacggaacctgagactgctgtacatagg
gaagcagtctacccaggcttaatctggggcacaaaccccttccgctcgac
tcgagccccgggctaccttgccagcagagtcgcctgacacccgcaagggc
ccacacaggattccacacgagaacctaagacctctagtgagtggaacaca
acttctgccaggagtctggtttgaacacgagatatctgggtacctgccct
gcaagaagagagcttgcctgcagagatactctgcccactgaaactaagag
agtgctaccctccaggtctgcttatagaggctacagagtcacctgaaaaa
caagctcttaacagtgacactaaaacagctagcttcagagaatacagatg
gcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53264571_53265121
seq2: B6Ng01-088G08.g_614_1108 (reverse)

seq1  TCTCTGAAGCTAGCTGTTATAGTTGTCACTGTTAAGAGCTTGTTCTTCAG  50
      |||||||||||||||||| ||| ||||||||||||||||||||| |||||
seq2  TCTCTGAAGCTAGCTGTTTTAG-TGTCACTGTTAAGAGCTTGTTTTTCAG  49

seq1  GTGACTCTGTTAGCCTCTATAAGGAGATCTGGAGGGTAGCACTCTCCTTA  100
      ||||||||| ||||||||||||| ||| ||||||||||||||||| ||||
seq2  GTGACTCTG-TAGCCTCTATAAGCAGACCTGGAGGGTAGCACTCT-CTTA  97

seq1  GTTTCAGTGGGCAGAGTATTCTCTGCAGGCAAGCTCTCTTCTTGCAGGGA  150
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GTTTCAGTGGGCAGAGTA-TCTCTGCAGGCAAGCTCTCTTCTTGCAGGGC  146

seq1  AGGTACCCAGATATCTGGTGTTCGAACCAGACTCCTGGCAGAAGTTGTGT  200
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AGGTACCCAGATATCTCGTGTTCAAACCAGACTCCTGGCAGAAGTTGTGT  196

seq1  TCCACTCACTAGAGGTCTTAGGATCCCGTGTGGAATCCTGTGTGGGCCCT  250
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  TCCACTCACTAGAGGTCTTAGGTTCTCGTGTGGAATCCTGTGTGGGCCCT  246

seq1  TGCGGGTGTCAGGCGACTCCGCTGGCAAGGTAGCCCGGGGCTTTAGTGGA  300
      ||||||||||||||||||| ||||||||||||||||||||||  ||| ||
seq2  TGCGGGTGTCAGGCGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTCGA  296

seq1  GCGGAAGGGGCTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTAT  350
      |||||||||| ||||||||||||| | ||| |||||| ||||||||||||
seq2  GCGGAAGGGGTTTGTGCCCCAGATTAAGCCTGGGTAGACTGCTTCCCTAT  346

seq1  GTACCGCAGTCTCAGGTTCCGCGCGATTGGATTGGGGCAGGCTCTGTGTT  400
      |||| |||||||||||||||| |||||||||||||||||||| |||||||
seq2  GTACAGCAGTCTCAGGTTCCGTGCGATTGGATTGGGGCAGGCGCTGTGTT  396

seq1  CCACTCACCAGAGGTCTTAGGATCCCGTGGGGAGTCCTGTGTGGGCCCTT  450
      ||| |||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CCATTCACCAGAGGTCTTAGGATCCCGTGGGGCGTCCCGTGTGGGCCCTT  446

seq1  GCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCCG-----GAGACT  495
      ||||||||||||||||||||||||||||||||||||| |     ||| | 
seq2  GCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTC-  495

seq1  CTGCTGGCAAGGTAGCCCCCGAGACTCTGCTGGCAAGGTAGCCCGGGGCT  545
                                                        
seq2  --------------------------------------------------  495

seq1  CGAGTC  551
            
seq2  ------  495