BAC Information

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BAC

Clone NameB6Ng01-092E12
Chromosome8 (Build37)12 (Build37)
Map Location 96,173,321 - 96,173,79628,817,999 - 28,818,213
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
Downstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092E12.bB6Ng01-092E12.g
ACCDH904086DH904087
length47069
definitionDH904086|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E12, 5' end.DH904087|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,173,321 - 96,173,796)(28,817,999 - 28,818,213)
sequence
tgggaacttgtcagaggacatataaatcctagagcccagataggtcgtgg
ctggttgatgggttgttggttgtatgcttctggctgcagtttgttaagta
gtcatgtgcaaagaagaaataataagaaattagatatcctgatagcgtgt
atcaaacttgccccaaggaactcgattcctccaatcagcactaagtaatc
taatggtagtgatgctctctttcctctctctccttttttctctcctatct
ggtgttaggggtggaaggggtggaagaaaaaagaacccaaacccacaaag
taccccaaagtccagctacagttgattctatgcggcattcaagttgatcc
tgctacgtagattttcacatgatacatttttactttggtgctttgttttg
ttttgtttgtttggtttgttttatcacacatgagtttttatgttgccttc
atccttgccccccaacactg
ccggacatccagggctacacagagaaactctgtctcagaaaaagaaaaga
aaagaaaagaagagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96173321_96173796
seq2: B6Ng01-092E12.b_45_520 (reverse)

seq1  CAGTGTTGGGGGGCAGGGATGAAGGCAACATAAAAACTCATGTGTGATAA  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGGGGGGCAAGGATGAAGGCAACATAAAAACTCATGTGTGATAA  50

seq1  AACAAACCAAACAAACAAAACAAAACAAAGCACCAAAGTAAAAATGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCAAACAAACAAAACAAAACAAAGCACCAAAGTAAAAATGTATC  100

seq1  ATGTGAAAATCTACGTAGCAGGATCAACTTGAATGCCGCATAGAATCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAATCTACGTAGCAGGATCAACTTGAATGCCGCATAGAATCAAC  150

seq1  TGTAGCTGGACTTTGGGGTACTTTGTGGGTTTGGGTTCTTTTTTCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTGGACTTTGGGGTACTTTGTGGGTTTGGGTTCTTTTTTCTTCCA  200

seq1  CCCCTTCCACCCCTAACACCAGATAGGAGAGAAAAAAGGAGAGAGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCACCCCTAACACCAGATAGGAGAGAAAAAAGGAGAGAGAGGAA  250

seq1  AGAGAGCATCACTACCATTAGATTACTTAGTGCTGATTGGAGGAATCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATCACTACCATTAGATTACTTAGTGCTGATTGGAGGAATCGAG  300

seq1  TTCCTTGGGGCAAGTTTGATACACGCTATCAGGATATCTAATTTCTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGGCAAGTTTGATACACGCTATCAGGATATCTAATTTCTTATT  350

seq1  ATTTCTTCTTTGCACATGACTACTTAACAAACTGCAGCCAGAAGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTTTGCACATGACTACTTAACAAACTGCAGCCAGAAGCATACA  400

seq1  ACCAACAACCCATCAACCAGCCACGACCTATCTGGGCTCTAGGATTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAACCCATCAACCAGCCACGACCTATCTGGGCTCTAGGATTTATA  450

seq1  TGTCCTCTGACAAGTTCCCAGAATTC  476
      ||||||||||||||||||||||||||
seq2  TGTCCTCTGACAAGTTCCCAGAATTC  476

seq1: chr12_28817999_28818213
seq2: B6Ng01-092E12.g_76_142 (reverse)

seq1  CTCTTCTCTTCTTTTCTTTTTTGCTTTTTTTTTTTGCTTTGCTTGCTTTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGC  150
                                                       |
seq2  -------------------------------------------------C  1

seq1  TTTGCTTTGCTTTGCTTTGCTTTGCTTTTTC-GAGACAGGGTTTCTCTGT  199
      | | || | |||| |||| |||| ||||||| ||||||| ||||||||||
seq2  TCTTCTCTTCTTTTCTTTTCTTTTCTTTTTCTGAGACAGAGTTTCTCTGT  51

seq1  GTAGCCCTGGCTGTCC  215
      |||||||||| |||||
seq2  GTAGCCCTGGATGTCC  67