BAC Information

Click to search

BAC

Clone NameB6Ng01-090O07
Chromosome12 (Build37)
Map Location 24,861,316 - 24,984,998
singlet/doubletdoublet
Overlap geneEG668710
Upstream geneLOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik
Downstream geneLOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090O07.bB6Ng01-090O07.g
ACCDH903073DH903074
length1,1341,115
definitionDH903073|Mus musculus domesticus DNA, BAC clone: B6Ng01-090O07, 5' end.DH903074|Mus musculus domesticus DNA, BAC clone: B6Ng01-090O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,861,316 - 24,862,452)(24,983,880 - 24,984,998)
sequence
gaattcttccagggacattttgcctgaggaatggaagagggagacttagg
attagccagtgctctggttaaagtctggaaccctctggaaaatggacaat
gtccagtctcttctctctctctctctccctgcctctctacctcggttcct
ccctccctcatttcctcccttttgttttgtttattgaaacagggtttctc
tgtgtaacagccctggctgttctagaactcacattttagaccaggttgcc
ttgaactcccagagagcctcctgtcttctatgagctcccattaaagacat
gtgccactatgcctgaccagagggtaatttcttaacaagtgattgatgga
ggagggcccagcccattgtaggtggtacaaccctggtctagtgattctga
gttctataagaaagaaggctgagcaagccatggggagcaagccagtaagt
agcaaccctttcatggtctctgtatcagctcctgccttcaggttgctgcc
ttgtttgagtcctgccctcactgcttttgatgatgaacagttatatggaa
actgtgagtgaataaaccctttcctccccaagttgcttgtggccatggtg
tgtcatcagtgcaatggaaaccctaactcaatgcggatgaagactacagc
tcagagggtctactgacaatgcccatggttatagagccctagaaagggtg
caggatgcaggctaggtgtatctgaccctgaattctagtctccctccctc
aatcagagctgaatcaagtgggttggaaaagggcaggcctgcacagggca
gagggtatatcccaaacacctctctgccatcaacagtttcacaggctcat
atacttctctctcccaacccccatcccatcccctctcccaatcccctcct
ccctccccacctgctcaatcctgccatgtttcctaccatctttgtttgtg
tccatctgtctgaagatcttgtctgttcgcttctcggcatgggctcgtcc
tcaggcatcttcatcatggaggacaccatcttgtaaatggcctgcaaagg
catctgtgatgttctctggaggatgaagggtggttattgtcctcgccttt
gctaaccaaagagccatggacagggcagagtcag
gaattcatggatggaagaattaatatgctagtgagtgactgaaaatttgt
ggatcagaaaattgatatcaagaagatagtgtgtttccctcccccttgct
ttcgtggaagttcacttactaggtttctcagagtctgtctcagtaaggaa
agacccctcaaagtgtagaatttagccaaaaaacagaagcacccccactg
gtgtcacttgtgctcagagctatgctgtaagctcatgacacggacttcag
agtcactccagcatcagctgcagctgttaaatataatcgacaaatcatga
aagtgcattttctttgatccaagctaaaattagcacacggccctgcaaag
ccttctagacatgtagccttttctggtaaatacagcttagaaactagtcc
attgtgatttctaagctggttatttaccacaggatggaccacagggggag
ggtactcagaagtgagcttgagcagaaagccgcctgtacaaagggtacag
agaggaggatggggcaggaaggaagggtacagagccgaggatggggcagg
aaggttcattattaggagaccctatggtcgcctccccacagaatcttctc
tgcaattttctaactataggaagagccatcagtgacagtaacaacgcaga
tctacacaagctctgaaactgcatcagataccatgcacacagaatgcatg
tgtctgtgcgagaacacaatcatgatatgacaaagctgtgtgggatggta
gcagtgtccctatccctgacttcaatatcactgtagctgtgcaggacagg
accaggggtgaacctgaaggacagatgcatggacccagctgcagcttcct
ctgggtctgtcattatttaaacaccaaattaaatttttatttaatttttt
aaaacagggctgtgggggagacatggcttagtgcattaaaaaaattgttc
gatgtaagcatgaagaccagaatcagttctctagaaccatgtatagctgg
gcagatattggcagttacttgtaattcagcatcttgagagaacagacggg
acatccttagggcagctgcctgctagcttacttgatcagcagctacagtt
caggaaactgcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24861316_24862452
seq2: B6Ng01-090O07.b_50_1183

seq1  GAATTCTTCCAGGGACATTTTGCCTGAGGAATGGAAGAGGGAGACTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGGGACATTTTGCCTGAGGAATGGAAGAGGGAGACTTAGG  50

seq1  ATTAGCCAGTGCTCTGGTTAAAGTCTGGAACCCTCTGGAAAATGGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCAGTGCTCTGGTTAAAGTCTGGAACCCTCTGGAAAATGGACAAT  100

seq1  GTCCAGTCTCTTCTCTCTCTCTCTCTCCCTGCCTCTCTACCTCGGTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCTCTTCTCTCTCTCTCTCTCCCTGCCTCTCTACCTCGGTTCCT  150

seq1  CCCTCCCTCATTTCCTCCCTTTTGTTTTGTTTATTGAAACAGGGTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCATTTCCTCCCTTTTGTTTTGTTTATTGAAACAGGGTTTCTC  200

seq1  TGTGTAACAGCCCTGGCTGTTCTAGAACTCACATTTTAGACCAGGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACAGCCCTGGCTGTTCTAGAACTCACATTTTAGACCAGGTTGCC  250

seq1  TTGAACTCCCAGAGAGCCTCCTGTCTTCTATGAGCTCCCATTAAAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCCCAGAGAGCCTCCTGTCTTCTATGAGCTCCCATTAAAGACAT  300

seq1  GTGCCACTATGCCTGACCAGAGGGTAATTTCTTAACAAGTGATTGATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTATGCCTGACCAGAGGGTAATTTCTTAACAAGTGATTGATGGA  350

seq1  GGAGGGCCCAGCCCATTGTAGGTGGTACAACCCTGGTCTAGTGATTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCCAGCCCATTGTAGGTGGTACAACCCTGGTCTAGTGATTCTGA  400

seq1  GTTCTATAAGAAAGAAGGCTGAGCAAGCCATGGGGAGCAAGCCAGTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATAAGAAAGAAGGCTGAGCAAGCCATGGGGAGCAAGCCAGTAAGT  450

seq1  AGCAACCCTTTCATGGTCTCTGTATCAGCTCCTGCCTTCAGGTTGCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCTTTCATGGTCTCTGTATCAGCTCCTGCCTTCAGGTTGCTGCC  500

seq1  TTGTTTGAGTCCTGCCCTCACTGCTTTTGATGATGAACAGTTATATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGTCCTGCCCTCACTGCTTTTGATGATGAACAGTTATATGGAA  550

seq1  ACTGTGAGTGAATAAACCCTTTCCTCCCCAAGTTGCTTGTGGCCATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTGAATAAACCCTTTCCTCCCCAAGTTGCTTGTGGCCATGGTG  600

seq1  TGTCATCAGTGCAATGGAAACCCTAACTCAATGCGGATGAAGACTACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGTGCAATGGAAACCCTAACTCAATGCGGATGAAGACTACAGC  650

seq1  TCAGAGGGTCTACTGACAATGCCCATGGTTATAGAGCCCTAGAAAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGTCTACTGACAATGCCCATGGTTATAGAGCCCTAGAAAGGGTG  700

seq1  CAGGATGCAGGCTAGGTGTATCTGACCCTGAATTCTAGTCTCCCTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCAGGCTAGGTGTATCTGACCCTGAATTCTAGTCTCCCTCCCTC  750

seq1  AATCAGAGCTGAATCAAGTGGGTTGGAAAAGGGCAGGCCTGCACAGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGCTGAATCAAGTGGGTTGGAAAAGGGCAGGCCTGCACAGGGCA  800

seq1  GAGGGTATATCCCAAACACCTCTCTGCCATCAACAGTTTCACAGGCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATATCCCAAACACCTCTCTGCCATCAACAGTTTCACAGGCTCAT  850

seq1  ATACTTCTCTCTCCCAACCCCCATCCCATCCCCTCTCCCAATCCCCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCTCTCTCCCAACCCCCATCCCATCCCCTCTCCCAATCCCCTCCT  900

seq1  CCCTCCCCACCTGCTCAATCCTGCCATGTTTCCTACCATCTTTGTTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCACCTGCTCAATCCTGCCATGTTTCCTACCATCTTTGTTTGTG  950

seq1  TCCATCTGTCTGAAGATCTTGTCTGTTCGCTTCTCGGGCATGGGCTCGTC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCATCTGTCTGAAGATCTTGTCTGTTCGCTTCTC-GGCATGGGCTCGTC  999

seq1  CTCAGGCATCTTCATCATGGAGGACACCATCTTGTAGATGGCCTGCAAAG  1050
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CTCAGGCATCTTCATCATGGAGGACACCATCTTGTAAATGGCCTGCAAA-  1048

seq1  GGGCATCTGTGAGTGTTCTCTGGAGGATGAAGGGTGGGTTATGGTCCTCG  1100
       ||||||||||| |||||||||||||||||||||| |||||| |||||||
seq2  -GGCATCTGTGA-TGTTCTCTGGAGGATGAAGGGT-GGTTATTGTCCTCG  1095

seq1  -CTCTGCTAACCAAGGAG-CATGGACAGGGCAGAGTCAG  1137
       || |||||||||| ||| ||||||||||||||||||||
seq2  CCTTTGCTAACCAAAGAGCCATGGACAGGGCAGAGTCAG  1134

seq1: chr12_24983880_24984998
seq2: B6Ng01-090O07.g_67_1181 (reverse)

seq1  TGAGGCCAGTTCTCCTGAACTGTAGCTTGCTGATTCCAGGTAAGCTAGCC  50
      ||||| ||||| |||||||||||||| |||||||  || ||||||||| |
seq2  TGAGG-CAGTT-TCCTGAACTGTAGC-TGCTGAT--CAAGTAAGCTAG-C  44

seq1  AGGCAGCTGGCCCTGAGGATGTCCCGTCTG-TCTCTC-AGATGCTGGAAT  98
      |||||||| ||||| ||||||||||||||| |||||| ||||||| ||||
seq2  AGGCAGCT-GCCCTAAGGATGTCCCGTCTGTTCTCTCAAGATGCT-GAAT  92

seq1  TACAGGTAACTGCC-ATATCTGCCCAGCTATTACATGGTTCTAGAGATCT  147
      |||| ||||||||| ||||||||||||||| |||||||||||||||| ||
seq2  TACAAGTAACTGCCAATATCTGCCCAGCTA-TACATGGTTCTAGAGAACT  141

seq1  GATTTCTGGTCTTCATGCTTACATCGAAC-ATTTTTTTTATGCACTAAGC  196
      || |||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GA-TTCTGGTCTTCATGCTTACATCGAACAATTTTTTTAATGCACTAAGC  190

seq1  CATTGTCT-CCCCACAGCCCTGTTTTAAAAAATTAAAT-AAAATTTAATT  244
      || ||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CA-TGTCTCCCCCACAGCCCTGTTTTAAAAAATTAAATAAAAATTTAATT  239

seq1  TGGTGTTTAAATAATGACAGACCCAGAGGAAGCTGCAGCTGGGTCCATGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTAAATAATGACAGACCCAGAGGAAGCTGCAGCTGGGTCCATGC  289

seq1  ATCTGTCCTTCAGGTTCACCCCTGGTCCTGTCCTGCACAGCTACAGTGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTTCAGGTTCACCCCTGGTCCTGTCCTGCACAGCTACAGTGAT  339

seq1  ATTGAAGTCAGGGATAGGGACACTGCTACCAT-CCACACAGCTTTGTCAT  393
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTGAAGTCAGGGATAGGGACACTGCTACCATCCCACACAGCTTTGTCAT  389

seq1  ATCATGATTGTGTTCTCGCACAGACACATGCATTCTGTGTGCATGGTATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTGTGTTCTCGCACAGACACATGCATTCTGTGTGCATGGTATC  439

seq1  TGATGCAGTTTCAGAGCTTGTGTAGATCTGCGTTGTTACTGTCACTGATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTTTCAGAGCTTGTGTAGATCTGCGTTGTTACTGTCACTGATG  489

seq1  GCTCTTCCTATAGTTAGAAAATTGCAGAGAAGATTCTGTGGGGAGGCGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTATAGTTAGAAAATTGCAGAGAAGATTCTGTGGGGAGGCGAC  539

seq1  CATAGGGTCTCCTAATAATGAACCTTCCTGCCCCATCCTCGGCTCTGTAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGTCTCCTAATAATGAACCTTCCTGCCCCATCCTCGGCTCTGTAC  589

seq1  CCTTCCTTCCTGCCCCATCCTCCTCTCTGTACCCTTTGTACAGGCGGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTGCCCCATCCTCCTCTCTGTACCCTTTGTACAGGCGGCTT  639

seq1  TCTGCTCAAGCTCACTTCTGAGTACCCTCCCCCTGTGGTCCATCCTGTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCAAGCTCACTTCTGAGTACCCTCCCCCTGTGGTCCATCCTGTGG  689

seq1  TAAATAACCAGCTTAGAAATCACAATGGACTAGTTTCTAAGCTGTATTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACCAGCTTAGAAATCACAATGGACTAGTTTCTAAGCTGTATTTA  739

seq1  CCAGAAAAGGCTACATGTCTAGAAGGCTTTGCAGGGCCGTGTGCTAATTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGGCTACATGTCTAGAAGGCTTTGCAGGGCCGTGTGCTAATTT  789

seq1  TAGCTTGGATCAAAGAAAATGCACTTTCATGATTTGTCGATTATATTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGATCAAAGAAAATGCACTTTCATGATTTGTCGATTATATTTAA  839

seq1  CAGCTGCAGCTGATGCTGGAGTGACTCTGAAGTCCGTGTCATGAGCTTAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAGCTGATGCTGGAGTGACTCTGAAGTCCGTGTCATGAGCTTAC  889

seq1  AGCATAGCTCTGAGCACAAGTGACACCAGTGGGGGTGCTTCTGTTTTTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCTCTGAGCACAAGTGACACCAGTGGGGGTGCTTCTGTTTTTTG  939

seq1  GCTAAATTCTACACTTTGAGGGGTCTTTCCTTACTGAGACAGACTCTGAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTCTACACTTTGAGGGGTCTTTCCTTACTGAGACAGACTCTGAG  989

seq1  AAACCTAGTAAGTGAACTTCCACGAAAGCAAGGGGGAGGGAAACACACTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTAAGTGAACTTCCACGAAAGCAAGGGGGAGGGAAACACACTA  1039

seq1  TCTTCTTGATATCAATTTTCTGATCCACAAATTTTCAGTCACTCACTAGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGATATCAATTTTCTGATCCACAAATTTTCAGTCACTCACTAGC  1089

seq1  ATATTAATTCTTCCATCCATGAATTC  1119
      ||||||||||||||||||||||||||
seq2  ATATTAATTCTTCCATCCATGAATTC  1115