BAC Information

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BAC

Clone NameB6Ng01-091L10
Chromosome12 (Build37)
Map Location 100,707,458 - 100,830,561
singlet/doubletdoublet
Overlap geneLOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091L10.bB6Ng01-091L10.g
ACCDH903664DH903665
length1,0051,045
definitionDH903664|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L10, 5' end.DH903665|Mus musculus domesticus DNA, BAC clone: B6Ng01-091L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,830,001 - 100,830,561)(100,707,458 - 100,708,523)
sequence
gaattcaggacaagcctcatctactgaactatctgagacctggcctcaaa
agaccaaaagccactccactattctatcaaaccagctggtgcaagaaaat
gtggtgaaaccagtgaattctatacagtttcatttgccataatgtgagtt
cctttgtcagaaacaacactacttgaaatgctatgatgatatatggtaat
tttgtatttggggcaaaagcattgcatgcagagaagttgcatacagacca
atttcctattctgacaaagaggcagtctcctgctacttctttggtagtag
tcaaatgtgcccaccttggcagcagggcatgtggatgtacctctggggat
ggtgtcacataaagagtcagcattgatctctgctgctggaactgggtcct
tggaacaggtaactgcccggtcaactttgatggtgggagtccctgttact
gaccctgggtgtgactgccatgcctgccaccacaatcacttgggttatgg
ccccgctggaaatggttaggaaaatgatttttacagaactggccacctac
cctctgacaactcactctttagtgagatctcttctactctcctctcctct
ccaagatcctacacctgcccctggacactgtagactctcacaggcttgtg
catatgactgaacacagacacgcacaaatacacataaatcagtagtaaga
tagctcatttttacaaatgaaaactaaatagaaaaaaaaaaaagctgaag
cactttgctttcacaactgtgtcttatagaagacctggccaaatgtgaat
ttaaatacagaaactaccatattgtcaccagaaagaaacttgtgtttatt
gaaaacattcagtttcctgaattggctgatttgtgtctttttttccttcc
tcagcacagacaagcgaaggatctgggtcagtgtagacacggccagtaag
tgatcccttgtagtagagttcactgaaaaatatgccatacttgcagaagg
caatt
gaattcctgggtggtaacgtaaggagctgccgggcaggggaaagaatgat
caagttgccccatggatagaaaggaacagtgacaaatgaggactgccttc
tgtgacagtccttagcctccaggaaacactggagaaatttgaaaatttga
catcaaaaaaccaagacccaataatcattcaagagtggagcgaaggcttg
gccgaactgttctttctatcggattatgaaccacacatcaccctgtctta
actttactgtaaggggatactctaaacacagtctgaaagatacggactct
aactttattaggtcatgctgctgatatacacatataaagggatgtgtgcg
gctaattcagaaacagcaaggaaagagtaatgtcttgctggtgcctctgc
tccaagtaatccatgcagagtacgacagacacctcatgctgtcctctgac
ccctccatgagctcagtggcacactgcccccccacattcattcacacgaa
cgctcacatgcatacacccacacacacccccacacaaggctgtgccagtc
tatagtgacgtaagctcagagatcacacattatgaaatagcttttcaaag
catttaaataatgaagctgcaacaacctaactgtgaaataagaaaaatat
cataatcccattttatcagtaagcagtgtagtgatttgtagacccagatc
cctcatgtattaataactgttgagtcagacttagaactgtcagactccat
gctctgtacccagggcatggatctgtgggcttcatcccctcccgagaggg
taacgaaagatgatgcctgaacctatcatggactctcagttcacagaata
cctatatttattatgatagctatattttcgcagactcaacgcaactgctg
tcctactactgggctcatgaatcatctagtaaaggatgatgatcatctat
tcacgcaatggcgtgcatgcagatcagaatacactgctgtgaggtagatg
ctgaagatgttcgtacaagacgcagatatatgagtcagtcttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100830001_100830561
seq2: B6Ng01-091L10.b_84_644 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGAAGAGATCTCACTAAAGAGTGAGTTGTCAGA  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAGGAGAGTAGAAGAGATCTCACTAAAGAGTGAGTTGTCAGA  50

seq1  GGGTAGGTGGCCTACTATGTAATTATCATTTTCCTAGCCACTTCCAGTGG  100
      ||||||||||||   | |||||  |||||||||||| ||| |||||| ||
seq2  GGGTAGGTGGCCAGTTCTGTAAAAATCATTTTCCTAACCATTTCCAGCGG  100

seq1  GGCCATAAGCCAAGTGACTGTGGTGGCAGGCATGGAAGTCACACCCAGTG  150
      |||||||| |||||||| ||||||||||||||||| |||||||||||| |
seq2  GGCCATAACCCAAGTGATTGTGGTGGCAGGCATGGCAGTCACACCCAGGG  150

seq1  TCACTGACATGGACTCCCACCCTCAAAGTTGACCTGGCTGTAACCTCTTC  200
      ||| | ||| ||||||||||| |||||||||||| ||| || |||| |||
seq2  TCAGTAACAGGGACTCCCACCATCAAAGTTGACCGGGCAGTTACCTGTTC  200

seq1  CAAGGACCCAGTTCCAGCAGCAGAGATCAATGCTGACTCTTTATGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCCAGTTCCAGCAGCAGAGATCAATGCTGACTCTTTATGTGACA  250

seq1  CCATCCCCAGAGGTACATCCACATGCCCTGCTGCCAAGGTGGGCACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCAGAGGTACATCCACATGCCCTGCTGCCAAGGTGGGCACATTT  300

seq1  GACTACTACCAAAGAAGTAGCAGGAGACTGCCTCTTTGTCAGAATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTACCAAAGAAGTAGCAGGAGACTGCCTCTTTGTCAGAATAGGAA  350

seq1  ATTGGTCTGTATGCAACTTCTCTGCATGCAATGCTTTTGCCCCAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTGTATGCAACTTCTCTGCATGCAATGCTTTTGCCCCAAATACA  400

seq1  AAATTACCATCTATCATCATAGCATTTCAAGTAGTGTTGTTTCTGACAAA  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCATATATCATCATAGCATTTCAAGTAGTGTTGTTTCTGACAAA  450

seq1  GGAACTCACATTATGGCAAATGAAACTGTATAGAATTCACTGGTTTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACATTATGGCAAATGAAACTGTATAGAATTCACTGGTTTCACC  500

seq1  ACATTTTCTTGCACCAGCTGGTTTGATAGAATAGTGGAGTGGCTTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTGCACCAGCTGGTTTGATAGAATAGTGGAGTGGCTTTTGGT  550

seq1  CTTTTGAGGCC  561
      |||||||||||
seq2  CTTTTGAGGCC  561

seq1: chr12_100707458_100708523
seq2: B6Ng01-091L10.g_67_1111

seq1  GAATTCCAGGGTGGTAACGTAAGGAGCTGCCGGGCAGGGGAAAGAATGAT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTGGTAACGTAAGGAGCTGCCGGGCAGGGGAAAGAATGAT  50

seq1  CAAGTTGCCCCATGGATAGAAAGTAACAGTGACAAATGAGGACTGCCTTC  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGTTGCCCCATGGATAGAAAGGAACAGTGACAAATGAGGACTGCCTTC  100

seq1  TGTGACAGTCCTTAGCAAGCCAGGAAACACTGGAGAAATTTGAGAATTTG  150
      ||||||||||||||||   |||||||||||||||||||||||| ||||||
seq2  TGTGACAGTCCTTAGC-CTCCAGGAAACACTGGAGAAATTTGAAAATTTG  149

seq1  ACATCTAAAAACCAAGACCCAATAATCATTCAAGAGTGGAGCGAAGGCTT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAAAACCAAGACCCAATAATCATTCAAGAGTGGAGCGAAGGCTT  199

seq1  GGCCGAACTGTTCTTTCTATCGGATTATAAACCACACATCACCCTGTCTT  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCCGAACTGTTCTTTCTATCGGATTATGAACCACACATCACCCTGTCTT  249

seq1  AACTTTACTGTAAGGGGATACTCTAAACACAGTCTGAAAGATACGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTACTGTAAGGGGATACTCTAAACACAGTCTGAAAGATACGGACTC  299

seq1  TAACTTTATTAGGTCATGCTGCTGATATACACATATAAAGGGATGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTATTAGGTCATGCTGCTGATATACACATATAAAGGGATGTGTGC  349

seq1  GGCTAATTCAGAAACAGCAAGGAAAGAGTAATGTCTTGCTGGTGCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTCAGAAACAGCAAGGAAAGAGTAATGTCTTGCTGGTGCCTCTG  399

seq1  CTCCAAGTAATCCATGCAGAGTAGGACAGACACCTCAGGCTGTCCTCTGA  450
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  CTCCAAGTAATCCATGCAGAGTACGACAGACACCTCATGCTGTCCTCTGA  449

seq1  CCCCTCCATGAGCTCAGTGGCACACTGCCCCCCCACATTCATTCACACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCATGAGCTCAGTGGCACACTGCCCCCCCACATTCATTCACACGA  499

seq1  ACGCTCACATGCATACACCCACACACACCCCCACACAAGGCTGTGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCACATGCATACACCCACACACACCCCCACACAAGGCTGTGCCAGT  549

seq1  CTATAGTGACGTAAGCTCAGAGATCACACATTTAAGAATAGCTTTTCAAA  600
      ||||||||||||||||||||||||||||||||    ||||||||||||||
seq2  CTATAGTGACGTAAGCTCAGAGATCACACATTATGAAATAGCTTTTCAAA  599

seq1  GCATTTAGATAATGAAGCTGCAGCAACCTAACTGTGAAATAAGAAAAATA  650
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  GCATTTAAATAATGAAGCTGCAACAACCTAACTGTGAAATAAGAAAAATA  649

seq1  TCATAATCCCATTTTATCAGTAAGCAGTGTAGTGATTTGTAGACCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATAATCCCATTTTATCAGTAAGCAGTGTAGTGATTTGTAGACCCAGAT  699

seq1  CCCTCAGGTATTAATAACAGTTGAGTCAGAATTAGAACTGTAAGACTCCA  750
      |||||| ||||||||||| ||||||||||| |||||||||| ||||||||
seq2  CCCTCATGTATTAATAACTGTTGAGTCAGACTTAGAACTGTCAGACTCCA  749

seq1  GGCTCTGTAGCCAGGCCATGGAGCTGTGGGCTTCATCCCATCCGGAGAGG  800
       |||||||| ||||| |||||| |||||||||||||||| ||| ||||||
seq2  TGCTCTGTACCCAGGGCATGGATCTGTGGGCTTCATCCCCTCCCGAGAGG  799

seq1  GTAAGGTAAGATGATGCCTGAACCTAGCATGGACCAGTCAGTTCCACAGA  850
      |||| | ||||||||||||||||||| |||||| |  |||||| ||||||
seq2  GTAACGAAAGATGATGCCTGAACCTATCATGGA-CTCTCAGTT-CACAGA  847

seq1  ATACCTATATTTATTATGATAGCCAATATTTTCACAGTCCTCCAAGGCAA  900
      |||||||||||||||||||||| | |||||||| ||| |   ||| ||||
seq2  ATACCTATATTTATTATGATAG-CTATATTTTCGCAGAC--TCAACGCAA  894

seq1  CCAGCCTTCCTACTACTGGGCCCATAAATAATCTAGCAAAAGATGATGAG  950
       | ||  |||||||||||||| ||| ||| |||||| ||| |||||||| 
seq2  -CTGCTGTCCTACTACTGGGCTCATGAATCATCTAGTAAAGGATGATGAT  943

seq1  CATTTATTCAGGGAAATGGCCTGGTATACAGTTCAAGACATACACCTGCT  1000
      ||| ||||||  | |||||| | | || ||| || ||| ||||| |||||
seq2  CATCTATTCA-CGCAATGGCGT-GCATGCAGATC-AGA-ATACA-CTGCT  988

seq1  GTAGAGGGTAGGTTACTGTGGGATGTGTGTACAGAGAAGGCAGGATAATT  1050
      || || |||| | | |||   |||||  ||||| || | ||| ||||  |
seq2  GT-GA-GGTA-GATGCTG-AAGATGTTCGTACA-AG-ACGCA-GATA--T  1029

seq1  ATGGGTCAGTCTTGGT  1066
      ||| ||||||||||||
seq2  ATGAGTCAGTCTTGGT  1045