BAC Information

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BAC

Clone NameB6Ng01-088M20
Chromosome12 (Build37)
Map Location 112,004,113 - 112,149,296
singlet/doubletdoublet
Overlap geneWdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik
Upstream geneLOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1
Downstream geneAnkrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088M20.bB6Ng01-088M20.g
ACCDH901558DH901559
length1,1331,062
definitionDH901558|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M20, 5' end.DH901559|Mus musculus domesticus DNA, BAC clone: B6Ng01-088M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,148,163 - 112,149,296)(112,004,113 - 112,005,174)
sequence
gaattcagaaatctacctacctctgccttccaagtgctgggattaaagat
gtgtggcaccactgcccagccattctaaattcttaatcttcacaataaca
aaaatttaaagaactcttttctaatgaaggaaatgctggttaatcatgag
taaacagaactcttattaagagagaaccaaaggctaagaatagtggtgta
tgactttaaccccagcactcagaggcaaactgtgagtttgaggccagcct
ggtctccatagtgagttccaggaacagccagaacgatagagagagagcat
agagagagagcacgtctcaaaaccctaagggagtgagaatataatgaagg
agctttgacaagaggatgtttcccaagcaattaagaaaaaagtctgaagt
caaaagactccaacccagaaccaagaccaacttgattctcagcgtggaca
agcacagcgtggacaagcactgagaggtggtacctgccctgcctggccca
ggtttgcccagctgattaaataatatacccaaaaaggatttataaaccga
ttcccagcatctttgcctcttaaatcaataatactattaacactgactca
agctccatgtaagtttattaaaaccatggcacagaacacaaatatctaag
cttgaagttttcccttctggtaaatccctttagtttctgatgcagtcatt
tctacagcaatcagcctgctgtgtatacaagagcaagctccataccctgg
gtaccaagtgaagcctcagtttaccaaagtaggtcatagtcctggtcctc
ttgtagattagctatgagacatgcacattaaaaaaaaaaaaaaaaaagct
gcctacagcaactggggggtggtaccgacagctcgctttcatatgctact
ttttagctttcagaatattttcatgggctataaataaatccaatgccaga
tggagatacaggttaacaaatctggatcttaagtaataaggagcagagtg
atgctttcagatccttaatgctgctagtataccagtcagtcttgcttgac
tatgggttaggggcagatgggagaacaagggggtggagctagtagaacag
aacagctcagcctgcttgcaatagctcagtcaa
gaattcagaccaggcaggccttgaactcagagttcatctacctcttctct
cctttctgaggactggattaaataaaacctcacagtgccaccatgcctgg
attctgtattatttttttgaagtccatattaatttactctacagttcctc
atcctgtcagtgtttgggtccttgactacaagacagacagactcctctat
ttctcagtgcagtgttccttgtagcatattcaaacatgatttttgaaaaa
ggcatgagctaactagatcctgcacgtcctcctctggggtctagcctgag
aagtgtagttctcaccttgcagcaagaaaatctatctttgtaacaaacag
aaatctgcaaccaatgaaaatgcagagttgtggaacccagtcccagtaga
tacattggcaatacaactcctgcatgtaaggctcagaaatcattgcagaa
gagagggtggacagagtgtaagagccagaggcaaagggtttgctgtgagg
gtgtgtctcttgggaatatcagaagctccattcataaatcctcgccaaca
caatgcctgaacacaagctaaataaggaggccaccaatagacacactaac
ttggaaagggaaaaactcatgaggcctcagcttcaccaagaattacaggc
agctaaagaatgctgacagcaggggaaagcgtctttcctggaaaaagcac
aggctggtgagatggctcagtgggtaagagcacccgactgctcttcccaa
ggttggaagttcaaatccccagcaaccacatggtggctcacaaccacccg
taatgagatctgatgccctcttctggtgcgtctgaagacagctacagtgt
actttacatataataaataaataaataaataaataaataaatagaaaaag
cacaccaactggctatccagtaagtatatatatatatattttctatatgc
ttcagagttaagtctagaattcctagtggtagaaagtctagctgagctag
ggatggtggcatactcttttatcccacattcagaaagggggtgatttctc
tgtggagtttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112148163_112149296
seq2: B6Ng01-088M20.b_44_1176 (reverse)

seq1  TTGACCTGAACTATTGC-AGCAGGCCTGAGCTGGTCTGTCTTCCTAGCTC  49
      |||| |||| ||||||| |||||| |||||||| |||||  | |||||||
seq2  TTGA-CTGAGCTATTGCAAGCAGG-CTGAGCTGTTCTGTTCTACTAGCTC  48

seq1  CACTCCCTTGTTCCTCCCATCTGCCCCTAA-CCATAGTCAAGCAAGACCT  98
      ||| |||||||| ||||||||||||||||| |||||||||||||||| ||
seq2  CACCCCCTTGTT-CTCCCATCTGCCCCTAACCCATAGTCAAGCAAGA-CT  96

seq1  GACTGGTAATACTAGCAGCATTAAGGATCTTGAAAGCATCACTCTGCTCC  148
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  GACTGGT-ATACTAGCAGCATTAAGGATC-TGAAAGCATCACTCTGCTCC  144

seq1  TTATTACTTAAGATCCAGATTTGTTAACCTGTATCTCCATCTGGCATTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTAAGATCCAGATTTGTTAACCTGTATCTCCATCTGGCATTGG  194

seq1  ATTTATTTATAGCCCATGAAAATATTCTGAAAGCTAAAAAGTAGCATATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATAGCCCATGAAAATATTCTGAAAGCTAAAAAGTAGCATATG  244

seq1  AAAGCGAGCTGTCGGTACCA-CCCCCAGTTGCTGTAGGCAGC--TTTTTT  295
      |||||||||||||||||||| |||||||||||||||||||||  ||||||
seq2  AAAGCGAGCTGTCGGTACCACCCCCCAGTTGCTGTAGGCAGCTTTTTTTT  294

seq1  TTTTTTTTTTAATGTGCATGTCTCATAGCTAATCTACAAGAGGACCAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAATGTGCATGTCTCATAGCTAATCTACAAGAGGACCAGGA  344

seq1  CTATGACCTACTTTGGTAAACTGAGGCTTCACTTGGTACCCAGGGTATGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCTACTTTGGTAAACTGAGGCTTCACTTGGTACCCAGGGTATGG  394

seq1  AGCTTGCTCTTGTATACACAGCAGGCTGATTGCTGTAGAAATGACTGCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTCTTGTATACACAGCAGGCTGATTGCTGTAGAAATGACTGCAT  444

seq1  CAGAAACTAAAGGGATTTACCAGAAGGGAAAACTTCAAGCTTAGATATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTAAAGGGATTTACCAGAAGGGAAAACTTCAAGCTTAGATATTT  494

seq1  GTGTTCTGTGCCATGGTTTTAATAAACTTACATGGAGCTTGAGTCAGTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTGCCATGGTTTTAATAAACTTACATGGAGCTTGAGTCAGTGT  544

seq1  TAATAGTATTATTGATTTAAGAGGCAAAGATGCTGGGAATCGGTTTATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTATTATTGATTTAAGAGGCAAAGATGCTGGGAATCGGTTTATAA  594

seq1  ATCCTTTTTGGGTATATTATTTAATCAGCTGGGCAAACCTGGGCCAGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTGGGTATATTATTTAATCAGCTGGGCAAACCTGGGCCAGGCA  644

seq1  GGGCAGGTACCACCTCTCAGTGCTTGTCCACGCTGTGCTTGTCCACGCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTACCACCTCTCAGTGCTTGTCCACGCTGTGCTTGTCCACGCTG  694

seq1  AGAATCAAGTTGGTCTTGGTTCTGGGTTGGAGTCTTTTGACTTCAGACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAGTTGGTCTTGGTTCTGGGTTGGAGTCTTTTGACTTCAGACTT  744

seq1  TTTTCTTAATTGCTTGGGAAACATCCTCTTGTCAAAGCTCCTTCATTATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATTGCTTGGGAAACATCCTCTTGTCAAAGCTCCTTCATTATA  794

seq1  TTCTCACTCCCTTAGGGTTTTGAGACGTGCTCTCTCTCTATGCTCTCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTCCCTTAGGGTTTTGAGACGTGCTCTCTCTCTATGCTCTCTCT  844

seq1  CTATCGTTCTGGCTGTTCCTGGAACTCACTATGGAGACCAGGCTGGCCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTTCTGGCTGTTCCTGGAACTCACTATGGAGACCAGGCTGGCCTC  894

seq1  AAACTCACAGTTTGCCTCTGAGTGCTGGGGTTAAAGTCATACACCACTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACAGTTTGCCTCTGAGTGCTGGGGTTAAAGTCATACACCACTAT  944

seq1  TCTTAGCCTTTGGTTCTCTCTTAATAAGAGTTCTGTTTACTCATGATTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCTTTGGTTCTCTCTTAATAAGAGTTCTGTTTACTCATGATTAA  994

seq1  CCAGCATTTCCTTCATTAGAAAAGAGTTCTTTAAATTTTTGTTATTGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTTCCTTCATTAGAAAAGAGTTCTTTAAATTTTTGTTATTGTGA  1044

seq1  AGATTAAGAATTTAGAATGGCTGGGCAGTGGTGCCACACATCTTTAATCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAATTTAGAATGGCTGGGCAGTGGTGCCACACATCTTTAATCC  1094

seq1  CAGCACTTGGAAGGCAGAGGTAGGTAGATTTCTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGAAGGCAGAGGTAGGTAGATTTCTGAATTC  1133

seq1: chr12_112004113_112005174
seq2: B6Ng01-088M20.g_67_1128

seq1  GAATTCAGACCAGGCAGGCCTTGAACTCAGAGTTCATCTACCTCTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAGGCAGGCCTTGAACTCAGAGTTCATCTACCTCTTCTCT  50

seq1  CCTTTCTGAGGACTGGATTAAATAAAACCTCACAGTGCCACCATGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAGGACTGGATTAAATAAAACCTCACAGTGCCACCATGCCTGG  100

seq1  ATTCTGTATTATTTTTTTGAAGTCCATATTAATTTACTCTACAGTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATTATTTTTTTGAAGTCCATATTAATTTACTCTACAGTTCCTC  150

seq1  ATCCTGTCAGTGTTTGGGTCCTTGACTACAAGACAGACAGACTCCTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCAGTGTTTGGGTCCTTGACTACAAGACAGACAGACTCCTCTAT  200

seq1  TTCTCAGTGCAGTGTTCCTTGTAGCATATTCAAACATGATTTTTGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTGCAGTGTTCCTTGTAGCATATTCAAACATGATTTTTGAAAAA  250

seq1  GGCATGAGCTAACTAGATCCTGCACGTCCTCCTCTGGGGTCTAGCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGCTAACTAGATCCTGCACGTCCTCCTCTGGGGTCTAGCCTGAG  300

seq1  AAGTGTAGTTCTCACCTTGCAGCAAGAAAATCTATCTTTGTAACAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGTTCTCACCTTGCAGCAAGAAAATCTATCTTTGTAACAAACAG  350

seq1  AAATCTGCAACCAATGAAAATGCAGAGTTGTGGAACCCAGTCCCAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCAACCAATGAAAATGCAGAGTTGTGGAACCCAGTCCCAGTAGA  400

seq1  TACATTGGCAATACAACTCCTGCATGTAAGGCTCAGAAATCATTGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGCAATACAACTCCTGCATGTAAGGCTCAGAAATCATTGCAGAA  450

seq1  GAGAGGGTGGACAGAGTGTAAGAGCCAGAGGCAAAGGGTTTGCTGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTGGACAGAGTGTAAGAGCCAGAGGCAAAGGGTTTGCTGTGAGG  500

seq1  GTGTGTCTCTTGGGAATATCAGAAGCTCCATTCATAAATCCTCGCCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCTTGGGAATATCAGAAGCTCCATTCATAAATCCTCGCCAACA  550

seq1  CAATGCCTGAACACAAGCTAAATAAGGAGGCCACCAATAGACACACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCTGAACACAAGCTAAATAAGGAGGCCACCAATAGACACACTAAC  600

seq1  TTGGAAAGGGAAAAACTCATGAGGCCTCAGCTTCACCAAGAATTACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGGGAAAAACTCATGAGGCCTCAGCTTCACCAAGAATTACAGGC  650

seq1  AGCTAAAGAATGCTGACAGCAGGGGAAAGCGTCTTTCCTGGGAAAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTAAAGAATGCTGACAGCAGGGGAAAGCGTCTTTCCT-GGAAAAAGCA  699

seq1  CAGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCCA  749

seq1  AGGTTGGAAGTTCAAATCCCCAGCAACCACATGGTGGCTCACAACCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAGTTCAAATCCCCAGCAACCACATGGTGGCTCACAACCACCC  799

seq1  GTAATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAGCTACAGTG  849

seq1  TACTTTACATATAATAAATAAATAAATAAATAAATAAATAAATAGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACATATAATAAATAAATAAATAAATAAATAAATAAATAGAAAAA  899

seq1  GCACACCAACTGGCTATCCAGTAAGTATATATTATATATATTTTCTATAT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCACACCAACTGGCTATCCAGTAAGTATATA-TATATATATTTTCTATAT  948

seq1  GCTTCAGAGTTAAGTCTAGAATTCCTAGTGGTAGAAAGTCTAGCTGAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGAGTTAAGTCTAGAATTCCTAGTGGTAGAAAGTCTAGCTGAGCT  998

seq1  AGGGATGGTGGCATACTCTTTTAATCCCAACATTCAG-AAGGTGGTGA--  1047
      |||||||||||||||||||||| ||||| |||||||| |||| |||||  
seq2  AGGGATGGTGGCATACTCTTTT-ATCCC-ACATTCAGAAAGGGGGTGATT  1046

seq1  TCTCTGT-GAGTTTGA  1062
      ||||||| ||||||||
seq2  TCTCTGTGGAGTTTGA  1062