BAC Information

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BAC

Clone NameB6Ng01-092L06
Chromosome3 (Build37)12 (Build37)
Map Location 145,778,029 - 145,778,13667,094,928 - 67,095,949
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOdf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63
Downstream geneMcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L06.bB6Ng01-092L06.g
ACCDH904389DH904390
length9081,022
definitionDH904389|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L06, 5' end.DH904390|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,778,029 - 145,778,136)(67,094,928 - 67,095,949)
sequence
gaattctctgaccactgggactcaggagagagttggagtcccaggagtgc
tgacagaagctaacagaatcacaggaggatcaagctccagccagagacag
ctagaacatctaactctagagattaccagatggcaaaaggccaacttaag
aatcttatggacagacactgagaaacagacactaaggcatcatcagaatc
tagtactcccaccacaacgagtcctggataccccaacatgcccgaaaaag
aaaatttgaatttaaaatcatatcttatgatgctgatagaggattttaag
aaggccattaataactcacttaaagaaataaaggagaacacaggtaaaca
ggtagaaccacttaaagaggaagcacaaaatcacttaaagaactacagga
aaacactcctaaacaggtagaagatctcaaagaggaaaaacaaacatccc
ttaaagaactacaggaaaggcccgacagtggtggcatacacctttattcc
cagcacttgtgaggcagaggcaggcagatttctgagttagaggccagcct
ggtctacaaagtgagttccaggacagccagggctatacagagaaaccatg
tctcaaaaaactaaaaattaaattaaatttaaaaaaaagaactacaggaa
acacaaccaaaaaggtgatggaattgaacaaaaccatccaagatctaaaa
aaggaagtagaaacaattaaaaaataaggggtgggggggggggagacaac
ccctggagttagaaatcctaggaaagaaatcaggaaaacataggtgtgag
catcagcaactgaatacaatagatgaaagagagaatctcaggtgcagaag
attccttagagaacatcggcacaacaataaagaaaatgcaaaatgaaaaa
agaaccta
gaattctcagctctgcctgaacaatgcctgcttggatgctgccttgctcc
taccttgatgataatggaccgaacctctgaaccagtaagccagccccaat
taaatgttgtccttacaagggttgcatggtcatggtgtctcttcacagca
gtaaaaccctgagacagaagtgaaatgaaaagttgtgggcactaatattt
ctggtttgagaaatagaaagctgaggttgctgttgagaaaatggagaaaa
tttcatgagcaataaatctgagttgtggaactcagggggctctacttcta
aaatgtctagaattcccattacatgtctaagttgaaaggatggactggca
gttagatgtctacatagaagtcagctgagcagtccaagttagagacataa
gcatggaggccacccaaatataggattttctgtgtcctgaggctataatg
ggaaaggaactcaaagtgactaaataacagaagagaagttaagatttcaa
aacttgtgatttgttgctcattaatatgcaaaggtgtggctatgaaattc
accagcagaggagatgatcaaggaggattaacaagtagtgtgatagggaa
agcactcaaatgtagagacccagaaacaaagtggtaaaagattgtctttg
aaaagaaatgtttaatgaactcctcatcaaataattatttaaacagttat
gattcagcagcatgaactcaatagtgaccgtgataagacaacagtggtaa
agggatgggagagttgaagatagttatatttggggtcatctggaggagaa
catttagcatgtgagttgtggggattcactattttaaatcctaagaagtc
ttaaacaacgcagaagaaagtatgtagtctacaatataaactgtcttagg
atcacaggctagaggacaaaaggacatgtaaagccaaaatgagcctttct
ctcatgcaaattcatggcagatactcaggcccacttaagatgggacctac
caagcctgaaagaaggatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145778029_145778136
seq2: B6Ng01-092L06.b_526_633 (reverse)

seq1  TAGCCCTGGCTGTCCTGGAACTCACTCTGTACACCAGGCTGGCCTCGAAC  50
      |||||||||||||||||||||||||| |||| |||||||||||||| |||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCTAAC  50

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGC  100
      ||||||||| ||||||||||||||| |||||||||||| |||||| ||  
seq2  TCAGAAATCTGCCTGCCTCTGCCTCACAAGTGCTGGGAATAAAGGTGTAT  100

seq1  ACCACCAC  108
       |||||||
seq2  GCCACCAC  108

seq1: chr12_67094928_67095949
seq2: B6Ng01-092L06.g_68_1089

seq1  GAATTCTCAGCTCTGCCTGAACAATGCCTGCTTGGATGCTGCCTTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCTGCCTGAACAATGCCTGCTTGGATGCTGCCTTGCTCC  50

seq1  TACCTTGATGATAATGGACCGAACCTCTGAACCAGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGATGATAATGGACCGAACCTCTGAACCAGTAAGCCAGCCCCAAT  100

seq1  TAAATGTTGTCCTTACAAGGGTTGCATGGTCATGGTGTCTCTTCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGTCCTTACAAGGGTTGCATGGTCATGGTGTCTCTTCACAGCA  150

seq1  GTAAAACCCTGAGACAGAAGTGAAATGAAAAGTTGTGGGCACTAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCCTGAGACAGAAGTGAAATGAAAAGTTGTGGGCACTAATATTT  200

seq1  CTGGTTTGAGAAATAGAAAGCTGAGGTTGCTGTTGAGAAAATGGAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAGAAATAGAAAGCTGAGGTTGCTGTTGAGAAAATGGAGAAAA  250

seq1  TTTCATGAGCAATAAATCTGAGTTGTGGAACTCAGGGGGCTCTACTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAGCAATAAATCTGAGTTGTGGAACTCAGGGGGCTCTACTTCTA  300

seq1  AAATGTCTAGAATTCCCATTACATGTCTAAGTTGAAAGGATGGACTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTAGAATTCCCATTACATGTCTAAGTTGAAAGGATGGACTGGCA  350

seq1  GTTAGATGTCTACATAGAAGTCAGCTGAGCAGTCCAAGTTAGAGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGTCTACATAGAAGTCAGCTGAGCAGTCCAAGTTAGAGACATAA  400

seq1  GCATGGAGGCCACCCAAATATAGGATTTTCTGTGTCCTGAGGCTATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGGCCACCCAAATATAGGATTTTCTGTGTCCTGAGGCTATAATG  450

seq1  GGAAAGGAACTCAAAGTGACTAAATAACAGAAGAGAAGTTAAGATTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAACTCAAAGTGACTAAATAACAGAAGAGAAGTTAAGATTTCAA  500

seq1  AACTTGTGATTTGTTGCTCATTAATATGCAAAGGTGTGGCTATGAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGATTTGTTGCTCATTAATATGCAAAGGTGTGGCTATGAAATTC  550

seq1  ACCAGCAGAGGAGATGATCAAGGAGGATTAACAAGTAGTGTGATAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGAGGAGATGATCAAGGAGGATTAACAAGTAGTGTGATAGGGAA  600

seq1  AGCACTCAAATGTAGAGACCCAGAAACAAAGTGGTAAAAGATTGTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAAATGTAGAGACCCAGAAACAAAGTGGTAAAAGATTGTCTTTG  650

seq1  AAAAGAAATGTTTAATGAACTCCTCATCAAATAATTATTTAAACAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATGTTTAATGAACTCCTCATCAAATAATTATTTAAACAGTTAT  700

seq1  GATTCAGCAGCATGAACTCAATAGTGACCGTGATAAGACAACAGTGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGCAGCATGAACTCAATAGTGACCGTGATAAGACAACAGTGGTAA  750

seq1  AGGGATGGGAGAGTTGAAGATAGTTATATTTGGGGTCATCTGGAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGAGAGTTGAAGATAGTTATATTTGGGGTCATCTGGAGGAGAA  800

seq1  CA-TTAGCATGTGAGTTGTGGGGATTCAC-AATTTAAATCCTAAGAAGTC  848
      || |||||||||||||||||||||||||| | ||||||||||||||||||
seq2  CATTTAGCATGTGAGTTGTGGGGATTCACTATTTTAAATCCTAAGAAGTC  850

seq1  TAAAACAACGCAGAAGAAAGTATGTAGTCTACAATATAAACTGTCTTAGG  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAACGCAGAAGAAAGTATGTAGTCTACAATATAAACTGTCTTAGG  900

seq1  ATCACAGGCTAGAGGACAAAAGGACATGTAAAGCCAAAATGAGCCCTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCACAGGCTAGAGGACAAAAGGACATGTAAAGCCAAAATGAGCCTTTCT  950

seq1  CTCATGCCAGAGTCCATGGCAGATACACAGGCACAC-TAAGATGGGACCA  997
      |||||||   | | |||||||||||| ||||| ||| |||||||||||| 
seq2  CTCATGC--AAATTCATGGCAGATACTCAGGCCCACTTAAGATGGGACCT  998

seq1  ACCAAGCCTGATAGAATGAATCTAG  1022
      ||||||||||| |||| | ||||||
seq2  ACCAAGCCTGAAAGAA-GGATCTAG  1022