BAC Information

Click to search

BAC

Clone NameB6Ng01-089I19
Chromosome12 (Build37)
Map Location 53,552,566 - 53,708,947
singlet/doubletdoublet
Overlap geneArhgap5
Upstream geneLOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneAkap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I19.bB6Ng01-089I19.g
ACCDH902100DH902101
length1,1021,146
definitionDH902100|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I19, 5' end.DH902101|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,552,566 - 53,553,665)(53,707,768 - 53,708,947)
sequence
gaattccaataatgtaacatacaggtactgagtggtggatgctaagtcag
gcagacactctcttgtattctggaaaagtaaatgatggctaaggcgtgtt
ctctgcctttggtgctcatggctgtgcctgggacactaactctagactgt
ctaggacataaaataaacatcacaaaggaggtttacttgcattctatggc
aatctggtaaggggtgagtggtttgaccctggcacagagggaaggtacag
gtggcagccgggcagatcccagaaaagcctctgtgggaagagaataactg
ggttgagcctcaaaggataaatgatcatttggcaagtggtaaagggatag
agatcagcatgtcaactgacaactgcatatgccaggtcacaaaggtgtga
gagaacggagaaggttccatgtcgtggtaggacattgtgggagggggtta
aaagatgagccagagacagcaggtagaagctggagtcttatctttaaaaa
tgcaaaacccagaaatttatttgatgtttgcttgaatacattttatatag
aaagatcggaattgtttgtttttggagcccctggtaaatctctgaaccat
aagcgtaccaatccagagacatcagaaacggaagctgcaagcccaatttt
aggactgctgtttaagatttgtctctggtcaaatccaagccactccctta
aaaatacttgaggtgttagagccactgagtgaaaacagctggcgggaagg
agggcatttagattctggcttgttgaattcagaagtaaaatgattgtatt
gatatgggaaacaaaaactctggtgaccacacagaacatgcctagaggcc
aaccaactttagccaaaggagcccaggcaagatctaatgaaattcacatt
tcactttaaacattcatttgtaagatttagggagccctgtgaatccaaag
caagttgaaagctggtgaatttttaagtgttttgctccacacttctagtc
tggatgaagactccacctgagctcttttctgaatggggaacacaatacaa
tttgtctcataccaggtacttcatgggctcctaggttctgggctgtgaag
gg
gaattcaagagcagcttcaccggttatctgatggggaaaaagaagagagg
aaagataatgacaaatgcaaagcagaccttacaaaggccatgagttccag
gggagaactctaagtattcaaaaagatctctcagaaacccacggccctct
caggagctagctcctgctctggtgttttgtaggttctcataatggttgcc
acctggaatccaggctgatcacctcagtctcggaagcttgagcttatcca
tgtcagaggagatgaagcacatccatcataggtgcggtgatgactcagct
cttcctgccaaggaggatgtaaggatttgggttgagtcgcttctctttta
aatgagagcaaaattcctgaacaggaaataacttgcggtggatgttacat
ttttcttgttcttgcttttaaagagtgtcagagcacaggatgttcctttc
ctgtgaataaaaagaactacagccaagttgactttctaccaatcagtgtg
tactatcctgctatggcagaaagacaactcagaagtgtggttgtgaaatg
atagacttaaagtctttttccttcataacccattgaaaaaagtattgact
taacggtactcagtggtgtgaaggaaagagaaatggagctggcctcaaac
actgacaggttctgtgccaatactattcaagggagcttagtctcagtttc
ctttctctgaaaaaatacatctcattatatctaaaaagtcgttgactcta
agatgtatgacagtttgagaaaattacccagtaagtagttttaagtagct
atttttggataaaacaacagaattactgctaatgtgaacaagtaggatta
ttatgacaataatatttactaacaataaagtccaatgttccagaatacaa
aataagttttccttatttaaaaaatctgagaaatccttcaaataatgtct
cctaagctaagtgttaaccatgcctataaactattctacaaaagcaatct
taattcagggtcgactactttaaaggagacccacctactgcaactttctt
aatgctcttagaagatgtaataaaacagtatttccatgaaagactgtgat
accatatacttaggtaaaagcgaatttaaattactgtaatgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53552566_53553665
seq2: B6Ng01-089I19.b_43_1144

seq1  GAATTCCAATAATGTAACATACAGGTACTGAGTGGTGGATGCTAAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAATGTAACATACAGGTACTGAGTGGTGGATGCTAAGTCAG  50

seq1  GCAGACACTCTCTTGTATTCTGGAAAAGTAAATGATGGCTAAGGCGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACTCTCTTGTATTCTGGAAAAGTAAATGATGGCTAAGGCGTGTT  100

seq1  CTCTGCCTTTGGTGCTCATGGCTGTGCCTGGGACACTAACTCTAGACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTTGGTGCTCATGGCTGTGCCTGGGACACTAACTCTAGACTGT  150

seq1  CTAGGACATAAAATAAACATCACAAAGGAGGTTTACTTGCATTCTATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACATAAAATAAACATCACAAAGGAGGTTTACTTGCATTCTATGGC  200

seq1  AATCTGGTAAGGGGTGAGTGGTTTGACCCTGGCACAGAGGGAAGGTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTAAGGGGTGAGTGGTTTGACCCTGGCACAGAGGGAAGGTACAG  250

seq1  GTGGCAGCCGGGCAGATCCCAGAAAAGCCTCTGTGGGAAGAGAATAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCCGGGCAGATCCCAGAAAAGCCTCTGTGGGAAGAGAATAACTG  300

seq1  GGTTGAGCCTCAAAGGATAAATGATCATTTGGCAAGTGGTAAAGGGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGCCTCAAAGGATAAATGATCATTTGGCAAGTGGTAAAGGGATAG  350

seq1  AGATCAGCATGTCAACTGACAACTGCATATGCCAGGTCACAAAGGTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCATGTCAACTGACAACTGCATATGCCAGGTCACAAAGGTGTGA  400

seq1  GAGAACGGAGAAGGTTCCATGTCGTGGTAGGACATTGTGGGAGGGGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGGAGAAGGTTCCATGTCGTGGTAGGACATTGTGGGAGGGGGTTA  450

seq1  AAAGATGAGCCAGAGACAGCAGGTAGAAGCTGGAGTCTTATCTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAGCCAGAGACAGCAGGTAGAAGCTGGAGTCTTATCTTTAAAAA  500

seq1  TGCAAAACCCAGAAATTTATTTGATGTTTGCTTGAATACATTTTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACCCAGAAATTTATTTGATGTTTGCTTGAATACATTTTATATAG  550

seq1  AAAGATCGGAATTGTTTGTTTTTGGAGCCCCTGGTAAATCTCTGAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCGGAATTGTTTGTTTTTGGAGCCCCTGGTAAATCTCTGAACCAT  600

seq1  AAGCGTACCAATCCAGAGACATCAGAAACGGAAGCTGCAAGCCCAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTACCAATCCAGAGACATCAGAAACGGAAGCTGCAAGCCCAATTTT  650

seq1  AGGACTGCTGTTTAAGATTTGTCTCTGGTCAAATCCAAGCCACTCCCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCTGTTTAAGATTTGTCTCTGGTCAAATCCAAGCCACTCCCTTA  700

seq1  AAAATACTTGAGGTGTTAGAGCCACTGAGTGAAAACAGCTGGCGGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTGAGGTGTTAGAGCCACTGAGTGAAAACAGCTGGCGGGAAGG  750

seq1  AGGGCATTTAGATTCTGGCTTGTTGAATTCAGAAGTAAAATGATTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTAGATTCTGGCTTGTTGAATTCAGAAGTAAAATGATTGTATT  800

seq1  GATAT-GGAAACAAAAACTCTGGTGACCACACAGAACATGCCTAGAGGCC  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGAAACAAAAACTCTGGTGACCACACAGAACATGCCTAGAGGCC  850

seq1  AACCAACTTTAGCC-AAGGAGCCCAGGCAAGATCTAATGAAATTCACATT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCAACTTTAGCCAAAGGAGCCCAGGCAAGATCTAATGAAATTCACATT  900

seq1  TCACTTTAAACATTCATTTGTAAGATTTAGGGAGCCCTGTGAATCCAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAAACATTCATTTGTAAGATTTAGGGAGCCCTGTGAATCCAAAG  950

seq1  CAAGTTGAAAGCTGGTGGAATTTTTAAGTGTTTTGCTCCACACTTCCTAG  998
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CAAGTTGAAAGCTGGT-GAATTTTTAAGTGTTTTGCTCCACACTT-CTAG  998

seq1  TCTGGATGAAGACTCCAACCTGAGCTCCTTTCTGAATGTGGAACACAATA  1048
      |||||||||||||||| |||||||||| |||||||||| |||||||||||
seq2  TCTGGATGAAGACTCC-ACCTGAGCTCTTTTCTGAATGGGGAACACAATA  1047

seq1  C-ATTTGTCTCATACCAGGT-CATCTATGGCT-CTAGGTTCTGGTCTGTG  1095
      | |||||||||||||||||| | ||   |||| ||||||||||| |||||
seq2  CAATTTGTCTCATACCAGGTACTTCATGGGCTCCTAGGTTCTGGGCTGTG  1097

seq1  ATGGG  1100
      | |||
seq2  AAGGG  1102

seq1: chr12_53707768_53708947
seq2: B6Ng01-089I19.g_67_1212 (reverse)

seq1  TCCCACATTAACAGTTTAATTTTAAAAATCCTGCTCTTTTACCCTAAAGT  50
      ||||||||| |||||   | ||||||     | | ||||||||   ||||
seq2  TCCCACATT-ACAGT---AATTTAAA-----TTCGCTTTTACC--TAAGT  39

seq1  ATATGTGATCAACCAGTCTTTTCATGGGGAAATACTGGTTTTTATTACAT  100
      |||||  ||||  ||||| ||||||  ||||||||||  |||||||||||
seq2  ATATGGTATCA--CAGTC-TTTCAT--GGAAATACTG--TTTTATTACAT  82

seq1  CTTCTAAGAGGCATTTAGGAAAGTTTGCAGTAGGTGGGTCTCTTTTAAAG  150
      ||||||||| ||| ||| ||||| |||||||||||||||||| |||||||
seq2  CTTCTAAGA-GCA-TTAAGAAAG-TTGCAGTAGGTGGGTCTCCTTTAAAG  129

seq1  TAGTCGAACCTTGAATTAAGATTTGCTTTTGTGAGAATAAGTTTAATAGG  200
      |||||| ||| |||||||||| |||||||||| ||||| ||||| |||||
seq2  TAGTCG-ACCCTGAATTAAGA-TTGCTTTTGT-AGAAT-AGTTT-ATAGG  174

seq1  CATGGTTAACAACTTAGCTTTAGGAGACATTTATTTGAAGGATTTCCTCA  250
      |||||||||| ||||||| |||||||||| ||||||||||||||| ||||
seq2  CATGGTTAAC-ACTTAGC-TTAGGAGACA-TTATTTGAAGGATTT-CTCA  220

seq1  GATTTTTTTAAATAAGGAAAAACTTATTTTTGTATTCTGGAACATTTGGA  300
      || |||||||||||||| |||||||| ||||||||||||||||| |||||
seq2  GA-TTTTTTAAATAAGG-AAAACTTA-TTTTGTATTCTGGAACA-TTGGA  266

seq1  CTTTATTGTTAGTAAATATTATTGTCATAATAATCCTACTTGTTCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTTAGTAAATATTATTGTCATAATAATCCTACTTGTTCACATT  316

seq1  AGCAGTAATTCTGTTGTTTTATCCAAAAATAGCTACTTAAAACTACTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATTCTGTTGTTTTATCCAAAAATAGCTACTTAAAACTACTTAC  366

seq1  TGGGTAATTTTCTCAAACTGTCATACATCTTAGAGTCAACGACTTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATTTTCTCAAACTGTCATACATCTTAGAGTCAACGACTTTTTAG  416

seq1  ATATAATGAGATGTATTTTTTCAGAGAAAGGAAACTGAGACTAAGCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAGATGTATTTTTTCAGAGAAAGGAAACTGAGACTAAGCTCCC  466

seq1  TTGAATAGTATTGGCACAGAACCTGTCAGTGTTTGAGGCCAGCTCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAGTATTGGCACAGAACCTGTCAGTGTTTGAGGCCAGCTCCATTT  516

seq1  CTCTTTCCTTCACACCACTGAGTACCGTTAAGTCAATACTTTTTTCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTCACACCACTGAGTACCGTTAAGTCAATACTTTTTTCAATG  566

seq1  GGTTATGAAGGAAAAAGACTTTAAGTCTATCATTTCACAACCACACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGAAGGAAAAAGACTTTAAGTCTATCATTTCACAACCACACTTCT  616

seq1  GAGTTGTCTTTCTGCCATAGCAGGATAGTACACACTGATTGGTAGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCTTTCTGCCATAGCAGGATAGTACACACTGATTGGTAGAAAGT  666

seq1  CAACTTGGCTGTAGTTCTTTTTATTCACAGGAAAGGAACATCCTGTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGCTGTAGTTCTTTTTATTCACAGGAAAGGAACATCCTGTGCTC  716

seq1  TGACACTCTTTAAAAGCAAGAACAAGAAAAATGTAACATCCACCGCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTCTTTAAAAGCAAGAACAAGAAAAATGTAACATCCACCGCAAGT  766

seq1  TATTTCCTGTTCAGGAATTTTGCTCTCATTTAAAAGAGAAGCGACTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGTTCAGGAATTTTGCTCTCATTTAAAAGAGAAGCGACTCAAC  816

seq1  CCAAATCCTTACATCCTCCTTGGCAGGAAGAGCTGAGTCATCACCGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTTACATCCTCCTTGGCAGGAAGAGCTGAGTCATCACCGCACC  866

seq1  TATGATGGATGTGCTTCATCTCCTCTGACATGGATAAGCTCAAGCTTCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGATGTGCTTCATCTCCTCTGACATGGATAAGCTCAAGCTTCCG  916

seq1  AGACTGAGGTGATCAGCCTGGATTCCAGGTGGCAACCATTATGAGAACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGTGATCAGCCTGGATTCCAGGTGGCAACCATTATGAGAACCT  966

seq1  ACAAAACACCAGAGCAGGAGCTAGCTCCTGAGAGGGCCGTGGGTTTCTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACCAGAGCAGGAGCTAGCTCCTGAGAGGGCCGTGGGTTTCTGA  1016

seq1  GAGATCTTTTTGAATACTTAGAGTTCTCCCCTGGAACTCATGGCCTTTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTTTTGAATACTTAGAGTTCTCCCCTGGAACTCATGGCCTTTGT  1066

seq1  AAGGTCTGCTTTGCATTTGTCATTATCTTTCCTCTCTTCTTTTTCCCCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTGCTTTGCATTTGTCATTATCTTTCCTCTCTTCTTTTTCCCCAT  1116

seq1  CAGATAACCGGTGAAGCTGCTCTTGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  CAGATAACCGGTGAAGCTGCTCTTGAATTC  1146