BAC Information

Click to search

BAC

Clone NameB6Ng01-091C04
Chromosome12 (Build37)
Map Location 107,963,861 - 108,109,704
singlet/doubletdoublet
Overlap genenone
Upstream geneAk7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091C04.bB6Ng01-091C04.g
ACCDH903249DH903250
length3101,103
definitionDH903249|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C04, 5' end.DH903250|Mus musculus domesticus DNA, BAC clone: B6Ng01-091C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,963,861 - 107,964,168)(108,108,589 - 108,109,704)
sequence
cttcagccatcgggaacaggagctgaaagaaagcagatctcaagggacaa
gaaagataaggatgtgggttgaccacatgggatagagtccagccagaaat
gcacagggcacacaactgagtagtgcatctagatcctgccctacccgcct
gaggggaactgttccaacctcctatgcttctctccttacaggattctcta
tgcatggtcagccatcaggtttctgcaggcctgaatgttgtaggcaaagc
agtaagaagcctctggaagctatcaaggtaacttcccttcccttcccttc
ccttccctta
gaattctgtaaaatttgcctgggagctaaacttaaaagagtcattttaag
agaccaccaggtagatcacactgtgccaagggagtagacatttaagccat
agaagcttagacagcagagcgaggggatagagatgctcagagggagtcat
ggtctgactggactctgaactcatttgtttcatgtgtgaacgaggtctgt
actttccttgtgtcccagaagacttcgacattcatcccacccatccccct
ccaagatcaatgaggtctccttggcaagggtgtttctccaacaatgtcag
ggaagagttttctcttctgtaacgtcatagcagaaggacccctagaccct
tgaccttgacccggtgtctgcatgaatgcctccttcctctggcttcgctc
tgaggatgagttctaggtgcaccaaatttagttaatgagttccaaataat
gtggctgttatgaacactttcaggaccttgtgtgtttaggagatacaaag
tgtccagaagttgggaagctcgagagatgtgcctgctctcagacagttac
tggtgactctaggaaggtttgaagccactttgcctcctggaactcacaat
gaaatatccctttaagtttgaggctgggctcactacttacttttacattc
aagtaattaattgtttttcaatcttcagctttcaaattacatatttctat
ccccattgtaaatctagtcttccagggtagtgtatgctaacccttgaaag
agaattcatgtgttaaaataaataaatctgctgaccattttattttggca
gagcaatccaattgcatttaattttgcatacaaagttttcctataatctg
aactttgattcctttggccctcgggaagccagacactcaggcgaacatat
tttgaggagaggactatgcatgaagtgtgaggacagaaggtggcaggtgg
gagagactcagtacgaggtatgtggggggaggagctgattatataactta
tggaagcagagcagcttcttgggggtgcatccatgagcttcatggaaaag
tgatatgggtgaatcatagataccgattcaagtctcagtcccccaccata
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107963861_107964168
seq2: B6Ng01-091C04.b_52_360

seq1  CTTCAGCCATCGGGAACAGGAGCTG-AGGAAAGCAGATCTCAAGGGACAA  49
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  CTTCAGCCATCGGGAACAGGAGCTGAAAGAAAGCAGATCTCAAGGGACAA  50

seq1  GAAAGATAAGGATGTGGGTTGACCACATGGGATAGAGTCCAGCCAGAAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAAGGATGTGGGTTGACCACATGGGATAGAGTCCAGCCAGAAAT  100

seq1  GCACAGGGCACACAACTGAGTAGTGCATCTAGATCCTGCCCTACCCGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGCACACAACTGAGTAGTGCATCTAGATCCTGCCCTACCCGCCT  150

seq1  GAGGGGAACTGTTCCAACCTCCTATGCTTCTCTCCTTACAGGATTCTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAACTGTTCCAACCTCCTATGCTTCTCTCCTTACAGGATTCTCTA  200

seq1  TGCATGGTCAGCCATCAGGTTTCTGCAGGCCTGAATGTTGTAGGCAAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTCAGCCATCAGGTTTCTGCAGGCCTGAATGTTGTAGGCAAAGC  250

seq1  AGTAAGAAGCCTCTGGAAGCTATCAAGGTAACTTCCCTTCCCTTCCCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAGCCTCTGGAAGCTATCAAGGTAACTTCCCTTCCCTTCCCTTC  300

seq1  CCTTCCCTT  308
      |||||||||
seq2  CCTTCCCTT  309

seq1: chr12_108108589_108109704
seq2: B6Ng01-091C04.g_68_1170 (reverse)

seq1  TATTATTGGTGGGGGACATGGACCTTGGAATTCCGTCTTCTATGATTCAC  50
      ||||| |||||||||||   |||  | ||||  ||   ||||||||||||
seq2  TATTA-TGGTGGGGGACTGAGAC--TTGAAT--CGGTATCTATGATTCAC  45

seq1  CCATATCACTCTTCCCATGAGGCTCATGGATGCCACCCCAAGAAGCTGCT  100
      |||||||||| || |||||| ||||||||||||  |||||||||||||||
seq2  CCATATCACT-TTTCCATGAAGCTCATGGATGCACCCCCAAGAAGCTGCT  94

seq1  CTGGCTTTCCATAGTTTATATAATCAGCTCCTCCCCCCACATACCTCGTA  150
      |||   |||||||  |||||||||||||||||||||||||||||||||||
seq2  CTG--CTTCCATAAGTTATATAATCAGCTCCTCCCCCCACATACCTCGTA  142

seq1  CTGAGTCCTCTCCCACCTTGCCACCTTTCTGTCCTCACACTTCATGCATA  200
      |||||| |||||||||| ||||||| ||||||||||||||||||||||||
seq2  CTGAGT-CTCTCCCACC-TGCCACC-TTCTGTCCTCACACTTCATGCATA  189

seq1  GTCCTTCTCCTCAAAATATGTTCGCCTTGAGTGTCTGGCTTCCCGAGGGC  250
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCC-TCTCCTCAAAATATGTTCGCC-TGAGTGTCTGGCTTCCCGAGGGC  237

seq1  CAAAGGAATCAAAGTTCAGATTATAGGAAAACTTTGTATGCAAAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATCAAAGTTCAGATTATAGGAAAACTTTGTATGCAAAATTAAA  287

seq1  TGCAATTGGATTGCTCTGCCAAAATAAAATGGTCAGCAGATTTATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGGATTGCTCTGCCAAAATAAAATGGTCAGCAGATTTATTTATT  337

seq1  TTAACACATGAATTCTCTTTCAAGGGTTAGCATACACTACCCTGGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACATGAATTCTCTTTCAAGGGTTAGCATACACTACCCTGGAAGAC  387

seq1  TAGATTTACAATGGGGATAGAAATATGTAATTTGAAAGCTGAAGATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTACAATGGGGATAGAAATATGTAATTTGAAAGCTGAAGATTGAA  437

seq1  AAACAATTAATTACTTGAATGTAAAAGTAAGTAGTGAGCCCAGCCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTAATTACTTGAATGTAAAAGTAAGTAGTGAGCCCAGCCTCAAA  487

seq1  CTTAAAGGGATATTTCATTGTGAGTTCCAGGAGGCAAAGTGGCTTCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGGATATTTCATTGTGAGTTCCAGGAGGCAAAGTGGCTTCAAAC  537

seq1  CTTCCTAGAGTCACCAGTAACTGTCTGAGAGCAGGCACATCTCTCGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAGTCACCAGTAACTGTCTGAGAGCAGGCACATCTCTCGAGCT  587

seq1  TCCCAACTTCTGGACACTTTGTATCTCCTAAACACACAAGGTCCTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTTCTGGACACTTTGTATCTCCTAAACACACAAGGTCCTGAAAG  637

seq1  TGTTCATAACAGCCACATTATTTGGAACTCATTAACTAAATTTGGTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAACAGCCACATTATTTGGAACTCATTAACTAAATTTGGTGCAC  687

seq1  CTAGAACTCATCCTCAGAGCGAAGCCAGAGGAAGGAGGCATTCATGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCATCCTCAGAGCGAAGCCAGAGGAAGGAGGCATTCATGCAGA  737

seq1  CACCGGGTCAAGGTCAAGGGTCTAGGGGTCCTTCTGCTATGACGTTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGTCAAGGTCAAGGGTCTAGGGGTCCTTCTGCTATGACGTTACAG  787

seq1  AAGAGAAAACTCTTCCCTGACATTGTTGGAGAAACACCCTTGCCAAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAACTCTTCCCTGACATTGTTGGAGAAACACCCTTGCCAAGGAG  837

seq1  ACCTCATTGATCTTGGAGGGGGATGGGTGGGATGAATGTCGAAGTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTGATCTTGGAGGGGGATGGGTGGGATGAATGTCGAAGTCTTCT  887

seq1  GGGACACAAGGAAAGTACAGACCTCGTTCACACATGAAACAAATGAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAAGGAAAGTACAGACCTCGTTCACACATGAAACAAATGAGTTC  937

seq1  AGAGTCCAGTCAGACCATGACTCCCTCTGAGCATCTCTATCCCCTCGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGTCAGACCATGACTCCCTCTGAGCATCTCTATCCCCTCGCTC  987

seq1  TGCTGTCTAAGCTTCTATGGCTTAAATGTCTACTCCCTTGGCACAGTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTAAGCTTCTATGGCTTAAATGTCTACTCCCTTGGCACAGTGTG  1037

seq1  ATCTACCTGGTGGTCTCTTAAAATGACTCTTTTAAGTTTAGCTCCCAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGGTGGTCTCTTAAAATGACTCTTTTAAGTTTAGCTCCCAGGC  1087

seq1  AAATTTTACAGAATTC  1116
      ||||||||||||||||
seq2  AAATTTTACAGAATTC  1103