BAC Information

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BAC

Clone NameB6Ng01-089C14
Chromosome12 (Build37)
Map Location 116,843,783 - 116,844,974
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328
Downstream geneIghv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C14.bB6Ng01-089C14.g
ACCDH901810DH901811
length1,1641,255
definitionDH901810|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C14, 5' end.DH901811|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggaacactcacagacaggagtccacagaaagagcaagaacca
ctgtggtactcatagcaaaattaacacttcaaaaatatttgcattgagaa
ggaagtggaaatcaagcaaatgtattctgaaacacaatctgtttcccaac
ctgcaggtacatgcatttaatgggaagaaggaatagagaaaattatcatg
gaccatgatcctaatgcatggagaatgtgtgtgcttagaaagttttacct
ctccctgtgtagctttcatccaggatgttcttattcctgcaaaggcatgc
tagctaagctttacagtagttgatattttcactaatgaaggagatatttg
taatattgtcccagaaatgggggaaacaaatagcactatgtaggaatatg
tgattaaatatgtgtatttaattttctgaagaatagcaactcatgttaaa
acaaaaatatgtactacatgaattcacattattcatatatattgtaatct
aaattcaagttagcaaattggatgcacctaatactacagcatagaaggag
gaggaccaattgaattcatctcctcttttccattactaataagaatccat
gtgaagtcctgtgaattgtcagttcacagggtaacatcctcagggtatta
gtgaattctgacaatgcctactatccagaggactagcttgttttatcttg
acattccagaactcctgaagagagagtaatgctgggtaatatcaataatg
ctgttcttcatacttcaatcatgaaatgctgatggagctcatagtgtgca
atgcacaggagttcatgcctccttaagtagacatcctccccttttctttt
tatgtgttttatatagaactttttatttaaaacttagatacatttaaaat
aagttagcttttatcagaaaatactgttcaaatcatgtattctatcacaa
actggaagctagtattttaatgacttttatctttttttatattttttcat
tagatgtttctcatttacattccaaatgtatcccctttcctagtttctct
ctgaaaaaccctatacctttccctccccctgctccaaacaccactccaca
ttcggtcctggcattccctaactgggctgaagttcgaaaacaagaatcct
ctcccactggtagc
gaattcaacagattgggaaaagatttttactcaacctgcaacttataagg
ggctaataaccaatatgtacaaagaactcaagaagttaggctccagagaa
ccaaataaccctattaaaaatgttgtaaagaactaaacatagaattctca
agtgaggaatatcaattggacaaaatgaaattaaagaaatgttcaacatc
tttattcatcagggaattgcaaatagaaacaaccctgagattccacctca
cacccgtcagaattgctaagattaaatactcaagtgatagtagatgctga
tgagcatgtggagaaagaggaaaactcctccaatgccagtgggattacaa
gctggtatcataactatagaaatcagtctgacagttcctcagaaaacttg
acatagtaacacctgaggacctagcaatacaatttttgggcatatgccaa
gaagatgctccaatatgtaataagggttcatgctccactatgttcataga
agccatatttataatgacttggatctagaaagaacctagatgttcttaaa
caaaggaatggattcagaaaatatgggacatttacagaatgtagtactat
tttgctattaaaaatgatgaattcatgaaattctcatgtaaatggataga
attagaaaatatcatcctgagtgaggtaacccaatcacaaaagaaacatt
gtatgaactcactgataactggatattagcctaaaagggccaaataacca
ggatacaattcatagaccccatgaagctcattaagaaggaagatcaaagt
atggatgcttcggtccttcttacaaggagaacaaaatactcacaggagaa
aatatggagataaagtatagaacagagaatgaaagagaggccacccaggg
atggtcccacctggggattcatcacatacataggtaccaaaccagacact
ttgtggatgcaagaattggatgttgaaagtagcctgatatgactgtctcc
tgagaggccatgccagagccttacaaatacagaggtgtatgtcacagtta
accattttattgaagcactggggttccacagaggagttgaagaagactga
acaagttaaattgtttgcaccgtaggatacacacaatttaccaccatgag
cccagaactccaggactattcatcatgaaggattatgtccctcgcattga
acaagaatgccgtgccattacatagagggagctctggtttataatagagc
gctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116843783_116844974
seq2: B6Ng01-089C14.b_47_1210

seq1  GAATTCCTGGAACACTCACAGACAGGAGTCCACAGAAAGAGCAAGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAACACTCACAGACAGGAGTCCACAGAAAGAGCAAGAACCA  50

seq1  CTGTGGTACTCATAGCAAAATTAACACTTCAAAAATATTTGCATTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTACTCATAGCAAAATTAACACTTCAAAAATATTTGCATTGAGAA  100

seq1  GGAAGTGGAAATCAAGCAAATGTATTCTGAAACACAATCTGTTTCCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGAAATCAAGCAAATGTATTCTGAAACACAATCTGTTTCCCAAC  150

seq1  CTGCAGGTACATGCATTTAATGGGAAGAAGGAATAGAGAAAATTATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTACATGCATTTAATGGGAAGAAGGAATAGAGAAAATTATCATG  200

seq1  GACCATGATCCTAATGCATGGAGAATGTGTGTGCTTAGAAAGTTTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGATCCTAATGCATGGAGAATGTGTGTGCTTAGAAAGTTTTACCT  250

seq1  CTCCCTGTGTAGCTTTCATCCAGGATGTTCTTATTCCTGCAAAGGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGTAGCTTTCATCCAGGATGTTCTTATTCCTGCAAAGGCATGC  300

seq1  TAGCTAAGCTTTACAGTAGTTGATATTTTCACTAATGAAGGAGATATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGCTTTACAGTAGTTGATATTTTCACTAATGAAGGAGATATTTG  350

seq1  TAATATTGTCCCAGAAATGGGGGAAACAAATAGCACTATGTAGGAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTCCCAGAAATGGGGGAAACAAATAGCACTATGTAGGAATATG  400

seq1  TGATTAAATATGTGTATTTAATTTTCTGAAGAATAGCAACTCATGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAATATGTGTATTTAATTTTCTGAAGAATAGCAACTCATGTTAAA  450

seq1  ACAAAAATATGTACTACATGAATTCACATTATTCATATATATTGTAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATGTACTACATGAATTCACATTATTCATATATATTGTAATCT  500

seq1  AAATTCAAGTTAGCAAATTGGATGCACCTAATACTACAGCATAGAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGTTAGCAAATTGGATGCACCTAATACTACAGCATAGAAGGAG  550

seq1  GAGGACCAATTGAATTCATCTCCTCTTTTCCATTACTAATAAGAATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAATTGAATTCATCTCCTCTTTTCCATTACTAATAAGAATCCAT  600

seq1  GTGAAGTCCTGTGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCCTGTGAATTGTCAGTTCACAGGGTAACATCCTCAGGGTATTA  650

seq1  GTGAATTCTGACAATGCCTACTATCCAGAGGACTAGCTTGTTTTATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCTGACAATGCCTACTATCCAGAGGACTAGCTTGTTTTATCTTG  700

seq1  ACATTCCAGAACTCCTGAAGAGAGAGTAATGCTGGGTAATATCAATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAGAACTCCTGAAGAGAGAGTAATGCTGGGTAATATCAATAATG  750

seq1  CTGTTCTTCATACTTCAATCATGAAATGCTGATGGAGCTCATAGTGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCATACTTCAATCATGAAATGCTGATGGAGCTCATAGTGTGCA  800

seq1  ATGCACAGGAGTTCATGCCTCCTTAAGTAGACATCCTCCCCTTTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGGAGTTCATGCCTCCTTAAGTAGACATCCTCCCCTTTTCTTTT  850

seq1  TATGTGTTTTATATAGAACTTTTTATTTAAAACTTAGATACATTTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTTATATAGAACTTTTTATTTAAAACTTAGATACATTTAAAAT  900

seq1  AAGTTAGCTTTTATCAGAAAAATACTGTTCAAATCATGTTATTCTATCAC  950
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AAGTTAGCTTTTATCAG-AAAATACTGTTCAAATCATG-TATTCTATCAC  948

seq1  AAACTGGAAGCTAGTTATTTTTAATGACTTTTTATCTTTTTTTATATTTT  1000
      |||||||||||||||   |||||||||| |||||||||||||||||||||
seq2  AAACTGGAAGCTAGT--ATTTTAATGAC-TTTTATCTTTTTTTATATTTT  995

seq1  TTCATTAGATGTTTTCTTCATTTACATTCCAAATGTTATCCCCTTTCCTA  1050
      ||||||||||||||   |||||||||||||||||| ||||||||||||||
seq2  TTCATTAGATGTTT--CTCATTTACATTCCAAATG-TATCCCCTTTCCTA  1042

seq1  GTTTCCTCTCTGAAAATACCCTATACCCTTTCCCCTCCCCCTGCTCCACA  1100
      |||| ||||||||||| ||||||||||  || |||||||||||||||| |
seq2  GTTT-CTCTCTGAAAA-ACCCTATACC--TTTCCCTCCCCCTGCTCCA-A  1087

seq1  ACCAACCCACTTCCACTTCCTGTCCCTTGCATTCCCCTATACTGGGGCCT  1150
      ||    |||| ||||| | | || ||| ||||| ||||| ||||||  ||
seq2  AC---ACCAC-TCCACATTCGGT-CCTGGCATT-CCCTA-ACTGGG--CT  1128

seq1  AGAATGTTCGAAAGACCAAGGATCTCTTCTCCCACTGGTAGC  1192
       ||| |||||||  | |||| |  || |||||||||||||||
seq2  -GAA-GTTCGAA--AACAAGAA--TCCTCTCCCACTGGTAGC  1164