BAC Information

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BAC

Clone NameB6Ng01-088P10
Chromosome12 (Build37)
Map Location 75,792,154 - 75,981,534
singlet/doubletdoublet
Overlap genenone
Upstream genePrkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P10.bB6Ng01-088P10.g
ACCDH901673DH901674
length7421,127
definitionDH901673|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P10, 5' end.DH901674|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,981,016 - 75,981,534)(75,792,154 - 75,793,280)
sequence
gaattccattcttttcagcaaatgtatatcagataaaaccatcaagattg
tgttctggatcatttcagttcataggaaatgggttttcacatcaatctag
agtcaattttcacatccataccctaagatattattcatttgctttctgtt
tctttgaattgatacttactaaaaaaaaaaaaatcccttaaatacactca
tacagggggcattgttgtggttaatagttttctgggggttagtcgcagcc
tgttgcctttaaatatccattaggagtttctatcccatttcagactattt
ggttgacaaataagacacagagaccttcagatttatattaagctttaaat
tactatagctgggcagatagcatcatctctctatgctattttgtctactt
accaatggtgctccctgagatatcgcttgccatgttccgcttttgctgtt
cccactctatcaggccagccctcatggccatgcgttcaagatccaccgac
cccatggtgacctccttcctttttcttctctggctttcctttgtggcatc
tacctgagacccccaaactccccagatctgaatctctgcctacttctctt
ctgttcagctacagccatctttattaatcaaccatagataatttggggga
taaggttttcataacagaagctgaagtatgtgagcatctccttgtccctg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcacaggctgggagacttggtgatccaaccatggcttatttggcag
gcctgtaattatagtgcattaagggatacaaaagctctaggactggataa
gtaccagaaacctctcttgtcttttattatctaggtttccaaggtgatgg
gagtgtaggaagaattaggaagagagtggaagaggaaagtgtaatattgt
ggctaatcatagttataaaacttttttcaaagcatctgacttcttaaggg
tcggggatttccctgggctcgactgacatgctctgctaatgctttagaaa
actgaagaatctgaagctgctgtgggagtaagatctgtaatctataacaa
aatagtttaataatcacttgagaggatttaacaggttcgtatctcaaatt
ccagacctggccagggacacataagaagaggaatgatatagcctattaat
aaatagacggaaataattataaggcaaaggtatatttggtttgtatgtat
ttatttatattttacacactttaagacaacaccttacaatatatccctga
ttagtccagaacttgttagatcgaccagactggcttcagagttttataat
tcctcttccctctgcttcttgaattttgtaatttatagtcatatactacc
atgcccaactaaggcatttgaaaaatgcatataaacatatatttttcttc
tttaagactcaaaactgacattgtcttgtttatcattagtccctccaagt
gaatttttaaaaaagaaagaacaaatgataatgatgagctagagaacatg
aacagaaggaaagccaagagcttgaaaggttaactgtgtttaaatgcatg
catcatccaacaacagcggatgaattctcctgaaagcatagtgtcattaa
aatctcaagcttggggctagagagagagagagctctgtgttgaaagcaca
tactgctcttcacatgtggagtccatttcccagcacaggcatcaagtggc
tcacaaccacccatatcttcagctccagggtatctgattccttcttctgg
ccatccccctgtacaaatgacccaatgccattaatatgcattgaataccc
aaatccatcttcaaaaaaaatcctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75981016_75981534
seq2: B6Ng01-088P10.b_45_563 (reverse)

seq1  GGAAGGAGGTCACCATGGGGTCGGTGGATCTTGAACGCATGGCCATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGTCACCATGGGGTCGGTGGATCTTGAACGCATGGCCATGAGG  50

seq1  GCTGGCCTGATAGAGTGGGAACAGCAAAAGCGGAACATGGCAAGCGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGATAGAGTGGGAACAGCAAAAGCGGAACATGGCAAGCGATAT  100

seq1  CTCAGGGAGCACCATTGGTAAGTAGACAAAATAGCATAGAGAGATGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGCACCATTGGTAAGTAGACAAAATAGCATAGAGAGATGATGC  150

seq1  TATCTGCCCAGCTATAGTAATTTAAAGCTTAATATAAATCTGAAGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCCAGCTATAGTAATTTAAAGCTTAATATAAATCTGAAGGTCTC  200

seq1  TGTGTCTTATTTGTCAACCAAATAGTCTGAAATGGGATAGAAACTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTATTTGTCAACCAAATAGTCTGAAATGGGATAGAAACTCCTAA  250

seq1  TGGATATTTAAAGGCAACAGGCTGCGACTAACCCCCAGAAAACTATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTAAAGGCAACAGGCTGCGACTAACCCCCAGAAAACTATTAAC  300

seq1  CACAACAATGCCCCCTGTATGAGTGTATTTAAGGGATTTTTTTTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAATGCCCCCTGTATGAGTGTATTTAAGGGATTTTTTTTTTTTTA  350

seq1  GTAAGTATCAATTCAAAGAAACAGAAAGCAAATGAATAATATCTTAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATCAATTCAAAGAAACAGAAAGCAAATGAATAATATCTTAGGGT  400

seq1  ATGGATGTGAAAATTGACTCTAGATTGATGTGAAAACCCATTTCCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGAAAATTGACTCTAGATTGATGTGAAAACCCATTTCCTATGA  450

seq1  ACTGAAATGATCCAGAACACAATCTTGATGGTTTTATCTGATATACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGATCCAGAACACAATCTTGATGGTTTTATCTGATATACATTT  500

seq1  GCTGAAAAGAATGGAATTC  519
      |||||||||||||||||||
seq2  GCTGAAAAGAATGGAATTC  519

seq1: chr12_75792154_75793280
seq2: B6Ng01-088P10.g_68_1194

seq1  GAATTCACAGGCTGGGAGACTTGGTGATCCAACCATGGCTTATTTGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCTGGGAGACTTGGTGATCCAACCATGGCTTATTTGGCAG  50

seq1  GCCTGTAATTATAGTGCATTAAGGGATACAAAAGCTCTAGGACTGGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAATTATAGTGCATTAAGGGATACAAAAGCTCTAGGACTGGATAA  100

seq1  GTACCAGAAACCTCTCTTGTCTTTTATTATCTAGGTTTCCAAGGTGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAACCTCTCTTGTCTTTTATTATCTAGGTTTCCAAGGTGATGG  150

seq1  GAGTGTAGGAAGAATTAGGAAGAGAGTGGAAGAGGAAAGTGTAATATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGAAGAATTAGGAAGAGAGTGGAAGAGGAAAGTGTAATATTGT  200

seq1  GGCTAATCATAGTTATAAAACTTTTTTCAAAGCATCTGACTTCTTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCATAGTTATAAAACTTTTTTCAAAGCATCTGACTTCTTAAGGG  250

seq1  TCGGGGATTTCCCTGGGCTCGACTGACATGCTCTGCTAATGCTTTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGATTTCCCTGGGCTCGACTGACATGCTCTGCTAATGCTTTAGAAA  300

seq1  ACTGAAGAATCTGAAGCTGCTGTGGGAGTAAGATCTGTAATCTATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAATCTGAAGCTGCTGTGGGAGTAAGATCTGTAATCTATAACAA  350

seq1  AATAGTTTAATAATCACTTGAGAGGATTTAACAGGTTCGTATCTCAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAATAATCACTTGAGAGGATTTAACAGGTTCGTATCTCAAATT  400

seq1  CCAGACCTGGCCAGGGACACATAAGAAGAGGAATGATATAGCCTATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGGCCAGGGACACATAAGAAGAGGAATGATATAGCCTATTAAT  450

seq1  AAATAGACGGAAATAATTATAAGGCAAAGGTATATTTGGTTTGTATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACGGAAATAATTATAAGGCAAAGGTATATTTGGTTTGTATGTAT  500

seq1  TTATTTATATTTTACACACTTTAAGACAACACCTTACAATATATCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATTTTACACACTTTAAGACAACACCTTACAATATATCCCTGA  550

seq1  TTAGTCCAGAACTTGTTAGATCGACCAGACTGGCTTCAGAGTTTTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCAGAACTTGTTAGATCGACCAGACTGGCTTCAGAGTTTTATAAT  600

seq1  TCCTCTTCCCTCTGCTTCTTGAATTTTGTAATTTATAGTCATATACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCTCTGCTTCTTGAATTTTGTAATTTATAGTCATATACTACC  650

seq1  ATGCCCAACTAAGGCATTTGAAAAATGCATATAAACATATATTTTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAACTAAGGCATTTGAAAAATGCATATAAACATATATTTTTCTTC  700

seq1  TTTAAGACTCAAAACTGACATTGTCTTG-TTATCATTAGTCCCTCCAAGT  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAAGACTCAAAACTGACATTGTCTTGTTTATCATTAGTCCCTCCAAGT  750

seq1  GAATTTTTAAAAAAGAAAGAACAAATGATAAATGATGAGCTAGAGAACAT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTTTTAAAAAAGAAAGAACAAATGAT-AATGATGAGCTAGAGAACAT  799

seq1  GAACAGAAGGAAAGCCAAGAGCTTGAAAAGGTTAACTGTGTTTAAATGCA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAACAGAAGGAAAGCCAAGAGCTTG-AAAGGTTAACTGTGTTTAAATGCA  848

seq1  TGCATCATCCAACAACAGCGGATGAA-TCT-CTGAAAGCATAGTGTCATT  897
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TGCATCATCCAACAACAGCGGATGAATTCTCCTGAAAGCATAGTGTCATT  898

seq1  AAAATCTCAAAGCTTGGGGCTAGAGAGAGAGAGAGCTCTGTGTTTGAAAG  947
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATCTC-AAGCTTGGGGCTAGAGAGAGAGAGAGCTCTGTG-TTGAAAG  946

seq1  CACATACTGCTCTTCACAATGTGGAGTTCCATTCCCAGCACAGGCATCAA  997
      ||||||||||||||||| ||||||||| |  |||||||||||||||||||
seq2  CACATACTGCTCTTCAC-ATGTGGAGTCCATTTCCCAGCACAGGCATCAA  995

seq1  GTGGCTCACAACCACCCATATCTTCAGCTCCAGGGTATCTGATTCCTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCACCCATATCTTCAGCTCCAGGGTATCTGATTCCTTCT  1045

seq1  TCTGG-CATCCCCCTGTACAAATGACCAAATG-CAT--ATATGCATAGAA  1093
      ||||| ||||||||||||||||||||| |||| |||  |||||||| |||
seq2  TCTGGCCATCCCCCTGTACAAATGACCCAATGCCATTAATATGCATTGAA  1095

seq1  TACCAAAAATCCATCTTCAAAAAAAAATCCTGAA  1127
      ||||  |||||||||||| |||||||||||||||
seq2  TACC-CAAATCCATCTTC-AAAAAAAATCCTGAA  1127