BAC Information

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BAC

Clone NameB6Ng01-090D23
Chromosome12 (Build37)
Map Location 75,941,076 - 76,091,898
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneLOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D23.bB6Ng01-090D23.g
ACCDH902602DH902603
length1,0831,167
definitionDH902602|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D23, 5' end.DH902603|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,090,800 - 76,091,898)(75,941,076 - 75,942,252)
sequence
gaattccctcaagaaattaagttcttttcaaaaaccataatttaatgaac
caatcgctgagcatcatgaaaacagtcaaagccaacaagcatatggtatt
ccaaggaagcaaccaacgacagtattgataatggtatcacaagcaaacct
gttattcattcaaaccatagaacaaaacacacagaaaaagttttgggttt
gacatcaacatttggtagaattttaaaactcacattcttgatgttacatt
tatttgtagctgatttgaagaagtgattgtaataacctctcactaaaaac
ctttgtttggctttatggggtttattacaaatatttaaatgtagcagaga
taaaaaaatgagcaaataaacaaaaacctctggtagtctaaatatggcct
cctgccaatgtataataactcagaattacagactagccagggggagaagg
gtcaagccctgagctactctgcatttagacaacaagcagataagaaagag
cccaagaggatgataagagacatctaggaataaggtaaaattcgcaatta
tttgactgagtggaagccaaggcagaaagtgagcaactcttctgaagttt
tgtaatagataaataaaatataatgaaaagtatcctactaggactttgcc
tccaggttacaagtgagcttgatgaaggagattgattagggtgctagaga
cggatgccaccctggagtgaggtaaggagcactgatacataactaagatg
gtgtagtttcatcagaaagatgatcacatcaacttgtgagagtggtccaa
ggtgatccgaaaaataacttcaagcacatgtgatggatagatagatctgc
aggagagaaaagagcagtcaaaatgcttatgggatggatggttacacatg
tgggaagaaatacagttagtatttctttgaccatgataagtggtacatta
tcctatacgaacataagtagaatttgagccacattgacatgatttctttg
tactgggattctcagatctgattgcttgtgtctgtcagatgaataaaagt
ctcctcctgcatttgcctatcaagccttgtagt
gaattcaattcattgtagagaaaacaaccagttaaaaattgggaagtgat
ttaaatacattttttcccaagagaagatacacaaaggctgaaaaagatta
agggagaatgatagaagtaatatggtatgaaaggagaaagggaaaaatta
ggggtagggagcattagctgggggaggggactttaaatgggggcggaaat
gggaatgcagaaaagtggtatggggagaagtaactaactctaagaacttt
gaaacgggcctatggaaacttactatttcataaattctcttaaaactata
tttatttatttatctatttattcatttatttttatttattttttaactat
agaatggtcttttgtccaataatttacttattcactttatatccagatca
cagattcccctctcctcccattcccagcctcccttaccctcctttccccg
ttttctctgagaaggaggaggactcccctgtatatgaacccaccctagta
cctcaaatcactgtgggactaggtacatccccttccactgaggccagaca
aggcagcccagttaggggaacaggatccatgagcaagcaacagagtcagg
gtaagctctgctcaagtcactgggggacccatatgaagatcaaactgcac
atctgctgcatatgtgcagggggcctaagaccagtcttggtatgctcttt
ggttggtggtttagtctcttggaaggcccaagggagcaggatagttgact
ctgttggtcttcttgtgaaaccctctcccctgtcctcctctgggttcctc
catctttcccccaactcttcatgaaaccttctttgagctctgcctaatgt
ttggctatgggtatctgcctttgtttctgtcaactgcttaaataaagaaa
tgaattgagaataatgttattccctaaatctgtgaggtcaccatataaga
gtctagtactaggacatgggatattttacccttagttgttgttcatgcgg
gtcttcaaggagccaactctaatatgcagtctatcgctattgttctgttt
gcctgtcgaacctcatggtaaagatctctatgggagaagcactgacatgg
gaccaatgccacattctggactagttgatgagccaatagaatttggtttc
agccatggcttttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76090800_76091898
seq2: B6Ng01-090D23.b_47_1129 (reverse)

seq1  ACTACAAAGCTTGATA-GCAAATGCAGGGAAGAAGACTTTTAAATTCATC  49
      ||||||| |||||||| |||||||||||  || ||||||||  |||||||
seq2  ACTACAAGGCTTGATAGGCAAATGCAGG--AGGAGACTTTT--ATTCATC  46

seq1  TGACAGACACAAAACCATCAGGATCTGAGAAATCCCAGTACAAAGAAATC  99
      |||||||||| || | |||| |||||||| ||||||||||||||||||||
seq2  TGACAGACAC-AAGCAATCA-GATCTGAG-AATCCCAGTACAAAGAAATC  93

seq1  ATGTCAATGTGGGCCTCAAATTCTACTTTATGTTTCCGTATAGGATAAAT  149
      ||||||||||||  |||||||||||| |||||||  |||||||||| |||
seq2  ATGTCAATGTGG--CTCAAATTCTAC-TTATGTT--CGTATAGGAT-AAT  137

seq1  GTACCAACTTATCATGGTCAAAAGAAATACCTAACTGTATTTCTTCCCAC  199
      ||||| ||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GTACC-ACTTATCATGGTC-AAAGAAATA-CTAACTGTATTTCTTCCCAC  184

seq1  ATGTGTAACCATCCATCCCATAAGCATTTTTGACTGCTCTTTTCTCTCCT  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGTGTAACCATCCATCCCATAAGCA-TTTTGACTGCTCTTTTCTCTCCT  233

seq1  GCAGATCTATCTATCCATCACATGTGCTTGAAGTTATTTTTCGGATCACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTATCTATCCATCACATGTGCTTGAAGTTATTTTTCGGATCACC  283

seq1  TTGGACCACTCTCACAAGTTGATGTGATCATCTTTCTGATGAAACTACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACTCTCACAAGTTGATGTGATCATCTTTCTGATGAAACTACAC  333

seq1  CATCTTAGTTATGTATCAGTGCTCCTTACCTCACTCCAGGGTGGCATCCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGTTATGTATCAGTGCTCCTTACCTCACTCCAGGGTGGCATCCG  383

seq1  TCTCTAGCACCCTAATCAATCTCCTTCATCAAGCTCACTTGTAACCTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCACCCTAATCAATCTCCTTCATCAAGCTCACTTGTAACCTGGA  433

seq1  GGCAAAGTCCTAGTAGGATACTTTTCATTATATTTTATTTATCTATTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTCCTAGTAGGATACTTTTCATTATATTTTATTTATCTATTACA  483

seq1  AAACTTCAGAAGAGTTGCTCACTTTCTGCCTTGGCTTCCACTCAGTCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGAAGAGTTGCTCACTTTCTGCCTTGGCTTCCACTCAGTCAAA  533

seq1  TAATTGCGAATTTTACCTTATTCCTAGATGTCTCTTATCATCCTCTTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCGAATTTTACCTTATTCCTAGATGTCTCTTATCATCCTCTTGGG  583

seq1  CTCTTTCTTATCTGCTTGTTGTCTAAATGCAGAGTAGCTCAGGGCTTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTATCTGCTTGTTGTCTAAATGCAGAGTAGCTCAGGGCTTGAC  633

seq1  CCTTCTCCCCCTGGCTAGTCTGTAATTCTGAGTTATTATACATTGGCAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCCCTGGCTAGTCTGTAATTCTGAGTTATTATACATTGGCAGG  683

seq1  AGGCCATATTTAGACTACCAGAGGTTTTTGTTTATTTGCTCATTTTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATATTTAGACTACCAGAGGTTTTTGTTTATTTGCTCATTTTTTTA  733

seq1  TCTCTGCTACATTTAAATATTTGTAATAAACCCCATAAAGCCAAACAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTACATTTAAATATTTGTAATAAACCCCATAAAGCCAAACAAAG  783

seq1  GTTTTTAGTGAGAGGTTATTACAATCACTTCTTCAAATCAGCTACAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGAGAGGTTATTACAATCACTTCTTCAAATCAGCTACAAATA  833

seq1  AATGTAACATCAAGAATGTGAGTTTTAAAATTCTACCAAATGTTGATGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACATCAAGAATGTGAGTTTTAAAATTCTACCAAATGTTGATGTC  883

seq1  AAACCCAAAACTTTTTCTGTGTGTTTTGTTCTATGGTTTGAATGAATAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAACTTTTTCTGTGTGTTTTGTTCTATGGTTTGAATGAATAAC  933

seq1  AGGTTTGCTTGTGATACCATTATCAATACTGTCGTTGGTTGCTTCCTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCTTGTGATACCATTATCAATACTGTCGTTGGTTGCTTCCTTGG  983

seq1  AATACCATATGCTTGTTGGCTTTGACTGTTTTCATGATGCTCAGCGATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATATGCTTGTTGGCTTTGACTGTTTTCATGATGCTCAGCGATTG  1033

seq1  GTTCATTAAATTATGGTTTTTGAAAAGAACTTAATTTCTTGAGGGAATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAAATTATGGTTTTTGAAAAGAACTTAATTTCTTGAGGGAATTC  1083

seq1: chr12_75941076_75942252
seq2: B6Ng01-090D23.g_67_1233

seq1  GAATTCAATTCATTGTAGAGAAAACAACCAGTTAAAAATTGGGAAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCATTGTAGAGAAAACAACCAGTTAAAAATTGGGAAGTGAT  50

seq1  TTAAATACATTTTTTCCCAAGAGAAGATACACAAAGGCTGAAAAAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACATTTTTTCCCAAGAGAAGATACACAAAGGCTGAAAAAGATTA  100

seq1  AGGGAGAATGATAGAAGTAATATGGTATGAAAGGAGAAAGGGAAAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAATGATAGAAGTAATATGGTATGAAAGGAGAAAGGGAAAAATTA  150

seq1  GGGGTAGGGAGCATTAGCTGGGGGAGGGGACTTTAAATGGGGGCGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGGGAGCATTAGCTGGGGGAGGGGACTTTAAATGGGGGCGGAAAT  200

seq1  GGGAATGCAGAAAAGTGGTATGGGGAGAAGTAACTAACTCTAAGAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCAGAAAAGTGGTATGGGGAGAAGTAACTAACTCTAAGAACTTT  250

seq1  GAAACGGGCCTATGGAAACTTACTATTTCATAAATTCTCTTAAAACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGGGCCTATGGAAACTTACTATTTCATAAATTCTCTTAAAACTATA  300

seq1  TTTATTTATTTATCTATTTATTCATTTATTTTTATTTATTTTTTAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATCTATTTATTCATTTATTTTTATTTATTTTTTAACTAT  350

seq1  AGAATGGTCTTTTGTCCAATAATTTACTTATTCACTTTATATCCAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTCTTTTGTCCAATAATTTACTTATTCACTTTATATCCAGATCA  400

seq1  CAGATTCCCCTCTCCTCCCATTCCCAGCCTCCCTTACCCTCCTTTCCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCCTCTCCTCCCATTCCCAGCCTCCCTTACCCTCCTTTCCCCG  450

seq1  TTTTCTCTGAGAAGGAGGAGGACTCCCCTGTATATGAACCCACCCTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGAGAAGGAGGAGGACTCCCCTGTATATGAACCCACCCTAGTA  500

seq1  CCTCAAATCACTGTGGGACTAGGTACATCCCCTTCCACTGAGGCCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATCACTGTGGGACTAGGTACATCCCCTTCCACTGAGGCCAGACA  550

seq1  AGGCAGCCCAGTTAGGGGAACAGGATCCATGAGCAAGCAACAGAGTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCAGTTAGGGGAACAGGATCCATGAGCAAGCAACAGAGTCAGG  600

seq1  GTAAGCTCTGCTCAAGTCACTGGGGGACCCATATGAAGATCAAACTGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCTGCTCAAGTCACTGGGGGACCCATATGAAGATCAAACTGCAC  650

seq1  ATCTGCTGCATATGTGCAGGGGGCCTAAGACCAGTCTTGGTATGCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGCATATGTGCAGGGGGCCTAAGACCAGTCTTGGTATGCTCTTT  700

seq1  GGTTGGTGGTTTAGTCTCTTGGAAGGCCCAAGGGAGCAGGATAGTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGGTTTAGTCTCTTGGAAGGCCCAAGGGAGCAGGATAGTTGACT  750

seq1  CTGTTGGTCTTCTTGTGAAACCCTCTCCCCTGTCCTCCTCTGGGTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTCTTCTTGTGAAACCCTCTCCCCTGTCCTCCTCTGGGTTCCTC  800

seq1  CATCTTTCCCCCAACTCTTCCATGAAA-CTTC-TTGAGCTCTGCCTAATG  848
      ||||||||||||||||||| ||||||| |||| |||||||||||||||||
seq2  CATCTTTCCCCCAACTCTT-CATGAAACCTTCTTTGAGCTCTGCCTAATG  849

seq1  TTTGGCTATGGGTATCTGCCTCTGTTTCTGTCACCTGCTTAAAATAAAGA  898
      ||||||||||||||||||||| ||||||||||| |||||| |||||||||
seq2  TTTGGCTATGGGTATCTGCCTTTGTTTCTGTCAACTGCTT-AAATAAAGA  898

seq1  CATGAATTGAGAATAATGTTATCCCTAAAATCTGT-AGGTCACCATATAA  947
       ||||||||||||||||||||| ||  |||||||| ||||||||||||||
seq2  AATGAATTGAGAATAATGTTATTCCCTAAATCTGTGAGGTCACCATATAA  948

seq1  GAAGTCTAGTACTA-GACATGGGATATTTACCCTTTAGTTGTTTGTCAAT  996
      | |||||||||||| ||||||||||||||  || ||||||| ||||  ||
seq2  G-AGTCTAGTACTAGGACATGGGATATTTTACCCTTAGTTG-TTGTTCAT  996

seq1  GCGGGTC-TCAAGAGGCCCAACTCCTAAATAATGCAGTCTATCGCTATTG  1045
      ||||||| ||||| |  |||||| ||||   |||||||||||||||||||
seq2  GCGGGTCTTCAAG-GAGCCAACT-CTAA--TATGCAGTCTATCGCTATTG  1042

seq1  TTCTTGTTTGCCTGTCAGAACTTCATGGTAAAGA-CTCTATTGGTAGAAT  1094
      ||| |||||||||||| |||| |||||||||||| ||||| ||| |||| 
seq2  TTC-TGTTTGCCTGTC-GAACCTCATGGTAAAGATCTCTA-TGGGAGAAG  1089

seq1  GACTGATAGTGGGACACAGGGCACATTCTTGGACATAGTTTGTAGAGACT  1144
       ||||| | ||||||  | | ||||||| ||||| ||| |||  ||| | 
seq2  CACTGACA-TGGGACCAATGCCACATTC-TGGAC-TAG-TTGATGAGCCA  1135

seq1  ATAGAATTTGGTTTCAGCCCTTGCTTTTTAAGG  1177
      ||||||||||||||||||| | || ||||||||
seq2  ATAGAATTTGGTTTCAGCCATGGC-TTTTAAGG  1167