BAC Information

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BAC

Clone NameB6Ng01-090E08
Chromosome5 (Build37)12 (Build37)
Map Location 151,807,521 - 151,807,72489,360,798 - 89,361,740
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl
Downstream geneLOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090E08.bB6Ng01-090E08.g
ACCDH902620DH902621
length948950
definitionDH902620|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E08, 5' end.DH902621|Mus musculus domesticus DNA, BAC clone: B6Ng01-090E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,807,521 - 151,807,724)(89,360,798 - 89,361,740)
sequence
gaattctatttcactgatctacctgtctgtctctgtaccaataccaagcg
tttttgttctttttgtttttgattttttttttgttttttgttttgttttg
tttcattttttgttttttaaccactattgctctgtagtatagcttgaggt
cagggatggtgatttcccccaaaagttcttttattgttgagaatggttta
tgctatcctgttttttgtttgtttgtttgtttgtttttttgttgttgttg
gttttttttgtcattccacatgaatttgagaattctttctatctctgtaa
aggattgaggtggaatgttgacagggattgcatggaatctggagattact
tttggtaatctgatcatttttactatgttaatcttgccaatcaatgagag
atctttccatcttatgaggtcttcttctatttctttcttcagaaactcga
tgttcttgacatacagatcttttacttgcatgattggagtcacacaaagg
tattttatgttatttgtgactgttgtgaaaggtgttttttccctaatttc
tttctcagcctgtttatcctttgagtataggaaggctactgatttgtttg
acttaattttatatccagccactttgctgaagtttatcagctatagtagt
tccctggtggaattttttggttcacttatgtattctatcatatcatctgc
aaatagtgataccttgacttcctcctttgcaatttgtttccctttaacct
ccttttgttgtctaaatgctaaagttatttaattctcaaatattgacgct
cccctttatgtccccccttgcagacttcttcctgccatgcccccatccct
ttcatctatgagagggtatacccctaggtatcacccctgcctgggacaaa
aagtctctacagattaggcacatcctccgccactgaggctgacagtta
gaattcattattttaacattgtcctcagtagcctcttttgtctctcatta
ccatagaaaaccagaatgcagtaaaagggtccatttgtttggttggttgg
tgtggtgattgaattatgcttggagcagggtgtggtatatctggaagtgt
ggccttgttggattacagttgcatctctgtggaggctgggctttggggaa
atatatatatatatactcaagctctggccagggtgagacatagtagtctc
atcttgatgccttcaacttttgagggtgagacaagcagttatgtgatcta
ggaaaacctagtctgtagaaagagttccagggcagccttgagtacacaga
aaagccctacctcagaaagaaagaatcatctttcttacttgtgtcttagt
cctccttcaaagaagatggcactcaacaggtaggttgttgattcaggttc
tggttatggaatggtctgggagtacatatagtttccatttttctaccagg
attgttcaagctcagaagcagagttaatctggccacaataatgtctagga
actcttctgggcttccttggcaacaaggatgctcagaagcttgagttctt
taatgaggtaccttttcctgcctacttacctccctcctcacttctatgcc
agaaagcaagtccctctttccttttgattgtgtgtggggatttcacaagc
tgccttttacatctcttgggagggtgtaacttggaattgtaagtccgtta
ggctcctcctcttggaaattcggttttctcagaatattttaacagccaca
gaaatgaaaccaacagataagattactagtgtattacttgccttgaaaca
gaaaattaagattgagtggtgctgactatgttgttagaaggtagcagtat
tcaagtcttctaaagcactatatatagataagtaggactatgaggggaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_151807521_151807724
seq2: B6Ng01-090E08.b_106_282 (reverse)

seq1  AAACAAACAAACAAACAAACAAAAAACAGGCAGTGGCGGCACACGACTTT  50
      ||||||||||||||||||||||||||||||   | ||   | || | | |
seq2  AAACAAACAAACAAACAAACAAAAAACAGG--ATAGC-ATAAACCATTCT  47

seq1  ----AATCCCAGCACTCAGGAGGTAGAGGCAGGTGGATTTCTGAGTATGA  96
          |||   || |||   | || | |  ||     ||  |      |||
seq2  CAACAATAAAAGAACTTTTGGGGGA-AATCA---CCATCCC------TGA  87

seq1  GGCCAGTCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGCACTACACAGA  146
         ||  ||   ||||||||  |  |   ||  |   |  |  | | |  
seq2  CCTCAAGCTATACTACAGAGCAA--TAGTGGTTA---AAAAACAAAAAAT  132

seq1  GAAACCCTGTCTCTATGGAAAAAAAAAAAAAAAAAGAAAAAAAAATCAAA  196
      |||||             |||| |||| ||||||  ||||||||||||||
seq2  GAAAC-------------AAAACAAAACAAAAAACAAAAAAAAAATCAAA  169

seq1  AACAAAAA  204
      ||||||||
seq2  AACAAAAA  177

seq1: chr12_89360798_89361740
seq2: B6Ng01-090E08.g_70_1019

seq1  GAATTCATTATTTTAACATTGTCCTCAGTAGCCTCTTTTGTCTCTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTAACATTGTCCTCAGTAGCCTCTTTTGTCTCTCATTA  50

seq1  CCATAGAAAA-CAGAATGCAGTAAAAGGGTCCACTTGTTTGTTTGTTTGG  99
      |||||||||| |||||||||||||||||||||| ||||||| ||| ||||
seq2  CCATAGAAAACCAGAATGCAGTAAAAGGGTCCATTTGTTTGGTTGGTTGG  100

seq1  TGTGGTGATTGAATTATGCTTGGAGCAGGGTGTGGTATATCTGGAAGTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGATTGAATTATGCTTGGAGCAGGGTGTGGTATATCTGGAAGTGT  150

seq1  GGCCTTGTTGGATTACAGTTGCATCTCTGTGGAGGCTGGGCTTTGGGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTGGATTACAGTTGCATCTCTGTGGAGGCTGGGCTTTGGGGAA  200

seq1  ----ATATATATATACTCAAGCTCTGCCCAGGGTGAGACATAGTAGTCTC  245
          |||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATATATATATATACTCAAGCTCTGGCCAGGGTGAGACATAGTAGTCTC  250

seq1  ATCTTCATGCCTTCAACTTTTGAGGGTGAGACAAGCAGTTATGTGATCTA  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATGCCTTCAACTTTTGAGGGTGAGACAAGCAGTTATGTGATCTA  300

seq1  GGAAAACCTAGTCTGTAGAATGAGTTCCAGGGCAGCCTTGAGTACACAGA  345
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAAACCTAGTCTGTAGAAAGAGTTCCAGGGCAGCCTTGAGTACACAGA  350

seq1  AATGCCCTACCTCAGAAAGAAAGAATCATCTTTCTTACTTGTGTCTTAGT  395
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTACCTCAGAAAGAAAGAATCATCTTTCTTACTTGTGTCTTAGT  400

seq1  CCTCCTTCAAAGAAGATGGCACTCACCAGGTAGCTTGTTGATTCAGGTTC  445
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CCTCCTTCAAAGAAGATGGCACTCAACAGGTAGGTTGTTGATTCAGGTTC  450

seq1  TGGTTATGGAATGATCTGGGAGTACATATAGTTTTCATTTTTCTACCAGG  495
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGGTTATGGAATGGTCTGGGAGTACATATAGTTTCCATTTTTCTACCAGG  500

seq1  ATTGTTCAAGCTCTGAAGCAGAGTTAATCTGGCCACAATAATGTCTAGGA  545
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAAGCTCAGAAGCAGAGTTAATCTGGCCACAATAATGTCTAGGA  550

seq1  CCTCTTCTGGGCTTCCTTGGCAACAAGGATGCTCAGAAGC-TGGGTTCTT  594
       ||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  ACTCTTCTGGGCTTCCTTGGCAACAAGGATGCTCAGAAGCTTGAGTTCTT  600

seq1  TAATGAGGTGCCTTTTCCTGCCTACTTACCTCCTTCCTCACTTCTATGCC  644
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  TAATGAGGTACCTTTTCCTGCCTACTTACCTCCCTCCTCACTTCTATGCC  650

seq1  AGAAAGCAAGTCCCTCTTTAC-TTTGATTATGTGT-GGGATTTCACAAGC  692
      ||||||||||||||||||| | ||||||| ||||| ||||||||||||||
seq2  AGAAAGCAAGTCCCTCTTTCCTTTTGATTGTGTGTGGGGATTTCACAAGC  700

seq1  TGCC-TTTACATCTCTTGGGGGGGTGTAACTTGGAATTGTAAGTCCGTTA  741
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCCTTTTACATCTCTTGGGAGGGTGTAACTTGGAATTGTAAGTCCGTTA  750

seq1  GGCTCCTCCTCTTGGAAATTCAGTTTTCTCAGAATATTTTAACAGCCTCA  791
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GGCTCCTCCTCTTGGAAATTCGGTTTTCTCAGAATATTTTAACAGCCACA  800

seq1  GAAATGAAACCAACAGATAATGATTACTAGTGTAGTACTTGCCTTGATAC  841
      |||||||||||||||||||| ||||||||||||| |||||||||||| ||
seq2  GAAATGAAACCAACAGATAA-GATTACTAGTGTATTACTTGCCTTGAAAC  849

seq1  AGAAAAATAAGACTGAGTGGTGCTGACTATG-TGTTAG-AGGTAGCAAGT  889
      |||||| ||||| |||||||||||||||||| |||||| ||||||| |||
seq2  AGAAAATTAAGATTGAGTGGTGCTGACTATGTTGTTAGAAGGTAGC-AGT  898

seq1  ATCCAAGTCTACTTAAAGCACTATGATATAGATAAGTAGGACTATGAGGG  939
      || ||||||| | ||||||||||| |||||||||||||||||||||||||
seq2  ATTCAAGTCTTC-TAAAGCACTAT-ATATAGATAAGTAGGACTATGAGGG  946

seq1  GAAT  943
      ||||
seq2  GAAT  950