BAC Information

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BAC

Clone NameB6Ng01-091P13
Chromosome12 (Build37)
Map Location 104,773,415 - 104,940,257
singlet/doubletdoublet
Overlap gene8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316
Upstream geneChga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik
Downstream geneSerpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091P13.bB6Ng01-091P13.g
ACCDH903860DH903861
length1,0961,119
definitionDH903860|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P13, 5' end.DH903861|Mus musculus domesticus DNA, BAC clone: B6Ng01-091P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,773,415 - 104,774,524)(104,939,123 - 104,940,257)
sequence
gaattccttaagattcttccccctcttcctcagattcagggccttgtctg
tgttacacaaagtgtttaccacagaactgcaccctcagcctctcttcagg
actttccttcaatattcttcctggtggcaccatgagtttctcttcttact
gtgtatcagtgtactttccatttggaccctactgatcatggtcttcgata
attataccaaacaaaacccaaaccaaatggataaaccaacagataaacac
acgaacaaaagcaagcaagcagacaaaacaaagtgaaggtgggcttggtg
ggtacacctgtaatcccaaagctgatgcagaagaattgctgtgcattcaa
agacagcctgggctccgcagggaatcccagggcagccggtgcttcatagt
gagtcctttcctgtcaattggctttcaccgtaaatcttcttgtgcaaatg
aacagacagttgaagaatattgagtaaatttcttttgatatggagcagtt
aatgatcataaaacaggtcttgctattcgtatggcatgctttgtttcctt
gtagggcaacccctggcttagtgtcaggaaacagagagccttgctctact
taagctgacagcagacacctcattctagatgtcaatgataacctatttct
ttttaaggttttcactttgcttttattgttggttagagacaactaagttg
tttttcttttattcagttatagaacgtatgtttcccttagttctagaact
ttacaaagttcagatttccccctacccccacctccttttcagaggagagg
gtttaaaaagagatcagtctcctttagtttcttatggcttacctacctgt
aaggaggctagcgaggtgcttaggaaggggaacactagtttgcttgtgtg
gggctatcccactaagttcttctttgtattgctgccctctaccacctcct
gggggaagtggcgtttccttttctggcggtctctagagggttatggcagg
ctgctgaggattctttcttcttcacaatcaggaagagactggctgtctca
tcgatgtatcaaacgactttgtaaagcctttctttatttgttctct
gaattctgtggtcctgatgtttgaaattgctttcacatcaaacacactga
gccttccaaatgtatgctgctgggctttgtgaacaaagttgggctttgag
ataaagaccccaattggtacaatttccaggacagagtgtgcaccagagat
gtcagtctgagaatttccagagaagacagttgtcctggagcagcaaagaa
tgaccaccagcacactgaaggaggataatgcaagggaaatctaaaaggga
cacaggaggaatttctataagtttctaggacacatgcagtccattggtta
agaaaccctgagacaggaatgggcattggtaaagttattgttgctgggca
agttttctgtcctgagtactaatctgaatcactgtagtcttgaacattat
atggattgctaaaaaaagaaattgatattttccccggagtatgaggtgct
tgggccttggactctccttgaaaaggcactcctctcagagaatgagttca
tctgggtcggttgtctctcattctggacacttgcagagcttggctgaaga
ggcctagagaagaaaagattaagggtggacctcggggcacatttgcagga
ggctctgttctcttgtcactcttgagtgtgttttactgggttcccaagag
ccaaaaagtcagagtgtgttctccatcagtgcccccaggccctgctatcc
ctgtcattagcctgaggcaagtgtaggcagaggcgctctctgttgagtac
agccctaagaccctggactcccagcagagaacagaggacaagatggagct
gagattagaacgagtcacagagctaaagaactttttgttccccggcctcc
ttcagtgtatagggtcactctactcttcttgtctgagtagataccactcc
gttgcatcagctcctgctaactctcagagcgttctagctaccaagaggga
gtgaggcaggttccatgtgagcatctgatctgtcagagattctcagagga
gatggaacttgaggagctactgctatggtcagagaccactgttagcagta
aatgagaagaaaccttcccaacattgtgggatccagaagaacagaaggca
atgagactttgttttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104773415_104774524
seq2: B6Ng01-091P13.b_48_1143

seq1  GAATTCCTTAAGATTCTTCCCCCTCTTCCTCAGATTCAGGGCCTTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGATTCTTCCCCCTCTTCCTCAGATTCAGGGCCTTGTCTG  50

seq1  TGTTACACAAAGTGTTTACCACAGAACTGCACCCTCAGCCTCTCTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAAAGTGTTTACCACAGAACTGCACCCTCAGCCTCTCTTCAGG  100

seq1  ACTTTCCTTCAATATTCTTCCTGGTGGCACCATGAGTTTCTCTTCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTCAATATTCTTCCTGGTGGCACCATGAGTTTCTCTTCTTACT  150

seq1  GTGTATCAGTGTACTTTCCATTTGGACCCTACTGATCATGGTCTTCGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCAGTGTACTTTCCATTTGGACCCTACTGATCATGGTCTTCGATA  200

seq1  ATTATACCAAACAAAACCCAAACCAAATGGATAAACCAACAGATAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCAAACAAAACCCAAACCAAATGGATAAACCAACAGATAAACAC  250

seq1  ACGAACAAAAGCAAGCAAGCAGACAAAACAAAGTGAAGGTGGGCTTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACAAAAGCAAGCAAGCAGACAAAACAAAGTGAAGGTGGGCTTGGTG  300

seq1  GGTACACCTGTAATCCCAAAGCTGATGCAGAAGAATTGCTGTGCATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACCTGTAATCCCAAAGCTGATGCAGAAGAATTGCTGTGCATTCAA  350

seq1  AGACAGCCTGGGCTCCGCAGGGAATCCCAGGGCAGCCGGTGCTTCATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCTGGGCTCCGCAGGGAATCCCAGGGCAGCCGGTGCTTCATAGT  400

seq1  GAGTCCTTTCCTGTCAATTGGCTTTCACCGTAAATCTTCTTGTGCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTTCCTGTCAATTGGCTTTCACCGTAAATCTTCTTGTGCAAATG  450

seq1  AACAGACAGTTGAAGAATATTGAGTAAATTTCTTTTGATATGGAGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGTTGAAGAATATTGAGTAAATTTCTTTTGATATGGAGCAGTT  500

seq1  AATGATCATAAAACAGGTCTTGCTATTCGTATGGCATGCTTTGTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCATAAAACAGGTCTTGCTATTCGTATGGCATGCTTTGTTTCCTT  550

seq1  GTAGGGCAACCCCTGGCTTAGTGTCAGGAAACAGAGAGCCTTGCTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCAACCCCTGGCTTAGTGTCAGGAAACAGAGAGCCTTGCTCTACT  600

seq1  TAAGCTGACAGCAGACACCTCATTCTAGATGTCAATGATAACCTATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGACAGCAGACACCTCATTCTAGATGTCAATGATAACCTATTTCT  650

seq1  TTTTAAGGTTTTCACTTTGCTTTTATTGTTGGTTAGAGACAACTAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTTTTCACTTTGCTTTTATTGTTGGTTAGAGACAACTAAGTTG  700

seq1  TTTTTCTTTTATTCAGTTATAGAACGTATGTTTCCCTTAGTTCTAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTATTCAGTTATAGAACGTATGTTTCCCTTAGTTCTAGAACT  750

seq1  TTACAAAGTTCAGATTTCCCCCTACCCCCACCTCCTTTTCAGAGGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGTTCAGATTTCCCCCTACCCCCACCTCCTTTTCAGAGGAGAGG  800

seq1  GTTTAAAAAGAGATCAGTCTCCTTTAGTTTCTTATGGCTTACCTACCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAGAGATCAGTCTCCTTTAGTTTCTTATGGCTTACCTACCTGT  850

seq1  AAGGAGGCTAGCGAGGTGCTTAGGAAGGGGAACACTAGTTTGCTTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGCTAGCGAGGTGCTTAGGAAGGGGAACACTAGTTTGCTTGTGTG  900

seq1  GGGCTATCCCACTAAGTTCTTCTTTTGTATTGCTGCCCTCTTACCACCTC  950
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GGGCTATCCCACTAAGTTCTTC-TTTGTATTGCTGCCCTC-TACCACCTC  948

seq1  CTGGGGGAAGGTGGCGTTTCCTTTTCTGGCGGTCTCTAGAGGGTTATGGC  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAA-GTGGCGTTTCCTTTTCTGGCGGTCTCTAGAGGGTTATGGC  997

seq1  AGGGCTGCTTGAAGGATTCTTTCTTCTCCACCATTCAGGGGAAGAGACTG  1050
      | |||||||   ||||||||||||||| || || |||  |||||||||| 
seq2  A-GGCTGCT--GAGGATTCTTTCTTCTTCA-CAATCA--GGAAGAGACT-  1040

seq1  GGCTGTCTCATCGATGTATTCAAACGGTCTTTGTTAAAGCTTTCCTTTTA  1100
      |||||||||||||||||| |||||| | |||||| ||  |||||  ||||
seq2  GGCTGTCTCATCGATGTA-TCAAAC-GACTTTGTAAAGCCTTTC--TTTA  1086

seq1  TCTGTTCTCT  1110
      | ||||||||
seq2  TTTGTTCTCT  1096

seq1: chr12_104939123_104940257
seq2: B6Ng01-091P13.g_69_1187 (reverse)

seq1  GAAGAAAAACAAAGTCTCATGGCCTTTCCTGTTCTTCTGGGACCCACCAT  50
      |||| ||||||||||||||| |||||  ||||||||||||  ||||| ||
seq2  GAAG-AAAACAAAGTCTCATTGCCTT--CTGTTCTTCTGGATCCCACAAT  47

seq1  GTTGGGAAAGTGTTTCCTTTCTCATTTACTGCTAACAGTGGTCTCTGACC  100
      ||||||||   |||||  ||||||||||||||||||||||||||||||||
seq2  GTTGGGAA--GGTTTC--TTCTCATTTACTGCTAACAGTGGTCTCTGACC  93

seq1  ATAGCAGTAGCTCCTCAAGTTCCATCTCCTCTGAGAAATTCTCCTGACAG  150
      |||||||||||||||||||||||||||||||||||||  ||| |||||||
seq2  ATAGCAGTAGCTCCTCAAGTTCCATCTCCTCTGAGAA--TCT-CTGACAG  140

seq1  AATCAAGATGCTCACATGGAACCCTGCCTCACCTCCCTCTTGGTAGCTAG  200
       ||| |||||||||||||||| ||||||||| ||||||||||||||||| 
seq2  -ATC-AGATGCTCACATGGAA-CCTGCCTCA-CTCCCTCTTGGTAGCTA-  185

seq1  GAACGCTCCTGAGAGTTAGCAGGAGCTGATGCAACGGAGTGGTATCTACT  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCT-CTGAGAGTTAGCAGGAGCTGATGCAACGGAGTGGTATCTACT  234

seq1  CAGACAAGAAGAGTAGAGTGACCCTATACACTGAAGGAGGCCGGGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGAAGAGTAGAGTGACCCTATACACTGAAGGAGGCCGGGGAACA  284

seq1  AAAAGTTCTTTAGCTCTGTGACTCGTTCTAATCTCAGCTCCATCTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCTTTAGCTCTGTGACTCGTTCTAATCTCAGCTCCATCTTGTCC  334

seq1  TCTGTTCTCTGCTGGGAGTCCAGGGTCTTAGGGCTGTACTCAACAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCTGCTGGGAGTCCAGGGTCTTAGGGCTGTACTCAACAGAGAG  384

seq1  CGCCTCTGCCTACACTTGCCTCAGGCTAATGACAGGGATAGCAGGGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGCCTACACTTGCCTCAGGCTAATGACAGGGATAGCAGGGCCTG  434

seq1  GGGGCACTGATGGAGAACACACTCTGACTTTTTGGCTCTTGGGAACCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTGATGGAGAACACACTCTGACTTTTTGGCTCTTGGGAACCCAG  484

seq1  TAAAACACACTCAAGAGTGACAAGAGAACAGAGCCTCCTGCAAATGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACACTCAAGAGTGACAAGAGAACAGAGCCTCCTGCAAATGTGCC  534

seq1  CCGAGGTCCACCCTTAATCTTTTCTTCTCTAGGCCTCTTCAGCCAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTCCACCCTTAATCTTTTCTTCTCTAGGCCTCTTCAGCCAAGCTC  584

seq1  TGCAAGTGTCCAGAATGAGAGACAACCGACCCAGATGAACTCATTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGTCCAGAATGAGAGACAACCGACCCAGATGAACTCATTCTCTG  634

seq1  AGAGGAGTGCCTTTTCAAGGAGAGTCCAAGGCCCAAGCACCTCATACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGCCTTTTCAAGGAGAGTCCAAGGCCCAAGCACCTCATACTCC  684

seq1  GGGGAAAATATCAATTTCTTTTTTTAGCAATCCATATAATGTTCAAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAATATCAATTTCTTTTTTTAGCAATCCATATAATGTTCAAGACT  734

seq1  ACAGTGATTCAGATTAGTACTCAGGACAGAAAACTTGCCCAGCAACAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATTCAGATTAGTACTCAGGACAGAAAACTTGCCCAGCAACAATA  784

seq1  ACTTTACCAATGCCCATTCCTGTCTCAGGGTTTCTTAACCAATGGACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCAATGCCCATTCCTGTCTCAGGGTTTCTTAACCAATGGACTGC  834

seq1  ATGTGTCCTAGAAACTTATAGAAATTCCTCCTGTGTCCCTTTTAGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTAGAAACTTATAGAAATTCCTCCTGTGTCCCTTTTAGATTTC  884

seq1  CCTTGCATTATCCTCCTTCAGTGTGCTGGTGGTCATTCTTTGCTGCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATTATCCTCCTTCAGTGTGCTGGTGGTCATTCTTTGCTGCTCCA  934

seq1  GGACAACTGTCTTCTCTGGAAATTCTCAGACTGACATCTCTGGTGCACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTGTCTTCTCTGGAAATTCTCAGACTGACATCTCTGGTGCACAC  984

seq1  TCTGTCCTGGAAATTGTACCAATTGGGGTCTTTATCTCAAAGCCCAACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTGGAAATTGTACCAATTGGGGTCTTTATCTCAAAGCCCAACTT  1034

seq1  TGTTCACAAAGCCCAGCAGCATACATTTGGAAGGCTCAGTGTGTTTGATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAAAGCCCAGCAGCATACATTTGGAAGGCTCAGTGTGTTTGATG  1084

seq1  TGAAAGCAATTTCAAACATCAGGACCACAGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAATTTCAAACATCAGGACCACAGAATTC  1119