BAC Information

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BAC

Clone NameB6Ng01-090I24
Chromosome12 (Build37)
Map Location 89,283,771 - 89,417,394
singlet/doubletdoublet
Overlap geneLOC100039191, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315
Upstream gene2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129
Downstream geneEG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090I24.bB6Ng01-090I24.g
ACCDH902827DH902828
length1,1611,061
definitionDH902827|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I24, 5' end.DH902828|Mus musculus domesticus DNA, BAC clone: B6Ng01-090I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,416,205 - 89,417,394)(89,283,771 - 89,284,770)
sequence
gaattcctggtgattccttcccagtgggatgtattcatccaaactgtggc
taaacttggatgtggcctttgggaactaggatacatgggagaattttcat
atcaccagagagaattgtggctttaaaaccagcaaagggcagaccaagca
gttctggtttggatatattatggtggcatctgctgagcagtggtggaatg
cacatataatcttagcaatttggaggcccaggcaggcaagtctcactgag
gtctaggccagtgtggtctataaagcaaattgcaagactgctcagaatac
aggtagttctataaagaccctgtctctaaaaacaaagaaaatcgagggtg
atcaaattggtaaactgagttctccatcctcatcggtagtgatctagccc
tcacacttccctgtgtgggcagaagggctccctaaatttcttgtcattaa
tggtgtattttttacctgcttccctaggatgactctttagaagaagtcac
agaggaatgctattccccacccaccctccagaacctggcaattcagagtc
tactgagggatgaggccttagccatttctgctctcacggacctgccccag
agtctgttcccagtaatttttgaggaggccttcactgatggacatatagg
gatcttgaaggccatgatacctgtgtggcccttcccatacctttctttag
gaaagcagataaataattgcaacctggagactttgaaggctatgcttgag
ggactagatatactgcttgcacaaaaggttcaaaccaggtaggcaaaagc
aactggtattggaggatggttttctgagtgctgagaagaagcaactagag
acagagaatatttagccaaccatggatcaaagacttctgatcttcaattt
tctctttgccccacattcaacatgttcttcactggtatagaagcttatag
gtgtaggggtttagctctgtctcagctctctggcaataatgctatgcaga
tacaggagagagtagacatagccagtgagaatgggtcttttctgcatcct
tcaagtacaagtgctggtgattaggagctggatctcaggaagaagacagc
taaagatgccctcctgcaagaatgttatgcatactgagcagtgaacctgg
gtattctaggc
gaattcagtgagaaagtcatctattcagtaacattcaaatatacttctag
tagagacagtgaaactaattaggcattacaaagaagggagccaaaatagc
tctgggctggtctgcagagtatttacttgagacaatagccagtcttaccc
agacaggggaattcacaatggcctagtgaataggtgagtttaccataaaa
gatttagggaatccccctgagacaggtttcttcactaggcccaaagaaac
aacataagtcaggcatttactaagaacccctggtggtgggcttagcaata
gactagcattaagtctggctcccttcttactggcagaggcctggtccccg
ccttcttttgatgtatacattccttgttttgtgtcactataatttggcag
atgtatctctcctggtttcttgttattttgtataaaaagttttgatactc
gacttgacaattacattcagattctacacaacctctcctgttgatctgtc
tgtcatttatttcgcctactctttgtccacctgcaaccagagacccattc
tatgcaggtagggacgaaaaagggtctgcagcacttccccttggataaac
atcgtgggatcttccaagcctgctgtgtttttacatgggatgaccaccca
gaacagcagcagtagtggaggacaggcagctggagcctagaaaacaagga
gtatgctacatagggcagagctggagaggtgacccaagctcttcgaggag
cctagaagatcctgagtggattcaagtcattggatggctggagactgatt
ttgttttgattgtgactctgctggtatgtttccctcatgaagaaggcatt
ttagtggaggcacagttagagactctgaattttaaaagatttgaatattt
ttaagggattgactttttttaacagcagcaagtttttatcatgtgaactg
ttaaatgacatctttatcagtgtcaataagatgggatagagccagggtag
agtggacaggagaagagatgtgctctactgtataaagctcaggttcatca
tcatgatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89416205_89417394
seq2: B6Ng01-090I24.b_49_1209 (reverse)

seq1  GCCTAGAATTAAACCCCAAGTGTCACATGCTCAGTAAATGCATAACATTC  50
      |||||||||   ||||  ||  |||| ||||||||  |||||||||||||
seq2  GCCTAGAAT---ACCC--AGGTTCAC-TGCTCAGT--ATGCATAACATTC  42

seq1  TTTGCAAGAGGGGCATCTTTAGCCCTGTCTTCCTTCCCTTGATTCCAGGC  100
       ||||| || ||||||||||||  ||||||| |||||   || |||| ||
seq2  -TTGCAGGA-GGGCATCTTTAG--CTGTCTT-CTTCCTGAGA-TCCA-GC  85

seq1  TCCTTAATCACAAGCACTTGTACCTTTGAGGGATGCAGGAAAGACCCATT  150
      ||| ||||||| |||||||||||  |||| |||||||| ||||||||| |
seq2  TCC-TAATCACCAGCACTTGTAC--TTGAAGGATGCAGAAAAGACCCA-T  131

seq1  TCTCACTGGCTATGTCTACTCTTCTTCTGTATTCTGCATTAGCCATTATT  200
      ||||||||||||||||||||| ||| ||||| |||||| ||| |||||||
seq2  TCTCACTGGCTATGTCTACTC-TCTCCTGTA-TCTGCA-TAG-CATTATT  177

seq1  TGCCCAGAGAGCTGAGACAGAGCTTAAACCCCTACACCCTATAAGCTTCT  250
         |||||||||||||||||||| |||||||||||| |||||||||||||
seq2  --GCCAGAGAGCTGAGACAGAGC-TAAACCCCTACA-CCTATAAGCTTCT  223

seq1  ATACCCAGTGAAGAACAATGTTGAATGTGGGGCAAAGAGAAAATTGAAGA  300
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATA-CCAGTGAAGAAC-ATGTTGAATGTGGGGCAAAGAGAAAATTGAAGA  271

seq1  TCAGAAGTCTTTGATCCATGGTTGGCTAAATATTCTCTGTCTCTAGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTCTTTGATCCATGGTTGGCTAAATATTCTCTGTCTCTAGTTGC  321

seq1  TTCTTCTCAGCACTCAGAAAACCATCCTCCAATACCAGTTGCTTTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCAGCACTCAGAAAACCATCCTCCAATACCAGTTGCTTTTGCCT  371

seq1  ACCTGGTTTGAACCTTTTGTGCAAGCAGTATATCTAGTCCCTCAAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTGAACCTTTTGTGCAAGCAGTATATCTAGTCCCTCAAGCATA  421

seq1  GCCTTCAAAGTCTCCAGGTTGCAATTATTTATCTGCTTTCCTAAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAAAGTCTCCAGGTTGCAATTATTTATCTGCTTTCCTAAAGAAAG  471

seq1  GTATGGGAAGGGCCACACAGGTATCATGGCCTTCAAGATCCCTATATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAAGGGCCACACAGGTATCATGGCCTTCAAGATCCCTATATGTC  521

seq1  CATCAGTGAAGGCCTCCTCAAAAATTACTGGGAACAGACTCTGGGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGAAGGCCTCCTCAAAAATTACTGGGAACAGACTCTGGGGCAGG  571

seq1  TCCGTGAGAGCAGAAATGGCTAAGGCCTCATCCCTCAGTAGACTCTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAGAGCAGAAATGGCTAAGGCCTCATCCCTCAGTAGACTCTGAAT  621

seq1  TGCCAGGTTCTGGAGGGTGGGTGGGGAATAGCATTCCTCTGTGACTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTTCTGGAGGGTGGGTGGGGAATAGCATTCCTCTGTGACTTCTT  671

seq1  CTAAAGAGTCATCCTAGGGAAGCAGGTAAAAAATACACCATTAATGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTCATCCTAGGGAAGCAGGTAAAAAATACACCATTAATGACAA  721

seq1  GAAATTTAGGGAGCCCTTCTGCCCACACAGGGAAGTGTGAGGGCTAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAGGGAGCCCTTCTGCCCACACAGGGAAGTGTGAGGGCTAGATC  771

seq1  ACTACCGATGAGGATGGAGAACTCAGTTTACCAATTTGATCACCCTCGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCGATGAGGATGGAGAACTCAGTTTACCAATTTGATCACCCTCGAT  821

seq1  TTTCTTTGTTTTTAGAGACAGGGTCTTTATAGAACTACCTGTATTCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTTAGAGACAGGGTCTTTATAGAACTACCTGTATTCTGAG  871

seq1  CAGTCTTGCAATTTGCTTTATAGACCACACTGGCCTAGACCTCAGTGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGCAATTTGCTTTATAGACCACACTGGCCTAGACCTCAGTGAGA  921

seq1  CTTGCCTGCCTGGGCCTCCAAATTGCTAAGATTATATGTGCATTCCACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGCCTGGGCCTCCAAATTGCTAAGATTATATGTGCATTCCACCA  971

seq1  CTGCTCAGCAGATGCCACCATAATATATCCAAACCAGAACTGCTTGGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGCAGATGCCACCATAATATATCCAAACCAGAACTGCTTGGTCT  1021

seq1  GCCCTTTGCTGGTTTTAAAGCCACAATTCTCTCTGGTGATATGAAAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGCTGGTTTTAAAGCCACAATTCTCTCTGGTGATATGAAAATTC  1071

seq1  TCCCATGTATCCTAGTTCCCAAAGGCCACATCCAAGTTTAGCCACAGTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTATCCTAGTTCCCAAAGGCCACATCCAAGTTTAGCCACAGTTT  1121

seq1  GGATGAATACATCCCACTGGGAAGGAATCACCAGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATACATCCCACTGGGAAGGAATCACCAGGAATTC  1161

seq1: chr12_89283771_89284770
seq2: B6Ng01-090I24.g_155_1130

seq1  GGGAGCCAAAATAGCTCTGGGCTGGTCTGCAGAGTATTTACTTGAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAAATAGCTCTGGGCTGGTCTGCAGAGTATTTACTTGAGACAA  50

seq1  TAGCCAGTCTTACCCAGACAGGGGAATTCACAATGGCCTAGTGAATAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTCTTACCCAGACAGGGGAATTCACAATGGCCTAGTGAATAGGT  100

seq1  GAGTTTACCATAAAAGATTTAGGGAATCCCCCTGAGACAGGTTTCTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCATAAAAGATTTAGGGAATCCCCCTGAGACAGGTTTCTTCAC  150

seq1  TAGGCCCAAAGAAACAACATAAGTCAGGCATTTACTAAGAACCCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCAAAGAAACAACATAAGTCAGGCATTTACTAAGAACCCCTGGTG  200

seq1  GTGGGCTTAGCAATAGACTAGCATTAAGTCTGGCTCCCTTCTTACTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTAGCAATAGACTAGCATTAAGTCTGGCTCCCTTCTTACTGGCA  250

seq1  GAGGCCTGGTCCCCGCCTTCTTTTGATGTATACATTCCTTGTTTTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGGTCCCCGCCTTCTTTTGATGTATACATTCCTTGTTTTGTGTC  300

seq1  ACTATAATTTGGCAGATGTATCTCTCCTGGTTTCTTGTTATTTTGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTGGCAGATGTATCTCTCCTGGTTTCTTGTTATTTTGTATAA  350

seq1  AAAGTTTTGATACTCGACTTGACAATTACATTCAGATTCTACACAACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGATACTCGACTTGACAATTACATTCAGATTCTACACAACCTC  400

seq1  TCCTGTTGATCTGTCTGTCATTTATTTCGCCTACTCTTTGTCCACCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGATCTGTCTGTCATTTATTTCGCCTACTCTTTGTCCACCTGCA  450

seq1  ACCAGAGACCCATTCTATGCAGGTAGGGACGAAAAAGGGTCTGCAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCCATTCTATGCAGGTAGGGACGAAAAAGGGTCTGCAGCACT  500

seq1  TCCCCTTGGATAAACATCGTGGGATCTTCCAAGCCTGCTGTGTTTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGGATAAACATCGTGGGATCTTCCAAGCCTGCTGTGTTTTTACA  550

seq1  TGGGATGACCACCCAGAACAGCAGCAGTAGTGGAGGACAGGCAGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGACCACCCAGAACAGCAGCAGTAGTGGAGGACAGGCAGCTGGAG  600

seq1  CCTAGAAAACAAGGAGTATGCTACATAGGGCAGAGCTGGAGAGGTGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAACAAGGAGTATGCTACATAGGGCAGAGCTGGAGAGGTGACCC  650

seq1  AAGCTCTTCGAGGAGCCTAGAAGATCCTGAGTGGATTCAAGTCATTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTCGAGGAGCCTAGAAGATCCTGAGTGGATTCAAGTCATTGGAT  700

seq1  GGCTGGAGACTGATTTTGTTTTGATTGTGACTCTGCTGGTATGTTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGACTGATTTTGTTTTGATTGTGACTCTGCTGGTATGTTTCCCT  750

seq1  CATGAAGAAGGCATTTTAGTGGAGGCACAGTTAAGAGACTCTGAATTTTA  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGAAGAAGGCATTTTAGTGGAGGCACAGTT-AGAGACTCTGAATTTTA  799

seq1  AAAGATATTGAATATTTTAAAGGGATTGAACTTTTTTTTAACAGCAGCAA  850
      |||||| ||||||||||| ||||||||||   |||||||||||||||| |
seq2  AAAGAT-TTGAATATTTTTAAGGGATTGA--CTTTTTTTAACAGCAGC-A  845

seq1  AGTTTTTATTCATGTGAACTGTTAAAATGACCATCTATATCAGTGTCAAA  900
      |||||||| |||||||||||||| |||||| ||||| |||||||||| ||
seq2  AGTTTTTA-TCATGTGAACTGTT-AAATGA-CATCTTTATCAGTGTC-AA  891

seq1  TAAGGATGGGATAGGAGGGCAGGGTAGAGTTGGACAAGGAGGAGGAAGAA  950
      ||| ||||||||||   | |||||||||| |||||    |||| ||||| 
seq2  TAA-GATGGGATAG--AGCCAGGGTAGAG-TGGAC----AGGA-GAAGAG  932

seq1  TTGTGCTCTACTGGTAATAAAGCTCCAGGTTCAACCCATCATGGATTTCA  1000
       ||||||||||||   |||||||| ||||||||   |||||| |||||||
seq2  ATGTGCTCTACTG--TATAAAGCT-CAGGTTCA--TCATCAT-GATTTCA  976