BAC Information

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BAC

Clone NameB6Ng01-088P18
Chromosome12 (Build37)17 (Build37)
Map Location 113,119,733 - 113,120,91386,528,893 - 86,528,966
singlet/doubletsingletsinglet
Overlap genePpp1r13b
Upstream gene2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21
Downstream geneLOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P18.bB6Ng01-088P18.g
ACCDH901689DH901690
length1,186972
definitionDH901689|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P18, 5' end.DH901690|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,119,733 - 113,120,913)(86,528,893 - 86,528,966)
sequence
gaattcacgctatcatttataacagccaaaaatagaaatagcccaaactt
acaaagataatttagaaattttacttatgtttctgtgtctgccacctgtg
tgtacatgcctatggaggccagcagagagggactgacagagcccatggag
ctggaattcaaggcagctgtaagccaccagctatgggcatcatcttccta
aagaacaacaagcactttgtactgctgagccattcctccagtcctaactg
cccaaacttactgttgcaaagtttttatttatttatttactgtatatgag
tacactgtagctgtactgatggttgtgagtcatcatgtggttgctgggaa
ttgaactcaggacctttggaagagcagtcagtgctcttaaccgctgagcc
atctctccagcccagcccagacttacaaatggctgaatactatgtaatgt
actctgaacttagattattacttggtggtggtgcacacctttaatgccag
cacttgggagtcagaggcaggcagatctctgagttgccagtctggtctac
agagtgagttccaggacagccagggctacacagagaaactctgtctcaaa
aaacaagcgcaaacaaaaaagaataattctattcatatgaaatgcccgga
gcaaactacccatgaagacaggaagcagactagtggctgccaggagctgc
agggacagttgataagaatatggtttctttggggagatgaagatataaat
aactagatagccataatgatggtacaattgtggatgtttttaaaagccca
gaactatgtgattatgtatcaataaaacttattaaaacattcttagttat
gccaattcaatctatcgatattttttctcaatgaagcagctttaactatt
ataacaggcattgtaccactggctcatatcccaggaatcaggagaccaag
aggcaaggagattgccgaggttgaggctagtctgggctacacagctagac
attttctcaaacaactcattggtataattaacttcctttgtatttttttt
tcttcctcctgggtatataaaaacttataataacacatatccctatttct
gtcatgtctgtacacaacaaatttttcttttttgtttagtaaggaaatag
gccttcaacaaagacaattagcttaaggatatacct
gaattcagctggctacacagagaaaccctatcttgagaaaaccgaaaaac
caaaacaaaacaaaatggaattcaacgactatcagagccatttgctattc
tgaattgagattattaattcattctggtcaggggggctgaaagtcagcca
caatcataagaggcaacagtgaagggaaacacattactgggacagctgat
gctgggcagctggtgcagggaagctggagctaagaaattagtagtgactg
agaagagcccagcatcaccgaggtggaatcttttgggaagtgttttctga
aagtcagcatacagaagctgcgttccagttatgaccaaagttgtaccttg
tgctacagctgaactcagtagtgtaaacgtcccaatatggagctggtttt
gagaacatggagagatcatggagaacagctgaggcttggtgctgctgagg
tcaggagaggccactggggaagacacaacccagttgtaggagaagacccc
agcattttgcagatgtcagtagaatgggtgatcccaagagcagcagtgga
gtggagccactggagcccagaagacaagctgcgtgtgctgtagagggcag
agctggtgaagccagccaagctccttggagaagtccagaagatttcgagt
gaaccccagataactggacactgaattcttacactgctggggttgggttt
tgcttggctcggatcatgactgtgccctgcttcttccttcttgaagaagg
tattgaattttcatttttacagaagcccacagccaaaagactttgacctt
tttaaaaagagattttgaatttttagaaagattagatagtttaaagaaac
tgacactttaatgtgttttgaatttgtaaagaccatggaagttttaaagt
tatttacatttctaacgtgagttctttgggatgaataaggaaagaaagtt
gtggcttactagtgatggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113119733_113120913
seq2: B6Ng01-088P18.b_48_1233

seq1  GAATTCACGCTATCATTTATAACAGCCAAAAATAGAAATAGCCCAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCTATCATTTATAACAGCCAAAAATAGAAATAGCCCAAACTT  50

seq1  ACAAAGATAATTTAGAAATTTTACTTATGTTTCTGTGTCTGCCACCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAATTTAGAAATTTTACTTATGTTTCTGTGTCTGCCACCTGTG  100

seq1  TGTACATGCCTATGGAGGCCAGCAGAGAGGGACTGACAGAGCCCATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGCCTATGGAGGCCAGCAGAGAGGGACTGACAGAGCCCATGGAG  150

seq1  CTGGAATTCAAGGCAGCTGTAAGCCACCAGCTATGGGCATCATCTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCAAGGCAGCTGTAAGCCACCAGCTATGGGCATCATCTTCCTA  200

seq1  AAGAACAACAAGCACTTTGTACTGCTGAGCCATTCCTCCAGTCCTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACAAGCACTTTGTACTGCTGAGCCATTCCTCCAGTCCTAACTG  250

seq1  CCCAAACTTACTGTTGCAAAGTTTTTATTTATTTATTTACTGTATATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTTACTGTTGCAAAGTTTTTATTTATTTATTTACTGTATATGAG  300

seq1  TACACTGTAGCTGTACTGATGGTTGTGAGTCATCATGTGGTTGCTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTAGCTGTACTGATGGTTGTGAGTCATCATGTGGTTGCTGGGAA  350

seq1  TTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCC  400

seq1  ATCTCTCCAGCCCAGCCCAGACTTACAAATGGCTGAATACTATGTAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCAGCCCAGACTTACAAATGGCTGAATACTATGTAATGT  450

seq1  ACTCTGAACTTAGATTATTACTTGGTGGTGGTGCACACCTTTAATGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAACTTAGATTATTACTTGGTGGTGGTGCACACCTTTAATGCCAG  500

seq1  CACTTGGGAGTCAGAGGCAGGCAGATCTCTGAGTTGCCAGTCTGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGTCAGAGGCAGGCAGATCTCTGAGTTGCCAGTCTGGTCTAC  550

seq1  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAA  600

seq1  AAACAAGCGCAAACAAAAAAGAATAATTCTATTCATATGAAATGCCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCGCAAACAAAAAAGAATAATTCTATTCATATGAAATGCCCGGA  650

seq1  GCAAACTACCCATGAAGACAGGAAGCAGACTAGTGGCTGCCAGGAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTACCCATGAAGACAGGAAGCAGACTAGTGGCTGCCAGGAGCTGC  700

seq1  AGGGACAGTTGATAAGAATATGGTTTCTTTGGGGAGATGAAGATATAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGTTGATAAGAATATGGTTTCTTTGGGGAGATGAAGATATAAAT  750

seq1  AACTAGATAGCCATAATGATGGTACAATTGTGGATGTTTTTAAAAGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATAGCCATAATGATGGTACAATTGTGGATGTTTTTAAAAGCCCA  800

seq1  GAACTATGTGATTATGTATCAATAAAACTTATTAAAACATTCTTAGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGTGATTATGTATCAATAAAACTTATTAAAACATTCTTAGTTAT  850

seq1  GCCAATTCAATCTATCGATATTTTTTCTCAATGAAGCAGCTTTAACTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCAATCTATCGATATTTTTTCTCAATGAAGCAGCTTTAACTATT  900

seq1  ATAACAGGGCATTGTACCACTGGCTCATATCCCAGGAATCAGGAGACCAA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACA-GGCATTGTACCACTGGCTCATATCCCAGGAATCAGGAGACCAA  949

seq1  GAGGCAAGGAGATTGCCGAGGTTGAGGCTAGTCTGGGCTACACAGCTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGGAGATTGCCGAGGTTGAGGCTAGTCTGGGCTACACAGCTAGA  999

seq1  CATTTTCTCAAACAACTCATT-GTATTATTTACTT-CTTTGTA-TTTTTT  1047
      ||||||||||||||||||||| |||| ||| |||| ||||||| ||||||
seq2  CATTTTCTCAAACAACTCATTGGTATAATTAACTTCCTTTGTATTTTTTT  1049

seq1  TTCTTCCTTCCTGGTA-ATATAAACTTATAATAACACATAT-CCTA-TTC  1094
      |||||||| |  |||| ||| |||||||||||||||||||| |||| |||
seq2  TTCTTCCTCCTGGGTATATAAAAACTTATAATAACACATATCCCTATTTC  1099

seq1  TGTCATGTCTGTACACACAAAAATTTTCTTTTT--GTTAGTAGGAAAATA  1142
      |||||||||||||||||  ||| ||||||||||   |||||| | |||||
seq2  TGTCATGTCTGTACACAACAAATTTTTCTTTTTTGTTTAGTAAGGAAATA  1149

seq1  GGGCTTAAAAACAAAGACAATTAAGCTAAGGATATACCT  1181
      || |||   ||||||||||||||   |||||||||||||
seq2  GGCCTT--CAACAAAGACAATTAGCTTAAGGATATACCT  1186

seq1: chr17_86528893_86528966
seq2: B6Ng01-088P18.g_79_143

seq1  GGCTACACAGAGAAACCCTGTCTCAAAATAACAAAAAACAAACAAAAACC  50
      ||||||||||||||||||| |||  | | |||           |||||||
seq2  GGCTACACAGAGAAACCCTATCTTGAGAAAAC---------CGAAAAACC  41

seq1  AAAACAAAACCTCAAAAT---ATTCAA  74
      |||||||||   ||||||   ||||||
seq2  AAAACAAAA---CAAAATGGAATTCAA  65