BAC Information

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BAC

Clone NameB6Ng01-090H09
Chromosome12 (Build37)
Map Location 58,290,358 - 58,389,530
singlet/doubletdoublet
Overlap geneSlc25a21, AU021838
Upstream geneLOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H09.bB6Ng01-090H09.g
ACCDH902754DH902755
length1,0901,108
definitionDH902754|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H09, 5' end.DH902755|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,388,440 - 58,389,530)(58,290,358 - 58,291,491)
sequence
gaattcttccactgaggcacaagtaataacattaattattcatactaaac
tttaaaaataaagaaacacagaatcttattaaacatactaaaataaatta
tattttagaaaacctacactctacatcactgctttaaggcagtactcaac
ctacctgatgccgcgaccatttaacacagttccccatgttgtggtgatcc
acaatcacaaaattagtttgattgctttctatactatgttttgaatcata
acttaaatatctgatattcaggatatctaacatgtgacccctgtgaaagg
ttcatttgatccccaaagggatcgcgacctacaggttgaagatcactgtt
ctaaggggagagtccacagttcctcaggcagccaatccttgttggccacc
tgccacaatcctccatccctccatctgatattctagacgttcgtctatag
aagctactagcactctgttaagccaagtcataggaagctaaacagtaaat
ttcattacacttgcagccctgttctttatacaactttaaaaaatgcataa
aatcataaaatacaattttaaatttgtacttgtagaaatgaatatgtatt
taagccttatgccaatggggtactagtctaaaggtttttattgcaatcag
aatcagttattactgattctatattctataagctatattctatataaata
tatattcatatatgctatatgaatttttagtctatattgtatataattct
ttgaaaaaatcaagtttctaatgatatactgaacataaaataccaatata
aaattattaaattactaatcatacatgatattgtttatgatatttctgaa
cttttaataaattgattatttgcaggcaaggaatatatcacaatttactt
aaaggcttcaataaaatatgtcaacaatcttttatattgtttctaggatt
tctaaccactttcatcacttaagtgaaaatgatattatcacatacataac
atattttttttttttttttgggttttcgagacagggttctccggtagccc
tggctgaacataatgtactaacccaataatatctcacttt
gaattccccactcttgcaagttgtcctctaattgctacctgcatgccatg
gcacatgacttacatgggcctgcatgtacacaatagaaacacacatgcac
acatgcacaatagaaaatgaaatggaataaaaaggttttaggtatttggt
aatgatttgtagcatctttttttttttttttgattttggaatcctgaaat
attaaattacattgctatgagaagtggcaaagattttagacccagaaata
ttttttcacattatttactaagtagttgaaataaaatgttgttcttagta
ctgttgcagttcattcttaaaaattattagaacctgtggcgacttctctc
tttggaagtggagccaagaataaatgaacgttgtacgagtcagcctctgt
ggtcaagctggtggaagggagaacaaaggctgatttagcagcctgattct
gaaacattggggaaagttgttctatgtcaactgagtaatgcccacatatt
gacagtagcaaagcttctaaaatctcattcacaagaataaaataagaaat
ccttcaagtgtagttatttagctcctggttttgttctttaatgcatattc
ttgaagactagattttcctaaagagagacaaaactactcttaattaacat
acaccccttaaaggtattttataattaatttgagcaatagggttgcttcc
tcctctgtggttaaaataagggggaattttttccctccctaattatccag
ataatgggttccagcctcccttttgatgtgtcacaagggctcacctgttt
cactacaacctgctatttattatcaaacaattatagttcctcaaatcccg
aatttccaaaggtgtcatttatccaaatcacatgtgttgccccctttgca
ctcattctaaaaagaaatttccttgatcaaaatgtaagcttactaccccc
tggtgtatcagcccttttattactactacaaattaaatccgaagactcta
gtatatgtaccattatgccatccccttcgtatatttcactattaaataga
taaaaagaaaaatatgaaaattactttaggattaagatcatcttttaaaa
aaaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58388440_58389530
seq2: B6Ng01-090H09.b_47_1136 (reverse)

seq1  AAAGTGAGATTATTTAATGGG-TAGTAACATATATGTTCAGCCAGGGCTA  49
      ||||||||||   ||| |||| |||| |||| ||||||||||||||||||
seq2  AAAGTGAGAT--ATTATTGGGTTAGT-ACAT-TATGTTCAGCCAGGGCTA  46

seq1  CCGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAATATGTTATG  99
      |||   |||||||||||||||| |||||||||||||||||||||||||||
seq2  CCGGAGAACCCTGTCTCGAAAACCCAAAAAAAAAAAAAAAATATGTTATG  96

seq1  TATGTGATAAATATCATTTTCACTTAAGTGATGAAAGTGGTTAGAAAT-C  148
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  TATGTGAT-AATATCATTTTCACTTAAGTGATGAAAGTGGTTAGAAATCC  145

seq1  TAGAAACAATATAAAAGATTGTTGACATATTTTA-TGAAGCCTTTAAGTA  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGAAACAATATAAAAGATTGTTGACATATTTTATTGAAGCCTTTAAGTA  195

seq1  AATTGTGATATATTCCTTGCCTGCAAATAATCAATTTATTAAAAGTTCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGATATATTCCTTGCCTGCAAATAATCAATTTATTAAAAGTTCAG  245

seq1  AAATATCATAAACAATATCATGTATGATTAGTAATTTAATAATTTTATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCATAAACAATATCATGTATGATTAGTAATTTAATAATTTTATAT  295

seq1  TGGTATTTTATGTTCAGTATATCATTAGAAACTTGATTTTTTCAAAGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTATGTTCAGTATATCATTAGAAACTTGATTTTTTCAAAGAAT  345

seq1  TATATACAATATAGACTAAAAATTCATATAGCATATATGAATATATATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAATATAGACTAAAAATTCATATAGCATATATGAATATATATTT  395

seq1  ATATAGAATATAGCTTATAGAATATAGAATCAGTAATAACTGATTCTGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAATATAGCTTATAGAATATAGAATCAGTAATAACTGATTCTGAT  445

seq1  TGCAATAAAAACCTTTAGACTAGTACCCCATTGGCATAAGGCTTAAATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAAAAACCTTTAGACTAGTACCCCATTGGCATAAGGCTTAAATAC  495

seq1  ATATTCATTTCTACAAGTACAAATTTAAAATTGTATTTTATGATTTTATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTTCTACAAGTACAAATTTAAAATTGTATTTTATGATTTTATG  545

seq1  CATTTTTTAAAGTTGTATAAAGAACAGGGCTGCAAGTGTAATGAAATTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTAAAGTTGTATAAAGAACAGGGCTGCAAGTGTAATGAAATTTA  595

seq1  CTGTTTAGCTTCCTATGACTTGGCTTAACAGAGTGCTAGTAGCTTCTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGCTTCCTATGACTTGGCTTAACAGAGTGCTAGTAGCTTCTATA  645

seq1  GACGAACGTCTAGAATATCAGATGGAGGGATGGAGGATTGTGGCAGGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAACGTCTAGAATATCAGATGGAGGGATGGAGGATTGTGGCAGGTGG  695

seq1  CCAACAAGGATTGGCTGCCTGAGGAACTGTGGACTCTCCCCTTAGAACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGGATTGGCTGCCTGAGGAACTGTGGACTCTCCCCTTAGAACAG  745

seq1  TGATCTTCAACCTGTAGGTCGCGATCCCTTTGGGGATCAAATGAACCTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCAACCTGTAGGTCGCGATCCCTTTGGGGATCAAATGAACCTTT  795

seq1  CACAGGGGTCACATGTTAGATATCCTGAATATCAGATATTTAAGTTATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGTCACATGTTAGATATCCTGAATATCAGATATTTAAGTTATGA  845

seq1  TTCAAAACATAGTATAGAAAGCAATCAAACTAATTTTGTGATTGTGGATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACATAGTATAGAAAGCAATCAAACTAATTTTGTGATTGTGGATC  895

seq1  ACCACAACATGGGGAACTGTGTTAAATGGTCGCGGCATCAGGTAGGTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAACATGGGGAACTGTGTTAAATGGTCGCGGCATCAGGTAGGTTGA  945

seq1  GTACTGCCTTAAAGCAGTGATGTAGAGTGTAGGTTTTCTAAAATATAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCCTTAAAGCAGTGATGTAGAGTGTAGGTTTTCTAAAATATAATT  995

seq1  TATTTTAGTATGTTTAATAAGATTCTGTGTTTCTTTATTTTTAAAGTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTATGTTTAATAAGATTCTGTGTTTCTTTATTTTTAAAGTTTA  1045

seq1  GTATGAATAATT-CTGTTATTACTTGTGCCTCAGTGGAAGAATTC  1091
      ||||||||||||  |||||||||||||||||||||||||||||||
seq2  GTATGAATAATTAATGTTATTACTTGTGCCTCAGTGGAAGAATTC  1090

seq1: chr12_58290358_58291491
seq2: B6Ng01-090H09.g_69_1176

seq1  GAATTCCCCACTCTTGCAAGTTGTCCTCTAATTGCTACCTGCATGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACTCTTGCAAGTTGTCCTCTAATTGCTACCTGCATGCCATG  50

seq1  GCACATGACTTACATGGGCCTGCATGTACACAATAGAAACACACATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGACTTACATGGGCCTGCATGTACACAATAGAAACACACATGCAC  100

seq1  ACATGCACAATAGAAAATGAAATGGAATAAAAAGGTTTTAGGTATTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAATAGAAAATGAAATGGAATAAAAAGGTTTTAGGTATTTGGT  150

seq1  AATGATTTGTAGCATCTTTTTTTTTTTTTTTGATTTTGGAATCCTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTGTAGCATCTTTTTTTTTTTTTTTGATTTTGGAATCCTGAAAT  200

seq1  ATTAAATTACATTGCTATGAGAAGTGGCAAAGATTTTAGACCCAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTACATTGCTATGAGAAGTGGCAAAGATTTTAGACCCAGAAATA  250

seq1  TTTTTTCACATTATTTACTAAGTAGTTGAAATAAAATGTTGTTCTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACATTATTTACTAAGTAGTTGAAATAAAATGTTGTTCTTAGTA  300

seq1  CTGTTGCAGTTCATTCTTAAAAATTATTAGAACCTGTGGCGACTTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGTTCATTCTTAAAAATTATTAGAACCTGTGGCGACTTCTCTC  350

seq1  TTTGGAAGTGGAGCCAAGAATAAATGAACGTTGTACGAGTCAGCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTGGAGCCAAGAATAAATGAACGTTGTACGAGTCAGCCTCTGT  400

seq1  GGTCAAGCTGGTGGAAGGGAGAACAAAGGCTGATTTAGCAGCCTGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCTGGTGGAAGGGAGAACAAAGGCTGATTTAGCAGCCTGATTCT  450

seq1  GAAACATTGGGGAAAGTTGTTCTATGTCAACTGAGTAATGCCCACATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTGGGGAAAGTTGTTCTATGTCAACTGAGTAATGCCCACATATT  500

seq1  GACAGTAGCAAAGCTTCTAAAATCTCATTCACAAGAATAAAATAAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCAAAGCTTCTAAAATCTCATTCACAAGAATAAAATAAGAAAT  550

seq1  CCTTCAAGTGTAGTTATTTAGCTCCTGGTTTTGTTCTTTAATGCATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGTGTAGTTATTTAGCTCCTGGTTTTGTTCTTTAATGCATATTC  600

seq1  TTGAAGACTAGATTTTCCTAAAGAGAGACAAAACTACTCTTAATTAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTAGATTTTCCTAAAGAGAGACAAAACTACTCTTAATTAACAT  650

seq1  ACACCCCTTAAAGGTATTTTATAATTAATTTGAGCAATAGGGTTGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTTAAAGGTATTTTATAATTAATTTGAGCAATAGGGTTGCTTCC  700

seq1  TCCTCTGTGGTTAAAATAAGGGGGAATTTTTTCCCTCCCTAATTATCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGGTTAAAATAAGGGGGAATTTTTTCCCTCCCTAATTATCCAG  750

seq1  ATAATGGGTTCCAGCCTCCC-TTTGATGTGTCACAAGGGCTCACCTGTTT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAATGGGTTCCAGCCTCCCTTTTGATGTGTCACAAGGGCTCACCTGTTT  800

seq1  CACTACAACCTGCTATTTATTATCAAACAATTATAGTTCCTCAAATCCCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAACCTGCTATTTATTATCAAACAATTATAGTTCCTCAAATCCCG  850

seq1  AATTTCCAAAGGTGTCATTTATCCAAATCACATGTG-TGCCCCCTTTGCA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATTTCCAAAGGTGTCATTTATCCAAATCACATGTGTTGCCCCCTTTGCA  900

seq1  CTCATTCTAAAAAAGAAATTTCCTTGATCAAAAATGTAAGCTTGACTACC  948
      |||||||| |||||||||||||||||||| ||||||||||||| ||||||
seq2  CTCATTCT-AAAAAGAAATTTCCTTGATC-AAAATGTAAGCTT-ACTACC  947

seq1  CCCTGGTGTATCAGCCCTTTTATTACCTACTACAAATTAAAATCCAGAAG  998
      ||||||||||||||||||||||||| |||||||||||| |||||| ||||
seq2  CCCTGGTGTATCAGCCCTTTTATTA-CTACTACAAATT-AAATCC-GAAG  994

seq1  ACTTCTAGTATATGTACCATTAATGCATCACCTTTCAGTATATTCAAACC  1048
      || |||||||||||||||||||   |||| ||||   |||||||   || 
seq2  AC-TCTAGTATATGTACCATTATGCCATCCCCTT--CGTATATT-TCACT  1040

seq1  ATTACAATAGAATAAAAAAGGAAAAATATTATGAAAAATAAACATTTAAG  1098
      |||| ||||| |||||||  ||||||   |||||||| ||    |||| |
seq2  ATTA-AATAG-ATAAAAA--GAAAAA---TATGAAAATTA---CTTTAGG  1080

seq1  ATATTAAAGATCCAATCTTTTAAAAAAAAAAAGATT  1134
      |   | ||||||  |||||||   ||||||||||||
seq2  A---TTAAGATC--ATCTTTT---AAAAAAAAGATT  1108