BAC Information

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BAC

Clone NameB6Ng01-090F01
Chromosome12 (Build37)4 (Build37)
Map Location 49,613,826 - 49,614,9758,329,195 - 8,329,753
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090F01.bB6Ng01-090F01.g
ACCDH902652DH902653
length1,143854
definitionDH902652|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F01, 5' end.DH902653|Mus musculus domesticus DNA, BAC clone: B6Ng01-090F01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,613,826 - 49,614,975)(8,329,195 - 8,329,753)
sequence
gaattcattcataactaaattgtttgcttctggtcagatcaacaccaatt
ttgattttgctgtttgtgtgcttgtgtgcctatatgtatgcttgtgtacc
tgtgaatgtttgtgcacatatatctggagactagaagttgatcccagtcc
tcaattactttttgtcttattttacaaaaatctgataaagacttctgtaa
agtatccattagcctttcgatatgtttttaattctatgttattcaaaact
cagagagggaaaaagacctttcattaaggacaaacataggtaaagataca
gggatgggaatggacagatttacaacatagcactcagacaacaaaggttt
agacttgtaccacagacaaacaggggacagaagaagacatgctgagaaag
cagagaattgaagtctggaattcttgttatttaaattacttcaaggggac
ctacttttaatttcattttttcaaaatacaacaccaaaacattattggtt
actctatgtttatgactaatgctttgaaacagataagcccaagacccact
gtttccatagtttgtatcttagtgatggttatttagacctaggttcacca
gtgtgccatttgtagtaatggtttatcactaataatagaaatgagcctcc
cctttctgactttttcatatctttaatgttaaacaaattgtttggttatg
aataaaagccaaagcagagattacactttaattcatctcatgtgtatcag
atggtatgtccactcatattttgctgtgttagtatttcacgtaatttgaa
ttctctgtaactaaaatcatgtatatcagatccatattttaattaacatg
atttttactgttggtttcagtttttggtttatttgtttctaacagcattt
tcactaattaaaatgagcttatatctctttttcttttattttcactttca
tgcagactcaactgactttaaactccatcagtgaggatgagagatagaat
tcagataatcccacactagatcatctttggtctggcttcctactactgaa
acatgtgccattactccctttaatcctgtatttttctttaaccaaacaaa
taccattaatacttttctgatccctaaagatcctaagacaatc
gaattcagtccgttgatattaagagatattaaggaaaagtaattgttgct
tccttttattttgttgttagagttggcattctgtttttgtggctgtcttc
tttttggtttgttgagggattactttcttgctttttctagggcgtgattt
cagtccttgtattgttttttttttgttgttgtttgtttttgtttttgtat
tttttttttctgttattatcctttgaagggctggattcctggaaagataa
tgtgtgaatttggttttgttgtgaaatactttggtttctccatctatggt
aattgagaatttggccaggtatagtagcctgggctggcatttgtgttctc
ttagtgtctgtataacatctgtccaggctcttctggctttcatagtctct
ggtgaaaagtctggtgtaattctgatagtccagcctttatatgttatttg
acctttctcccttactgcttttaatattctctctttatttagtgcatttg
ttgttctgattattatgtgtcgggaggaatttcttttctggtctagtcta
tttggagttctgtaggcttcttgtatgttcatgggcatgtcactctaggt
ttgggaagttttcttctataattttgttgaagatgtttgcaggcctttta
agttgaaaatcttcattctcatcaactcctattatcccgtaggttttggt
cttctcattgtgtcttggatttcctggatgtttttgagttaggatctttt
tgcattttccatttttcttttgattgtgtgccgatgttctctatggaatc
ttctgcacctgagattctctcttccatctcttgtaatctgttgctgatgc
tcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49613826_49614975
seq2: B6Ng01-090F01.b_44_1186

seq1  GAATTCATTCATAACTAAATTGTTTGCTTCTGGTCAGATCAACACCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATAACTAAATTGTTTGCTTCTGGTCAGATCAACACCAATT  50

seq1  TTGATTTTGCTGTTTGTGTGCTTGTGTGCCTATATGTATGCTTGTGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTGCTGTTTGTGTGCTTGTGTGCCTATATGTATGCTTGTGTACC  100

seq1  TGTGAATGTTTGTGCACATATATCTGGAGACTAGAAGTTGATCCCAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTTTGTGCACATATATCTGGAGACTAGAAGTTGATCCCAGTCC  150

seq1  TCAATTACTTTTTGTCTTATTTTACAAAAATCTGATAAAGACTTCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACTTTTTGTCTTATTTTACAAAAATCTGATAAAGACTTCTGTAA  200

seq1  AGTATCCATTAGCCTTTCGATATGTTTTTAATTCTATGTTATTCAAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCATTAGCCTTTCGATATGTTTTTAATTCTATGTTATTCAAAACT  250

seq1  CAGAGAGGGAAAAAGACCTTTCATTAAGGACAAACATAGGTAAAGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAAAAAGACCTTTCATTAAGGACAAACATAGGTAAAGATACA  300

seq1  GGGATGGGAATGGACAGATTTACAACATAGCACTCAGACAACAAAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGAATGGACAGATTTACAACATAGCACTCAGACAACAAAGGTTT  350

seq1  AGACTTGTACCACAGACAAACAGGGGACAGAAGAAGACATGCTGAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTACCACAGACAAACAGGGGACAGAAGAAGACATGCTGAGAAAG  400

seq1  CAGAGAATTGAAGTCTGGAATTCTTGTTATTTAAATTACTTCAAGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTGAAGTCTGGAATTCTTGTTATTTAAATTACTTCAAGGGGAC  450

seq1  CTACTTTTAATTTCATTTTTTCAAAATACAACACCAAAACATTATTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTAATTTCATTTTTTCAAAATACAACACCAAAACATTATTGGTT  500

seq1  ACTCTATGTTTATGACTAATGCTTTGAAACAGATAAGCCCAAGACCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGTTTATGACTAATGCTTTGAAACAGATAAGCCCAAGACCCACT  550

seq1  GTTTCCATAGTTTGTATCTTAGTGATGGTTATTTAGACCTAGGTTCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATAGTTTGTATCTTAGTGATGGTTATTTAGACCTAGGTTCACCA  600

seq1  GTGTGCCATTTGTAGTAATGGTTTATCACTAATAATAGAAATGAGCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCATTTGTAGTAATGGTTTATCACTAATAATAGAAATGAGCCTCC  650

seq1  CCTTTCTGACTTTTTCATATCTTTAATGTTAAACAAATTGTTTGGTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGACTTTTTCATATCTTTAATGTTAAACAAATTGTTTGGTTATG  700

seq1  AATAAAAGCCAAAGCAGAGATTACACTTTAATTCATCTCATGTGTATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCAAAGCAGAGATTACACTTTAATTCATCTCATGTGTATCAG  750

seq1  ATGGTATGTCCACTCATATTTTGCTGTGTTAGTATTTCAGGTAATTTGAA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGTATGTCCACTCATATTTTGCTGTGTTAGTATTTCACGTAATTTGAA  800

seq1  TTCTCTGTAACTAAAATCATGTATATCAGATCCATATTTTAATTAACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTAACTAAAATCATGTATATCAGATCCATATTTTAATTAACATG  850

seq1  ATTTTTACTGTTGGTTTCAGTTTTTGGTTTATTTGTTTCTAACAGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTGTTGGTTTCAGTTTTTGGTTTATTTGTTTCTAACAGCATTT  900

seq1  TCACTAATTAAAATGAGCTTATATCTCTTTTTCTTTTATTTTCACTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATTAAAATGAGCTTATATCTCTTTTTCTTTTATTTTCACTTTCA  950

seq1  TGCAGGACTCAACTGACTTTAAACTCCATCAGGTGAGGATGAGAGATAGA  1000
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCA-GACTCAACTGACTTTAAACTCCATCA-GTGAGGATGAGAGATAGA  998

seq1  ATCCAGATAATCCCACACTAGATCATCTTTGGTCTGGCTTCCTACTACTG  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATAATCCCACACTAGATCATCTTTGGTCTGGCTTCCTACTACTG  1048

seq1  AAACAATGTGCCATTACTCCCTTTAATCCTGTAATTTTTCTT--ACCAAA  1098
      |||| ||||||||||||||||||||||||||| |||||||||  ||||||
seq2  AAAC-ATGTGCCATTACTCCCTTTAATCCTGT-ATTTTTCTTTAACCAAA  1096

seq1  CCAAATACCCATATAATACTTTTCTGATTCCTAAGAGATCTTAGAGACAA  1148
       |||||| |||| ||||||||||||||| ||||| ||||| || ||||||
seq2  -CAAATA-CCAT-TAATACTTTTCTGATCCCTAA-AGATCCTA-AGACAA  1141

seq1  TC  1150
      ||
seq2  TC  1143

seq1: chr4_8329195_8329753
seq2: B6Ng01-090F01.g_361_922 (reverse)

seq1  GCGAGCATCAGCAACAAAATGCAAGAGTTGGAAGAGAGAATCTCAGGTGC  50
      |||||||||||||||| | | |||||| ||||||||||||||||||||||
seq2  GCGAGCATCAGCAACAGATTACAAGAGATGGAAGAGAGAATCTCAGGTGC  50

seq1  AGAAGATTCCATAGAGAACATCGGCACAACAATCAAA--GAAACGGCAAA  98
      ||||||||||||||||||||||||||| |||||||||   |||  | |||
seq2  AGAAGATTCCATAGAGAACATCGGCAC-ACAATCAAAAGAAAAATGGAAA  99

seq1  ATG-AAAAAGATCCTAACTC-AAAACATCCAGGAAATCCAGGGCACAATG  146
      ||| |||||||||||||||| ||||||||||||||||||| | |||||||
seq2  ATGCAAAAAGATCCTAACTCAAAAACATCCAGGAAATCCAAGACACAATG  149

seq1  AGAAGATC-AAACCTAC-GGATAATAGGAGTTGATGAGAATGAAGGTTTT  194
      |||||| | |||||||| ||||||||||||||||||||||||||| ||||
seq2  AGAAGACCAAAACCTACGGGATAATAGGAGTTGATGAGAATGAAGATTTT  199

seq1  CAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAACTT  244
      ||||||||| |||| ||||| |||||||||||||||||||||||||||||
seq2  CAACTTAAAAGGCCTGCAAACATCTTCAACAAAATTATAGAAGAAAACTT  249

seq1  CCCAAACCTAAAAAATGACATGCCCATGAACATACAAGAAGCCTACAGAA  294
      |||||||||  | | |||||||||||||||||||||||||||||||||||
seq2  CCCAAACCT--AGAGTGACATGCCCATGAACATACAAGAAGCCTACAGAA  297

seq1  CTCCAAATAGACTGGACCAGAAAAGACATTCCTCCCGACACATAATAATC  344
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CTCCAAATAGACTAGACCAGAAAAGAAATTCCTCCCGACACATAATAATC  347

seq1  AGAACAACAAATGCACTAAATAAAGAGAGAATATTAAAAGCAGTAAGGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACAAATGCACTAAATAAAGAGAGAATATTAAAAGCAGTAAGGGA  397

seq1  GAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACT  444
      |||||||||| |||||||||||||| || |||||||||||||||||||||
seq2  GAAAGGTCAAATAACATATAAAGGCTGGACTATCAGAATTACACCAGACT  447

seq1  TTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAG  497

seq1  ACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCGGCCAAACT  544
      ||||||||||||||||||| |||||||||||||||||||| ||||||| |
seq2  ACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCTGGCCAAATT  547

seq1  CTCAATTACCATAGA  559
      |||||||||||||||
seq2  CTCAATTACCATAGA  562