BAC Information

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BAC

Clone NameB6Ng01-089C18
Chromosome12 (Build37)
Map Location 55,975,672 - 56,100,622
singlet/doubletdoublet
Overlap geneBaz1a
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2
Downstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C18.bB6Ng01-089C18.g
ACCDH901818DH901819
length1,0051,115
definitionDH901818|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C18, 5' end.DH901819|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,099,615 - 56,100,622)(55,975,672 - 55,976,791)
sequence
gaattccaggccagccagtgctacacagtgagatcctgtctcagtaaata
aacaaaggagaagaagaaacccagcaaaccctagaattcctttcctcaaa
gaacttacttcctgttcgggccataagccaacttgggcattgggcagctg
agcagttttcttctgggctatgactcagggacctgggcgcctcaattttc
ctctcatcttcttgtgccattgtcctctaggtttgggggacctttctagt
tatttggtgggaaaaggagaggggagcgcgaaggtgtttgagaattgtct
ctagcagaggcaaccgctgctggttcacacagtctacggtctgaatgcac
ccacatcggcccaagtaactgctttagggaagtgtgtacccaggaggaaa
ataagcgggcagggcgctgtctggcgggaaatgctgcgcagttctgtgtc
atcacagtgggggcagaggtggtggtggctgagactgggtggcagtcctc
acagaacaggaagtagaggtgacaagtaaggtccagacagcagcaagcac
gcggagttcgggtaaggtgtgcccagcagaagagaagtgcaaacacctca
gattgggctcattttaaagacatcttctctcagttttccaaatgatgact
gctcctatataggaacactggtaatgaaacgttttgaacctccattaata
attcttagttgactgttggttttccagtcagattattagatcattattac
ctaatgaaaaaaatccctcctcttgcagctgaagaaattgatgactcagt
gggtaaaatgcttgccacgcaattgtgaggctgtgagtccccagaatcca
cataaaggcagatgtagtggcacacatctgtagttccacggttcctatgg
tgagatgagaggtggagacaggaggatcacagaagcttgaagcccagtac
gcctggcttatgcagggcgaaaaaagactatctcataaggtgggaggcaa
agacg
gaattcactacttagcccagggtggtcttgaattcatagcaatcctcctg
cctcagtggtaagaccacaaccagaggtcaccacatccatctagttgagg
ttttataataagtggcattcgaatctgaactgtgtccgtgagctagtaag
ttaataactcgcagctggtgtgcagttacaccattgaagctggcgggcat
agctggcgtttgaggccctgctgaagagcaattcaccactgctgctgcca
tcatgtgactcagactgctaagttcctttactgtgaggtcatgctcctga
gttagaaagaactagcagtgagatgtgtaaggcccacagtgggctgtgtg
gatcagagagtgagccacagagatcagaatacagcccatggcgagtgctg
tttattctctagttctaagttcagcttgaatgtcggagagatgtaacccc
ctcaacagtttgccagcagtgtagggggtaagaagcagcaggcaggtgag
ggtgacacataggcctttagtctcagctcaagaggcagaggcagaggcag
ggaggtctcagagttcaaggccaggatggtcaacagagaaagttccagga
cagccaggaatggtcttttaccctgtctcgaaaaccaaagaataaagcat
atgacagggctgggagacatagctcaatggttaagagcatatactgttct
tccagaggacccaaaccttttctacattctgcaggcacctgacctcaaat
gtatatgcacccatgcagacactcatgtcttatgattttactgctgtgaa
cagaccccatggccaagacaactttttttttaaagacttatttattttat
gtgagtacactgttgctgtcttcagacacaccagaagagggcatcagacc
ccgttacagatggtgtgagccaccatgtggttgctgggaactgacttcag
aacttcctgagagcagtgctcttaaccactgaaccatctctccagccacc
ctttgtttggttttgtttttgttttcaagacaggaattcctcggataact
ctggcgtgtctgggacttacttgtaaacagcctggcctcaaacctagaag
tcccagatctgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56099615_56100622
seq2: B6Ng01-089C18.b_46_1050 (reverse)

seq1  CGTCTTTGCCTCCCACCTTACTGAGATAGTCTTTTTTCGCCCCTGCATAA  50
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  CGTCTTTGCCTCCCACCTTA-TGAGATAGTCTTTTTTCG-CCCTGCATAA  48

seq1  GCCAGGCGTACTGGGCTTCAAGCTTCTGGTGATCCTCCTGTCTCCACCTC  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCCAGGCGTACTGGGCTTCAAGCTTCT-GTGATCCTCCTGTCTCCACCTC  97

seq1  TCATCTCACCATAGGAACCGTGGAACTACAGATGTGTGCCACTACATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCACCATAGGAACCGTGGAACTACAGATGTGTGCCACTACATCTG  147

seq1  CCTTTATGTGGATTCTGGGGACTCACAGCCTCACAATTGCGTGGCAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGTGGATTCTGGGGACTCACAGCCTCACAATTGCGTGGCAAGCA  197

seq1  TTTTACCCACTGAGTCATCAATTTCTTCAGCTGCAAGAGGAGGGATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCACTGAGTCATCAATTTCTTCAGCTGCAAGAGGAGGGATTTTT  247

seq1  TTCATTAGGTAATAATGATCTAATAATCTGACTGGAAAACCAACAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGGTAATAATGATCTAATAATCTGACTGGAAAACCAACAGTCAA  297

seq1  CTAAGAATTATTAATGGAGGTTCAAAACGTTTCATTACCAGTGTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTATTAATGGAGGTTCAAAACGTTTCATTACCAGTGTTCCTAT  347

seq1  ATAGGAGCAGTCATCATTTGGAAAACTGAGAGAAGATGTCTTTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGCAGTCATCATTTGGAAAACTGAGAGAAGATGTCTTTAAAATGA  397

seq1  GCCCAATCTGAGGTGTTTGCACTTCTCTTCTGCTGGGCACACCTTACCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATCTGAGGTGTTTGCACTTCTCTTCTGCTGGGCACACCTTACCCG  447

seq1  AACTCCGCGTGCTTGCTGCTGTCTGGACCTTACTTGTCACCTCTACTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGCGTGCTTGCTGCTGTCTGGACCTTACTTGTCACCTCTACTTCC  497

seq1  TGTTCTGTGAGGACTGCCACCCAGTCTCAGCCACCACCACCTCTGCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTGAGGACTGCCACCCAGTCTCAGCCACCACCACCTCTGCCCCC  547

seq1  ACTGTGATGACACAGAACTGCGCAGCATTTCCCGCCAGACAGCGCCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATGACACAGAACTGCGCAGCATTTCCCGCCAGACAGCGCCCTGC  597

seq1  CCGCTTATTTTCCTCCTGGGTACACACTTCCCTAAAGCAGTTACTTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTATTTTCCTCCTGGGTACACACTTCCCTAAAGCAGTTACTTGGGC  647

seq1  CGATGTGGGTGCATTCAGACCGTAGACTGTGTGAACCAGCAGCGGTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGGGTGCATTCAGACCGTAGACTGTGTGAACCAGCAGCGGTTGCC  697

seq1  TCTGCTAGAGACAATTCTCAAACACCTTCGCGCTCCCCTCTCCTTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGAGACAATTCTCAAACACCTTCGCGCTCCCCTCTCCTTTTCCC  747

seq1  ACCAAATAACTAGAAAGGTCCCCCAAACCTAGAGGACAATGGCACAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAACTAGAAAGGTCCCCCAAACCTAGAGGACAATGGCACAAGAA  797

seq1  GATGAGAGGAAAATTGAGGCGCCCAGGTCCCTGAGTCATAGCCCAGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGGAAAATTGAGGCGCCCAGGTCCCTGAGTCATAGCCCAGAAGA  847

seq1  AAACTGCTCAGCTGCCCAATGCCCAAGTTGGCTTATGGCCCGAACAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTCAGCTGCCCAATGCCCAAGTTGGCTTATGGCCCGAACAGGAA  897

seq1  GTAAGTTCTTTGAGGAAAGGAATTCTAGGGTTTGCTGGGTTTCTTCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTCTTTGAGGAAAGGAATTCTAGGGTTTGCTGGGTTTCTTCTTCT  947

seq1  CCTTTGTTTATTTACTGAGACAGGATCTCACTGTGTAGCACTGGCTGGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTTATTTACTGAGACAGGATCTCACTGTGTAGCACTGGCTGGCC  997

seq1  TGGAATTC  1008
      ||||||||
seq2  TGGAATTC  1005

seq1: chr12_55975672_55976791
seq2: B6Ng01-089C18.g_67_1181

seq1  GAATTCACTACTTAGCCCAGGGTGGTCTTGAATTCATAGCAATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACTTAGCCCAGGGTGGTCTTGAATTCATAGCAATCCTCCTG  50

seq1  CCTCAGTGGTAAGACCACAACCAGAGGTCACCACATCCATCTAGTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGTAAGACCACAACCAGAGGTCACCACATCCATCTAGTTGAGG  100

seq1  TTTTATAATAAGTGGCATTCGAATCTGAACTGTGTCCGTGAGCTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAAGTGGCATTCGAATCTGAACTGTGTCCGTGAGCTAGTAAG  150

seq1  TTAATAACTCGCAGCTGGTGTGCAGTTACACCATTGAAGCTGGCGGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACTCGCAGCTGGTGTGCAGTTACACCATTGAAGCTGGCGGGCAT  200

seq1  AGCTGGCGTTTGAGGCCCTGCTGAAGAGCAATTCACCACTGCTGCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCGTTTGAGGCCCTGCTGAAGAGCAATTCACCACTGCTGCTGCCA  250

seq1  TCATGTGACTCAGACTGCTAAGTTCCTTTACTGTGAGGTCATGCTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACTCAGACTGCTAAGTTCCTTTACTGTGAGGTCATGCTCCTGA  300

seq1  GTTAGAAAGAACTAGCAGTGAGATGTGTAAGGCCCACAGTGGGCTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAGAACTAGCAGTGAGATGTGTAAGGCCCACAGTGGGCTGTGTG  350

seq1  GATCAGAGAGTGAGCCACAGAGATCAGAATACAGCCCATGGCGAGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGAGTGAGCCACAGAGATCAGAATACAGCCCATGGCGAGTGCTG  400

seq1  TTTATTCTCTAGTTCTAAGTTCAGCTTGAATGTCGGAGAGATGTAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCTAGTTCTAAGTTCAGCTTGAATGTCGGAGAGATGTAACCCC  450

seq1  CTCAACAGTTTGCCAGCAGTGTAGGGGGTAAGAAGCAGCAGGCAGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGTTTGCCAGCAGTGTAGGGGGTAAGAAGCAGCAGGCAGGTGAG  500

seq1  GGTGACACATAGGCCTTTAGTCTCAGCTCAAGAGGCAGAGGCAGAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACATAGGCCTTTAGTCTCAGCTCAAGAGGCAGAGGCAGAGGCAG  550

seq1  GGAGGTCTCAGAGTTCAAGGCCAGGATGGTCAACAGAGAAAGTTCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTCAGAGTTCAAGGCCAGGATGGTCAACAGAGAAAGTTCCAGGA  600

seq1  CAGCCAGGAATGGTCTTTTACCCTGTCTCGAAAACCAAAGAATAAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGAATGGTCTTTTACCCTGTCTCGAAAACCAAAGAATAAAGCAT  650

seq1  ATGACAGGGCTGGGAGACATAGCTCAATGGTTAAGAGCATATACTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGGCTGGGAGACATAGCTCAATGGTTAAGAGCATATACTGTTCT  700

seq1  TCCAGAGGACCCAAACCTTTTCTACATTCTGCAGGCACCTGACCTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGACCCAAACCTTTTCTACATTCTGCAGGCACCTGACCTCAAAT  750

seq1  GTATATGCACCCATGCAGACACTCATGTCTTAGGATTTTACTGCTGTGAA  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTATATGCACCCATGCAGACACTCATGTCTTATGATTTTACTGCTGTGAA  800

seq1  CAGACCCCATGGCCAAGACAACTTTTTTTTTAAAGACTTATTTATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCATGGCCAAGACAACTTTTTTTTTAAAGACTTATTTATTTTAT  850

seq1  GTGAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGCATCAGACC  900

seq1  CCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAACTGAACTCA  950
      ||||||||||||| |||||||||||||||||||||||||||||||  |||
seq2  CCGTTACAGATGG-TGTGAGCCACCATGTGGTTGCTGGGAACTGACTTCA  949

seq1  GAACTTCCTGAAGAGCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCA  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCTG-AGAGCAGTGCTCTTAACCACTGAACCATCTCTCCAGCCA  998

seq1  CCCTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGATTTCTCTGTATAA  1050
      |||||||||| ||||||||||  ||||| |||||||| |||   | ||||
seq2  CCCTTTGTTTGGTTTTGTTTTTGTTTTCAAGACAGGAATTCCTCGGATAA  1048

seq1  CTCTGGC-TGTCCTGGAACTTACTTTGTAGACCAGGCTGGCCTCAAACTC  1099
      ||||||| ||| |||| |||||| ||||| | ||| ||||||||||||  
seq2  CTCTGGCGTGT-CTGGGACTTAC-TTGTA-AACAGCCTGGCCTCAAACCT  1095

seq1  AGAAGTCCCAAGTACTGGGAT  1120
      ||||||||| ||  |||||||
seq2  AGAAGTCCC-AGATCTGGGAT  1115